Wall clock time and date at job start Sun Mar 29 2020 22:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30495 * 1 3 3 Si 1.86806 * 120.00120 * 2 1 4 4 H 1.48503 * 109.47233 * 274.98776 * 3 2 1 5 5 H 1.48494 * 109.47085 * 34.99080 * 3 2 1 6 6 H 1.48502 * 109.47036 * 154.98649 * 3 2 1 7 7 C 1.40420 * 119.99819 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99891 * 186.22053 * 7 2 1 9 9 C 1.41709 * 120.00233 * 6.22200 * 7 2 1 10 10 O 1.21738 * 119.99465 * 353.69859 * 9 7 2 11 11 C 1.48061 * 119.99953 * 173.41969 * 9 7 2 12 12 C 1.39540 * 119.72995 * 180.02562 * 11 9 7 13 13 C 1.38498 * 119.04667 * 179.97438 * 12 11 9 14 14 C 1.38705 * 118.50546 * 359.97438 * 13 12 11 15 15 C 1.50693 * 120.31234 * 180.02562 * 14 13 12 16 16 F 1.39903 * 109.47189 * 90.00311 * 15 14 13 17 17 F 1.39900 * 109.47053 * 209.99930 * 15 14 13 18 18 F 1.39901 * 109.47312 * 330.00069 * 15 14 13 19 19 C 1.38610 * 119.37395 * 0.02562 * 14 13 12 20 20 N 1.31531 * 120.91344 * 359.73579 * 19 14 13 21 21 H 0.97008 * 119.99986 * 359.97438 * 1 2 3 22 22 H 1.08000 * 120.47709 * 359.95208 * 12 11 9 23 23 H 1.07998 * 120.74467 * 180.02562 * 13 12 11 24 24 H 1.08001 * 119.54695 * 180.02562 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3049 0.0000 0.0000 3 14 2.2390 1.6178 0.0000 4 1 2.3811 2.1073 -1.3948 5 1 1.4932 2.6199 0.8028 6 1 3.5853 1.4120 0.5920 7 6 2.0070 -1.2161 -0.0005 8 1 3.0823 -1.2189 0.1008 9 6 1.3047 -2.4397 -0.1341 10 8 0.0874 -2.4459 -0.1330 11 6 2.0516 -3.7096 -0.2812 12 6 1.3543 -4.9112 -0.4128 13 6 2.0671 -6.0907 -0.5501 14 6 3.4529 -6.0303 -0.5518 15 6 4.2688 -7.2887 -0.6992 16 9 4.5133 -7.5298 -2.0554 17 9 5.4856 -7.1370 -0.0258 18 9 3.5650 -8.3675 -0.1532 19 6 4.0801 -4.8017 -0.4167 20 7 3.3795 -3.6954 -0.2925 21 1 -0.4850 0.8401 0.0004 22 1 0.2744 -4.9212 -0.4074 23 1 1.5555 -7.0360 -0.6543 24 1 5.1589 -4.7514 -0.4180 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238570116.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:38 Heat of formation + Delta-G solvation = -160.714853 kcal Electronic energy + Delta-G solvation = -16863.552763 eV Core-core repulsion = 13326.973663 eV Total energy + Delta-G solvation = -3536.579100 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -50.09176 -47.61577 -47.55431 -39.76428 -36.57975 -32.92471 -32.69852 -31.18629 -27.61348 -25.83364 -23.37602 -22.70279 -20.23631 -18.43269 -18.40056 -18.23092 -16.99967 -16.04300 -15.59414 -14.67234 -14.42831 -14.33524 -14.12841 -14.00791 -13.76455 -13.73697 -13.66904 -13.13478 -13.00015 -12.73216 -11.90472 -11.59883 -11.42872 -11.09141 -10.45588 -10.43994 -9.70093 -9.20691 -9.13814 -8.72406 -7.72156 -6.51696 -5.04968 0.96093 1.58415 2.74868 2.98018 3.08066 3.13519 3.62757 3.82355 3.92028 4.11415 4.36199 4.57063 4.78684 4.97800 5.20249 5.42321 5.56679 5.88069 6.03014 6.22280 6.40982 6.95372 7.12989 8.06177 8.30368 8.57998 8.67001 10.08524 10.30241 Molecular weight = 245.04amu Principal moments of inertia in cm(-1) A = 0.045950 B = 0.005585 C = 0.005142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.216336 B = 5011.931410 C = 5444.002613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.724 5.724 2 C 0.070 3.930 3 Si 0.915 3.085 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.473 4.473 8 H 0.090 0.910 9 C 0.378 3.622 10 O -0.538 6.538 11 C 0.145 3.855 12 C -0.153 4.153 13 C -0.037 4.037 14 C -0.268 4.268 15 C 0.518 3.482 16 F -0.180 7.180 17 F -0.179 7.179 18 F -0.181 7.181 19 C 0.144 3.856 20 N -0.452 5.452 21 H 0.278 0.722 22 H 0.150 0.850 23 H 0.139 0.861 24 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.998 -9.372 -1.150 11.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.353 5.353 2 C -0.154 4.154 3 Si 0.739 3.261 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.181 1.181 7 C -0.504 4.504 8 H 0.108 0.892 9 C 0.274 3.726 10 O -0.427 6.427 11 C 0.009 3.991 12 C -0.173 4.173 13 C -0.062 4.062 14 C -0.272 4.272 15 C 0.464 3.536 16 F -0.161 7.161 17 F -0.160 7.160 18 F -0.162 7.162 19 C -0.017 4.017 20 N -0.162 5.162 21 H 0.089 0.911 22 H 0.168 0.832 23 H 0.157 0.843 24 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 6.652 -8.540 -1.067 10.878 hybrid contribution 0.300 -0.494 -0.169 0.602 sum 6.952 -9.034 -1.236 11.466 Atomic orbital electron populations 1.69949 1.07789 1.28729 1.28814 1.26175 0.94748 1.01580 0.92895 0.86201 0.80643 0.80094 0.79210 1.19283 1.20041 1.18109 1.21136 0.96448 0.90876 1.41958 0.89230 1.18038 0.88038 0.84767 0.81720 1.90536 1.14308 1.86576 1.51329 1.24063 0.89433 0.98369 0.87233 1.22350 1.02640 0.91777 1.00565 1.21263 0.91825 0.99560 0.93566 1.21021 0.95684 0.93999 1.16460 1.18163 0.77861 0.83930 0.73696 1.93210 1.94613 1.95160 1.33123 1.93173 1.46660 1.95723 1.80440 1.93167 1.78677 1.58521 1.85856 1.22734 1.00600 0.86426 0.91923 1.68149 1.08425 1.28184 1.11477 0.91106 0.83246 0.84345 0.82385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.93 11.76 55.57 0.65 -19.28 14 2 C 0.07 1.83 5.50 -17.30 -0.10 1.73 14 3 Si 0.92 18.76 29.57 -169.99 -5.03 13.74 14 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 14 5 H -0.28 -5.46 7.11 56.52 0.40 -5.06 14 6 H -0.26 -5.17 7.11 56.52 0.40 -4.77 14 7 C -0.47 -12.80 9.00 -37.44 -0.34 -13.14 14 8 H 0.09 2.30 7.39 -52.48 -0.39 1.92 14 9 C 0.38 10.38 6.91 -34.23 -0.24 10.15 14 10 O -0.54 -16.29 14.90 5.16 0.08 -16.21 14 11 C 0.14 3.34 6.73 -82.93 -0.56 2.78 14 12 C -0.15 -2.99 9.64 -39.00 -0.38 -3.37 14 13 C -0.04 -0.59 9.51 -39.31 -0.37 -0.96 14 14 C -0.27 -4.22 5.48 -104.32 -0.57 -4.79 14 15 C 0.52 7.13 3.38 36.00 0.12 7.25 14 16 F -0.18 -2.48 17.30 2.25 0.04 -2.44 14 17 F -0.18 -2.39 16.48 2.25 0.04 -2.35 14 18 F -0.18 -2.43 16.52 2.25 0.04 -2.39 14 19 C 0.14 2.46 10.56 -17.54 -0.19 2.28 14 20 N -0.45 -9.59 9.45 -9.74 -0.09 -9.68 14 21 H 0.28 6.79 8.29 -40.82 -0.34 6.46 14 22 H 0.15 2.87 7.65 -52.49 -0.40 2.47 14 23 H 0.14 1.78 7.68 -52.49 -0.40 1.38 14 24 H 0.16 2.21 7.61 -52.49 -0.40 1.81 14 LS Contribution 242.61 15.07 3.66 3.66 Total: -1.00 -29.86 242.61 -3.96 -33.81 By element: Atomic # 1 Polarization: -0.05 SS G_CDS: -0.72 Total: -0.78 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -2.61 Total: 1.93 kcal Atomic # 7 Polarization: -29.52 SS G_CDS: 0.56 Total: -28.96 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: 0.08 Total: -16.21 kcal Atomic # 9 Polarization: -7.30 SS G_CDS: 0.11 Total: -7.18 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -29.86 -3.96 -33.81 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238570116.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.903 kcal (2) G-P(sol) polarization free energy of solvation -29.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds