Wall clock time and date at job start Sun Mar 29 2020 22:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99899 * 2 1 4 4 H 1.48505 * 109.47294 * 270.00074 * 3 2 1 5 5 H 1.48498 * 109.47131 * 29.99963 * 3 2 1 6 6 H 1.48501 * 109.47018 * 150.00192 * 3 2 1 7 7 C 1.37872 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00022 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99794 * 0.02562 * 7 2 1 10 10 N 1.46910 * 109.46975 * 179.97438 * 9 7 2 11 11 C 1.46894 * 111.00038 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47259 * 179.97438 * 11 10 9 13 13 C 1.38678 * 120.79404 * 260.02149 * 12 11 10 14 14 C 1.38148 * 119.22265 * 179.97438 * 13 12 11 15 15 N 1.31899 * 120.83323 * 0.02589 * 14 13 12 16 16 C 1.31925 * 121.73442 * 359.94917 * 15 14 13 17 17 Cl 1.73604 * 119.65132 * 180.02562 * 16 15 14 18 18 C 1.38620 * 120.69481 * 0.04685 * 16 15 14 19 19 F 1.35103 * 120.45241 * 180.24777 * 18 16 15 20 20 H 0.96998 * 119.99792 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.47637 * 60.00042 * 9 7 2 22 22 H 1.08999 * 109.47256 * 299.99237 * 9 7 2 23 23 H 1.00905 * 110.99586 * 303.95212 * 10 9 7 24 24 H 1.08997 * 109.47724 * 59.99585 * 11 10 9 25 25 H 1.09009 * 109.46951 * 300.00212 * 11 10 9 26 26 H 1.08006 * 120.39077 * 359.95221 * 13 12 11 27 27 H 1.07994 * 119.58071 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2057 -3.6157 -0.0027 11 6 1.5054 -4.9070 -0.0045 12 6 2.5149 -6.0259 -0.0061 13 6 2.8371 -6.6897 -1.1803 14 6 3.7674 -7.7103 -1.1445 15 7 4.3474 -8.0570 -0.0118 16 6 4.0678 -7.4495 1.1254 17 17 4.8640 -7.9495 2.5847 18 6 3.1446 -6.4163 1.1672 19 9 2.8656 -5.7941 2.3336 20 1 -0.4850 0.8400 -0.0004 21 1 0.6247 -2.5563 -0.8919 22 1 0.6241 -2.5575 0.8881 23 1 2.8405 -3.5479 -0.7841 24 1 0.8807 -4.9805 -0.8947 25 1 0.8801 -4.9825 0.8853 26 1 2.3660 -6.4122 -2.1117 27 1 4.0224 -8.2314 -2.0554 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824301607.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:48 Heat of formation + Delta-G solvation = -40.474758 kcal Electronic energy + Delta-G solvation = -14728.166235 eV Core-core repulsion = 11846.316479 eV Total energy + Delta-G solvation = -2881.849756 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 244.047 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.06640 -41.26127 -37.94777 -37.35895 -34.99614 -33.36274 -31.81305 -29.35049 -26.65551 -24.67184 -23.78168 -22.97586 -18.93646 -18.83721 -18.40376 -17.74525 -17.14594 -16.71699 -16.12553 -15.51446 -15.27728 -15.05573 -14.88456 -14.72400 -13.95630 -13.73360 -13.26105 -13.01259 -12.82345 -12.62468 -12.61265 -12.46167 -12.07651 -11.40498 -10.88339 -10.79435 -10.67323 -9.95760 -9.22053 -8.24224 -6.34975 -0.35518 -0.19462 0.58318 1.41117 1.42889 1.54442 2.33970 2.40801 2.82256 3.09779 3.18653 3.41769 3.60200 3.80030 3.91819 4.34895 4.51855 4.54125 4.71280 4.92043 5.05569 5.22706 5.36142 5.58013 5.97537 6.34744 6.45866 6.63107 6.84432 7.35801 8.87141 Molecular weight = 244.05amu Principal moments of inertia in cm(-1) A = 0.035929 B = 0.004950 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.136032 B = 5655.579157 C = 5975.422679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.971 3.029 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.537 4.537 8 H 0.063 0.937 9 C 0.210 3.790 10 N -0.686 5.686 11 C 0.097 3.903 12 C -0.063 4.063 13 C -0.120 4.120 14 C 0.117 3.883 15 N -0.470 5.470 16 C 0.126 3.874 17 Cl -0.020 7.020 18 C 0.067 3.933 19 F -0.126 7.126 20 H 0.266 0.734 21 H -0.026 1.026 22 H 0.000 1.000 23 H 0.340 0.660 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.186 0.814 27 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.448 -16.102 -3.215 17.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.795 3.205 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.575 4.575 8 H 0.081 0.919 9 C 0.083 3.917 10 N -0.317 5.317 11 C -0.032 4.032 12 C -0.072 4.072 13 C -0.140 4.140 14 C -0.040 4.040 15 N -0.181 5.181 16 C -0.038 4.038 17 Cl 0.009 6.991 18 C 0.044 3.956 19 F -0.104 7.104 20 H 0.075 0.925 21 H -0.008 1.008 22 H 0.019 0.981 23 H 0.157 0.843 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.203 0.797 27 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 7.040 -16.670 -2.324 18.244 hybrid contribution -0.831 1.643 -0.119 1.845 sum 6.209 -15.028 -2.442 16.442 Atomic orbital electron populations 1.70072 1.07674 1.28063 1.51361 1.25898 0.95778 1.03229 0.94552 0.85360 0.78414 0.78124 0.78574 1.19403 1.20781 1.19236 1.21508 0.93771 0.91424 1.50816 0.91927 1.19219 0.90461 0.88224 0.93807 1.60549 1.20719 1.00683 1.49793 1.20797 0.93273 0.86864 1.02280 1.20575 0.97303 0.97181 0.92127 1.22568 0.97761 0.95120 0.98534 1.23475 0.91051 0.94066 0.95442 1.67152 1.25511 1.27574 0.97832 1.21756 0.95986 0.94931 0.91150 1.98407 1.78969 1.90797 1.30970 1.18352 0.99145 0.94644 0.83455 1.91545 1.92196 1.81124 1.45551 0.92543 1.00828 0.98137 0.84273 0.91810 0.91278 0.79717 0.76533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.32 13.29 21.45 0.28 -55.04 15 2 C 0.00 0.22 5.46 84.65 0.46 0.69 15 3 Si 0.97 43.83 29.54 68.60 2.03 45.86 15 4 H -0.27 -11.56 7.11 99.48 0.71 -10.86 15 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 15 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 15 7 C -0.54 -30.17 9.32 25.60 0.24 -29.93 15 8 H 0.06 3.44 7.81 -2.91 -0.02 3.42 15 9 C 0.21 10.90 5.44 85.56 0.47 11.37 15 10 N -0.69 -28.34 6.48 -521.97 -3.38 -31.72 15 11 C 0.10 3.16 5.61 85.56 0.48 3.64 15 12 C -0.06 -1.70 5.43 -19.63 -0.11 -1.80 15 13 C -0.12 -2.19 9.78 22.35 0.22 -1.97 15 14 C 0.12 1.96 11.18 84.66 0.95 2.91 15 15 N -0.47 -11.27 10.34 -186.54 -1.93 -13.20 15 16 C 0.13 3.50 7.28 84.77 0.62 4.12 15 17 Cl -0.02 -0.53 28.78 -2.72 -0.08 -0.60 15 18 C 0.07 2.05 7.26 22.49 0.16 2.22 15 19 F -0.13 -4.44 16.37 44.97 0.74 -3.71 15 20 H 0.27 14.81 8.31 -92.71 -0.77 14.04 15 21 H -0.03 -1.40 8.14 -2.39 -0.02 -1.42 15 22 H 0.00 0.03 8.14 -2.39 -0.02 0.01 15 23 H 0.34 12.97 8.71 -89.69 -0.78 12.18 15 24 H 0.06 1.83 8.04 -2.39 -0.02 1.81 15 25 H 0.07 2.45 8.02 -2.38 -0.02 2.43 15 26 H 0.19 2.13 8.06 -2.91 -0.02 2.10 15 27 H 0.22 1.58 8.06 -2.91 -0.02 1.56 15 Total: -1.00 -66.35 266.16 1.56 -64.79 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: 0.42 Total: 2.39 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: 3.48 Total: -8.77 kcal Atomic # 7 Polarization: -94.93 SS G_CDS: -5.03 Total: -99.96 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 0.74 Total: -3.71 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -0.08 Total: -0.60 kcal Total: -66.35 1.56 -64.79 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824301607.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.313 kcal (2) G-P(sol) polarization free energy of solvation -66.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds