Wall clock time and date at job start Sun Mar 29 2020 22:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47255 * 2 1 4 4 C 1.52999 * 109.47216 * 239.99588 * 2 1 3 5 5 C 1.53003 * 109.46737 * 176.23251 * 4 2 1 6 6 C 1.50702 * 109.46654 * 185.00080 * 5 4 2 7 7 H 1.07999 * 120.00481 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99802 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00254 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 120.00148 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.47387 * 89.99232 * 10 8 6 12 12 H 1.48489 * 109.47354 * 209.99662 * 10 8 6 13 13 H 1.48499 * 109.46828 * 329.99450 * 10 8 6 14 14 N 1.46899 * 109.46656 * 119.99750 * 2 1 3 15 15 C 1.46844 * 111.00529 * 290.08589 * 14 2 1 16 16 C 1.53036 * 109.52473 * 185.84249 * 15 14 2 17 17 C 1.53113 * 109.27887 * 300.81496 * 16 15 14 18 18 C 1.53123 * 109.15670 * 57.65582 * 17 16 15 19 19 C 1.53009 * 109.50029 * 182.40391 * 18 17 16 20 20 F 1.39903 * 109.50453 * 62.29011 * 18 17 16 21 21 C 1.46854 * 111.00080 * 54.29658 * 14 2 1 22 22 H 1.09000 * 109.46945 * 60.00338 * 1 2 3 23 23 H 1.09000 * 109.47255 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.47545 * 300.00282 * 1 2 3 25 25 H 1.09000 * 109.47378 * 296.23550 * 4 2 1 26 26 H 1.09007 * 109.46653 * 56.24062 * 4 2 1 27 27 H 1.08995 * 109.47502 * 305.00128 * 5 4 2 28 28 H 1.08998 * 109.47148 * 65.00926 * 5 4 2 29 29 H 0.96998 * 120.00559 * 180.02562 * 9 8 6 30 30 H 1.09001 * 109.46494 * 65.82181 * 15 14 2 31 31 H 1.09004 * 109.46090 * 305.85721 * 15 14 2 32 32 H 1.08995 * 109.50392 * 60.75840 * 16 15 14 33 33 H 1.09004 * 109.49914 * 180.87653 * 16 15 14 34 34 H 1.08996 * 109.52391 * 177.56162 * 17 16 15 35 35 H 1.08995 * 109.52775 * 297.75443 * 17 16 15 36 36 H 1.09004 * 109.46614 * 179.80341 * 19 18 17 37 37 H 1.08998 * 109.47263 * 299.80653 * 19 18 17 38 38 H 1.09000 * 109.47074 * 59.80962 * 19 18 17 39 39 H 1.08995 * 109.45973 * 294.17670 * 21 14 2 40 40 H 1.08997 * 109.45889 * 54.15005 * 21 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5671 -0.6397 -1.2974 6 6 4.0618 -1.2417 -2.5873 7 1 3.3575 -1.6421 -3.3015 8 6 5.4135 -1.2805 -2.8562 9 7 5.8454 -1.8063 -3.9817 10 14 6.6318 -0.5874 -1.6213 11 1 7.0415 -1.6570 -0.6762 12 1 7.8272 -0.0762 -2.3387 13 1 5.9951 0.5222 -0.8672 14 7 2.0196 -0.6925 1.1995 15 6 1.7511 0.0960 2.4089 16 6 2.4006 -0.5831 3.6168 17 6 1.8307 -1.9960 3.7693 18 6 2.0808 -2.7807 2.4785 19 6 1.4615 -4.1746 2.6000 20 9 3.4580 -2.8979 2.2624 21 6 1.4406 -2.0380 1.3035 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.7329 -1.7666 -1.2161 26 1 1.6227 -0.2479 -2.1379 27 1 3.8772 0.4037 -1.2409 28 1 3.9871 -1.1897 -0.4552 29 1 6.7963 -1.8339 -4.1708 30 1 0.6747 0.1648 2.5661 31 1 2.1651 1.0972 2.2890 32 1 3.4786 -0.6397 3.4664 33 1 2.1879 -0.0058 4.5166 34 1 2.3218 -2.4989 4.6023 35 1 0.7588 -1.9381 3.9585 36 1 1.6369 -4.7315 1.6795 37 1 1.9178 -4.7032 3.4370 38 1 0.3889 -4.0821 2.7700 39 1 0.3657 -1.9593 1.4659 40 1 1.6293 -2.5868 0.3809 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491684.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:53 Heat of formation + Delta-G solvation = -66.373373 kcal Electronic energy + Delta-G solvation = -19030.116766 eV Core-core repulsion = 16179.359991 eV Total energy + Delta-G solvation = -2850.756775 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.169 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -47.24468 -39.10577 -35.35842 -32.99412 -32.11286 -30.76455 -29.18525 -26.86191 -25.47008 -24.28976 -21.94826 -20.83626 -19.82806 -19.01298 -16.55753 -16.43175 -15.39575 -15.22242 -14.76966 -14.49589 -14.17415 -14.07933 -13.50307 -13.05523 -12.90372 -12.58476 -12.46162 -12.29993 -12.16026 -12.11099 -11.80180 -11.49680 -11.31804 -11.23887 -10.83022 -10.80376 -10.46277 -10.20041 -10.00428 -9.79898 -9.53570 -9.39121 -8.95697 -8.37448 -7.89872 -5.89770 -3.85790 3.46701 3.52313 3.60063 4.02333 4.48556 4.61962 4.62738 4.76158 4.81509 5.05159 5.23413 5.27382 5.40114 5.41770 5.46565 5.50014 5.53938 5.61890 5.64834 5.68372 5.80662 5.90560 5.98419 6.04500 6.12382 6.17245 6.20887 6.28326 6.41813 6.55422 6.72208 7.11632 7.38105 7.43154 7.58795 7.77406 7.99238 8.69761 9.15883 9.75027 11.23964 Molecular weight = 243.17amu Principal moments of inertia in cm(-1) A = 0.022748 B = 0.007725 C = 0.007028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.597782 B = 3623.932695 C = 3982.907732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.079 3.921 3 H 0.079 0.921 4 C -0.094 4.094 5 C -0.005 4.005 6 C -0.517 4.517 7 H 0.067 0.933 8 C 0.065 3.935 9 N -0.910 5.910 10 Si 0.881 3.119 11 H -0.277 1.277 12 H -0.292 1.292 13 H -0.264 1.264 14 N -0.518 5.518 15 C 0.053 3.947 16 C -0.119 4.119 17 C -0.138 4.138 18 C 0.122 3.878 19 C -0.173 4.173 20 F -0.195 7.195 21 C 0.034 3.966 22 H 0.061 0.939 23 H 0.055 0.945 24 H 0.047 0.953 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.009 0.991 28 H 0.027 0.973 29 H 0.260 0.740 30 H 0.030 0.970 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.046 0.954 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.959 0.869 16.477 20.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.029 4.029 3 H 0.098 0.902 4 C -0.131 4.131 5 C -0.043 4.043 6 C -0.555 4.555 7 H 0.085 0.915 8 C -0.135 4.135 9 N -0.550 5.550 10 Si 0.709 3.291 11 H -0.203 1.203 12 H -0.219 1.219 13 H -0.189 1.189 14 N -0.242 5.242 15 C -0.075 4.075 16 C -0.157 4.157 17 C -0.176 4.176 18 C 0.103 3.897 19 C -0.231 4.231 20 F -0.175 7.175 21 C -0.095 4.095 22 H 0.080 0.920 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.027 0.973 28 H 0.045 0.955 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.064 0.936 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.250 0.791 16.325 19.842 hybrid contribution -0.082 0.372 0.586 0.699 sum -11.332 1.163 16.911 20.390 Atomic orbital electron populations 1.22493 0.98549 1.01751 1.01539 1.21932 0.91424 0.98565 0.90936 0.90239 1.21550 0.99375 0.98717 0.93496 1.19456 0.91090 0.96474 0.97249 1.21258 0.92683 1.38638 1.02936 0.91476 1.25010 0.98485 0.94912 0.95130 1.69931 1.14500 1.46305 1.24275 0.86744 0.80495 0.80253 0.81626 1.20259 1.21890 1.18891 1.61986 1.58725 1.01545 1.01919 1.22114 0.97670 0.97477 0.90273 1.21576 1.02051 0.94832 0.97224 1.22160 1.01726 0.96802 0.96919 1.20890 0.77642 0.95564 0.95568 1.22347 1.01336 0.95748 1.03621 1.92899 1.31675 1.96984 1.95987 1.22706 0.96257 0.91389 0.99133 0.92015 0.92577 0.93405 0.93009 0.92514 0.97257 0.95477 0.93011 0.95200 0.90709 0.90367 0.91480 0.90985 0.90876 0.90981 0.91451 0.91128 0.93605 0.88676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.41 8.45 37.16 0.31 -2.09 16 2 C 0.08 1.29 2.32 -67.71 -0.16 1.13 16 3 H 0.08 1.31 7.99 -51.93 -0.41 0.90 16 4 C -0.09 -1.89 4.53 -26.73 -0.12 -2.01 16 5 C -0.01 -0.13 3.86 -27.88 -0.11 -0.24 16 6 C -0.52 -15.41 9.66 -34.44 -0.33 -15.74 16 7 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 8 C 0.06 1.98 5.47 -17.82 -0.10 1.88 16 9 N -0.91 -29.25 13.96 55.43 0.77 -28.47 16 10 Si 0.88 23.30 27.47 -169.99 -4.67 18.63 16 11 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.29 -7.60 7.11 56.52 0.40 -7.19 16 13 H -0.26 -6.78 6.54 56.52 0.37 -6.41 16 14 N -0.52 -8.29 4.03 -226.69 -0.91 -9.21 16 15 C 0.05 0.68 5.13 -3.84 -0.02 0.66 16 16 C -0.12 -1.42 5.96 -26.65 -0.16 -1.58 16 17 C -0.14 -1.54 5.07 -26.61 -0.13 -1.67 16 18 C 0.12 1.66 1.27 -90.54 -0.11 1.55 16 19 C -0.17 -1.87 8.94 37.16 0.33 -1.54 16 20 F -0.19 -3.53 16.35 2.25 0.04 -3.49 16 21 C 0.03 0.49 3.58 -3.83 -0.01 0.47 16 22 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 23 H 0.06 0.71 6.46 -51.93 -0.34 0.38 16 24 H 0.05 0.56 6.81 -51.93 -0.35 0.20 16 25 H 0.05 1.04 6.26 -51.93 -0.33 0.72 16 26 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.01 0.23 7.20 -51.93 -0.37 -0.14 16 28 H 0.03 0.71 7.29 -51.93 -0.38 0.33 16 29 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 30 H 0.03 0.35 6.87 -51.93 -0.36 -0.01 16 31 H 0.07 0.96 8.02 -51.93 -0.42 0.55 16 32 H 0.08 1.11 7.91 -51.93 -0.41 0.70 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.57 6.58 -51.93 -0.34 0.23 16 40 H 0.10 1.58 6.14 -51.93 -0.32 1.26 16 LS Contribution 305.76 15.07 4.61 4.61 Total: -1.00 -32.81 305.76 -7.77 -40.58 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -6.99 Total: -3.48 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -0.61 Total: -19.17 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: -0.14 Total: -37.68 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.04 Total: -3.49 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -4.67 Total: 18.63 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.81 -7.77 -40.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491684.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.790 kcal (2) G-P(sol) polarization free energy of solvation -32.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds