Wall clock time and date at job start Sun Mar 29 2020 22:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47255 * 2 1 4 4 C 1.52999 * 109.47216 * 239.99588 * 2 1 3 5 5 C 1.53003 * 109.46737 * 176.23251 * 4 2 1 6 6 C 1.50702 * 109.46654 * 185.00080 * 5 4 2 7 7 H 1.07999 * 120.00481 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99802 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00254 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 120.00148 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.47387 * 89.99232 * 10 8 6 12 12 H 1.48489 * 109.47354 * 209.99662 * 10 8 6 13 13 H 1.48499 * 109.46828 * 329.99450 * 10 8 6 14 14 N 1.46899 * 109.46656 * 119.99750 * 2 1 3 15 15 C 1.46844 * 111.00529 * 290.08589 * 14 2 1 16 16 C 1.53036 * 109.52473 * 185.84249 * 15 14 2 17 17 C 1.53113 * 109.27887 * 300.81496 * 16 15 14 18 18 C 1.53123 * 109.15670 * 57.65582 * 17 16 15 19 19 C 1.53009 * 109.50029 * 182.40391 * 18 17 16 20 20 F 1.39903 * 109.50453 * 62.29011 * 18 17 16 21 21 C 1.46854 * 111.00080 * 54.29658 * 14 2 1 22 22 H 1.09000 * 109.46945 * 60.00338 * 1 2 3 23 23 H 1.09000 * 109.47255 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.47545 * 300.00282 * 1 2 3 25 25 H 1.09000 * 109.47378 * 296.23550 * 4 2 1 26 26 H 1.09007 * 109.46653 * 56.24062 * 4 2 1 27 27 H 1.08995 * 109.47502 * 305.00128 * 5 4 2 28 28 H 1.08998 * 109.47148 * 65.00926 * 5 4 2 29 29 H 0.96998 * 120.00559 * 180.02562 * 9 8 6 30 30 H 1.09001 * 109.46494 * 65.82181 * 15 14 2 31 31 H 1.09004 * 109.46090 * 305.85721 * 15 14 2 32 32 H 1.08995 * 109.50392 * 60.75840 * 16 15 14 33 33 H 1.09004 * 109.49914 * 180.87653 * 16 15 14 34 34 H 1.08996 * 109.52391 * 177.56162 * 17 16 15 35 35 H 1.08995 * 109.52775 * 297.75443 * 17 16 15 36 36 H 1.09004 * 109.46614 * 179.80341 * 19 18 17 37 37 H 1.08998 * 109.47263 * 299.80653 * 19 18 17 38 38 H 1.09000 * 109.47074 * 59.80962 * 19 18 17 39 39 H 1.08995 * 109.45973 * 294.17670 * 21 14 2 40 40 H 1.08997 * 109.45889 * 54.15005 * 21 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5671 -0.6397 -1.2974 6 6 4.0618 -1.2417 -2.5873 7 1 3.3575 -1.6421 -3.3015 8 6 5.4135 -1.2805 -2.8562 9 7 5.8454 -1.8063 -3.9817 10 14 6.6318 -0.5874 -1.6213 11 1 7.0415 -1.6570 -0.6762 12 1 7.8272 -0.0762 -2.3387 13 1 5.9951 0.5222 -0.8672 14 7 2.0196 -0.6925 1.1995 15 6 1.7511 0.0960 2.4089 16 6 2.4006 -0.5831 3.6168 17 6 1.8307 -1.9960 3.7693 18 6 2.0808 -2.7807 2.4785 19 6 1.4615 -4.1746 2.6000 20 9 3.4580 -2.8979 2.2624 21 6 1.4406 -2.0380 1.3035 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.7329 -1.7666 -1.2161 26 1 1.6227 -0.2479 -2.1379 27 1 3.8772 0.4037 -1.2409 28 1 3.9871 -1.1897 -0.4552 29 1 6.7963 -1.8339 -4.1708 30 1 0.6747 0.1648 2.5661 31 1 2.1651 1.0972 2.2890 32 1 3.4786 -0.6397 3.4664 33 1 2.1879 -0.0058 4.5166 34 1 2.3218 -2.4989 4.6023 35 1 0.7588 -1.9381 3.9585 36 1 1.6369 -4.7315 1.6795 37 1 1.9178 -4.7032 3.4370 38 1 0.3889 -4.0821 2.7700 39 1 0.3657 -1.9593 1.4659 40 1 1.6293 -2.5868 0.3809 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172491684.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:52 Heat of formation + Delta-G solvation = -87.169638 kcal Electronic energy + Delta-G solvation = -19031.018559 eV Core-core repulsion = 16179.359991 eV Total energy + Delta-G solvation = -2851.658568 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.169 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.45727 -40.24966 -36.65107 -34.98559 -33.32831 -32.36455 -30.52452 -27.81855 -27.19052 -25.47608 -23.16319 -22.46576 -21.16809 -20.18725 -18.82338 -17.61385 -16.47688 -16.37589 -16.25635 -15.79213 -15.71662 -15.32877 -14.88968 -14.51537 -14.33312 -14.06248 -13.57589 -13.50851 -13.46825 -13.28200 -13.00009 -12.96407 -12.76761 -12.50273 -12.25550 -11.96341 -11.80651 -11.71645 -11.51164 -11.35492 -11.25684 -11.13865 -10.88094 -10.74051 -9.01790 -8.28927 -6.30305 1.33565 1.36204 1.48963 2.36971 2.93280 3.07706 3.54250 3.68585 3.79159 3.86076 3.98656 4.18850 4.25131 4.32387 4.39987 4.53352 4.59005 4.62244 4.70544 4.72130 4.76659 4.89014 4.92967 4.96299 4.97514 5.06507 5.14426 5.20216 5.22898 5.26657 5.36026 5.47574 5.57338 5.68941 5.73997 6.24449 6.32130 6.35006 6.77999 7.34315 8.88083 Molecular weight = 243.17amu Principal moments of inertia in cm(-1) A = 0.022748 B = 0.007725 C = 0.007028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.597782 B = 3623.932695 C = 3982.907732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.086 3.914 3 H 0.077 0.923 4 C -0.088 4.088 5 C 0.006 3.994 6 C -0.529 4.529 7 H 0.031 0.969 8 C 0.006 3.994 9 N -0.953 5.953 10 Si 0.949 3.051 11 H -0.275 1.275 12 H -0.281 1.281 13 H -0.251 1.251 14 N -0.549 5.549 15 C 0.053 3.947 16 C -0.118 4.118 17 C -0.131 4.131 18 C 0.106 3.894 19 C -0.168 4.168 20 F -0.228 7.228 21 C 0.036 3.964 22 H 0.064 0.936 23 H 0.059 0.941 24 H 0.071 0.929 25 H 0.045 0.955 26 H 0.052 0.948 27 H 0.007 0.993 28 H 0.015 0.985 29 H 0.265 0.735 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.047 0.953 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.073 0.927 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.446 1.879 19.305 23.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.022 4.022 3 H 0.095 0.905 4 C -0.126 4.126 5 C -0.031 4.031 6 C -0.567 4.567 7 H 0.049 0.951 8 C -0.191 4.191 9 N -0.594 5.594 10 Si 0.773 3.227 11 H -0.201 1.201 12 H -0.207 1.207 13 H -0.175 1.175 14 N -0.273 5.273 15 C -0.075 4.075 16 C -0.156 4.156 17 C -0.169 4.169 18 C 0.087 3.913 19 C -0.226 4.226 20 F -0.209 7.209 21 C -0.093 4.093 22 H 0.083 0.917 23 H 0.078 0.922 24 H 0.090 0.910 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.026 0.974 28 H 0.034 0.966 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.114 0.886 34 H 0.099 0.901 35 H 0.120 0.880 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.117 0.883 39 H 0.091 0.909 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.754 1.806 19.161 23.088 hybrid contribution 0.352 0.006 -0.373 0.513 sum -12.402 1.812 18.788 22.585 Atomic orbital electron populations 1.22362 0.95571 1.02412 1.02896 1.21711 0.93706 0.97493 0.89271 0.90494 1.21422 0.95958 0.99165 0.96041 1.19296 0.94518 0.95297 0.94023 1.21650 0.92439 1.38461 1.04156 0.95080 1.25936 1.00659 0.95352 0.97107 1.70066 1.15248 1.47814 1.26313 0.85670 0.78114 0.79836 0.79058 1.20056 1.20652 1.17455 1.61897 1.60043 1.02482 1.02886 1.22184 0.99194 0.96927 0.89147 1.21589 1.00100 0.95911 0.98003 1.22153 1.03560 0.95693 0.95469 1.21348 0.75831 0.97482 0.96591 1.22332 1.02994 0.93970 1.03263 1.92830 1.34557 1.97227 1.96272 1.22670 0.97851 0.90538 0.98208 0.91655 0.92229 0.91039 0.93637 0.92970 0.97416 0.96649 0.92640 0.92788 0.90924 0.93430 0.88558 0.90075 0.87979 0.92518 0.90508 0.88281 0.90864 0.91879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.02 8.45 71.98 0.61 -3.41 16 2 C 0.09 2.68 2.32 44.92 0.10 2.78 16 3 H 0.08 2.42 7.99 -2.39 -0.02 2.40 16 4 C -0.09 -3.60 4.53 30.60 0.14 -3.46 16 5 C 0.01 0.31 3.86 29.85 0.12 0.43 16 6 C -0.53 -32.63 9.66 25.60 0.25 -32.38 16 7 H 0.03 2.07 7.99 -2.91 -0.02 2.05 16 8 C 0.01 0.35 5.47 84.65 0.46 0.82 16 9 N -0.95 -62.86 13.96 21.45 0.30 -62.56 16 10 Si 0.95 48.73 27.47 68.60 1.88 50.61 16 11 H -0.27 -13.97 7.11 99.48 0.71 -13.27 16 12 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 13 H -0.25 -12.22 6.54 99.48 0.65 -11.57 16 14 N -0.55 -16.71 4.03 -871.12 -3.51 -20.22 16 15 C 0.05 1.21 5.13 86.33 0.44 1.65 16 16 C -0.12 -2.49 5.96 30.64 0.18 -2.30 16 17 C -0.13 -2.47 5.07 30.67 0.16 -2.32 16 18 C 0.11 2.71 1.27 -10.74 -0.01 2.70 16 19 C -0.17 -3.30 8.94 71.99 0.64 -2.66 16 20 F -0.23 -8.30 16.35 44.97 0.74 -7.56 16 21 C 0.04 0.98 3.58 86.32 0.31 1.29 16 22 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.06 1.34 6.46 -2.39 -0.02 1.32 16 24 H 0.07 1.34 6.81 -2.39 -0.02 1.33 16 25 H 0.04 1.89 6.26 -2.39 -0.01 1.87 16 26 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 27 H 0.01 0.38 7.20 -2.39 -0.02 0.37 16 28 H 0.02 0.81 7.29 -2.39 -0.02 0.79 16 29 H 0.26 16.28 8.31 -92.71 -0.77 15.51 16 30 H 0.05 0.99 6.87 -2.39 -0.02 0.97 16 31 H 0.07 1.68 8.02 -2.39 -0.02 1.66 16 32 H 0.05 1.29 7.91 -2.39 -0.02 1.27 16 33 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.07 1.58 6.58 -2.39 -0.02 1.57 16 40 H 0.06 2.12 6.14 -2.39 -0.01 2.10 16 Total: -1.00 -73.39 305.76 3.73 -69.66 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: 0.93 Total: 6.92 kcal Atomic # 6 Polarization: -40.25 SS G_CDS: 3.40 Total: -36.85 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -3.21 Total: -82.78 kcal Atomic # 9 Polarization: -8.30 SS G_CDS: 0.74 Total: -7.56 kcal Atomic # 14 Polarization: 48.73 SS G_CDS: 1.88 Total: 50.61 kcal Total: -73.39 3.73 -69.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491684.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.509 kcal (2) G-P(sol) polarization free energy of solvation -73.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds