Wall clock time and date at job start Sun Mar 29 2020 22:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30495 * 1 3 3 Si 1.86806 * 120.00120 * 2 1 4 4 H 1.48503 * 109.47233 * 274.98776 * 3 2 1 5 5 H 1.48494 * 109.47085 * 34.99080 * 3 2 1 6 6 H 1.48502 * 109.47036 * 154.98649 * 3 2 1 7 7 C 1.40420 * 119.99819 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99891 * 186.22053 * 7 2 1 9 9 C 1.41709 * 120.00233 * 6.22200 * 7 2 1 10 10 O 1.21738 * 119.99465 * 353.69859 * 9 7 2 11 11 C 1.48061 * 119.99953 * 173.41969 * 9 7 2 12 12 C 1.39540 * 119.72995 * 180.02562 * 11 9 7 13 13 C 1.38498 * 119.04667 * 179.97438 * 12 11 9 14 14 C 1.38705 * 118.50546 * 359.97438 * 13 12 11 15 15 C 1.50693 * 120.31234 * 180.02562 * 14 13 12 16 16 F 1.39903 * 109.47189 * 90.00311 * 15 14 13 17 17 F 1.39900 * 109.47053 * 209.99930 * 15 14 13 18 18 F 1.39901 * 109.47312 * 330.00069 * 15 14 13 19 19 C 1.38610 * 119.37395 * 0.02562 * 14 13 12 20 20 N 1.31531 * 120.91344 * 359.73579 * 19 14 13 21 21 H 0.97008 * 119.99986 * 359.97438 * 1 2 3 22 22 H 1.08000 * 120.47709 * 359.95208 * 12 11 9 23 23 H 1.07998 * 120.74467 * 180.02562 * 13 12 11 24 24 H 1.08001 * 119.54695 * 180.02562 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3049 0.0000 0.0000 3 14 2.2390 1.6178 0.0000 4 1 2.3811 2.1073 -1.3948 5 1 1.4932 2.6199 0.8028 6 1 3.5853 1.4120 0.5920 7 6 2.0070 -1.2161 -0.0005 8 1 3.0823 -1.2189 0.1008 9 6 1.3047 -2.4397 -0.1341 10 8 0.0874 -2.4459 -0.1330 11 6 2.0516 -3.7096 -0.2812 12 6 1.3543 -4.9112 -0.4128 13 6 2.0671 -6.0907 -0.5501 14 6 3.4529 -6.0303 -0.5518 15 6 4.2688 -7.2887 -0.6992 16 9 4.5133 -7.5298 -2.0554 17 9 5.4856 -7.1370 -0.0258 18 9 3.5650 -8.3675 -0.1532 19 6 4.0801 -4.8017 -0.4167 20 7 3.3795 -3.6954 -0.2925 21 1 -0.4850 0.8401 0.0004 22 1 0.2744 -4.9212 -0.4074 23 1 1.5555 -7.0360 -0.6543 24 1 5.1589 -4.7514 -0.4180 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238570116.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:38 Heat of formation + Delta-G solvation = -179.759546 kcal Electronic energy + Delta-G solvation = -16864.378603 eV Core-core repulsion = 13326.973663 eV Total energy + Delta-G solvation = -3537.404940 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.040 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -51.19826 -48.70526 -48.65748 -41.29923 -38.58665 -34.92362 -34.17578 -32.71781 -29.50623 -27.33978 -24.83766 -24.18292 -21.99688 -19.62597 -19.53002 -19.44185 -18.78925 -17.79613 -17.26196 -16.23536 -15.71892 -15.55919 -15.44040 -15.26662 -15.10468 -14.92111 -14.85288 -14.81084 -14.54570 -14.15395 -13.83798 -13.33550 -12.90200 -12.76683 -12.45095 -12.04216 -11.16479 -11.04086 -10.78208 -10.30276 -9.74272 -8.46787 -7.15509 -0.55550 0.16062 1.34198 1.39096 1.56033 1.57108 1.94994 2.20058 2.61204 2.63319 2.95246 3.33976 3.36460 3.57260 3.66649 3.73689 4.02988 4.29692 4.65250 4.76805 4.91554 5.14015 5.45403 6.01174 6.55007 6.60930 6.86432 8.07963 8.35972 Molecular weight = 245.04amu Principal moments of inertia in cm(-1) A = 0.045950 B = 0.005585 C = 0.005142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.216336 B = 5011.931410 C = 5444.002613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.020 3.980 3 Si 0.999 3.001 4 H -0.258 1.258 5 H -0.263 1.263 6 H -0.249 1.249 7 C -0.506 4.506 8 H 0.095 0.905 9 C 0.357 3.643 10 O -0.584 6.584 11 C 0.109 3.891 12 C -0.159 4.159 13 C -0.018 4.018 14 C -0.252 4.252 15 C 0.532 3.468 16 F -0.175 7.175 17 F -0.172 7.172 18 F -0.174 7.174 19 C 0.142 3.858 20 N -0.475 5.475 21 H 0.288 0.712 22 H 0.144 0.856 23 H 0.179 0.821 24 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.964 -10.344 -1.368 13.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.200 4.200 3 Si 0.817 3.183 4 H -0.183 1.183 5 H -0.187 1.187 6 H -0.172 1.172 7 C -0.536 4.536 8 H 0.113 0.887 9 C 0.257 3.743 10 O -0.477 6.477 11 C -0.026 4.026 12 C -0.179 4.179 13 C -0.043 4.043 14 C -0.256 4.256 15 C 0.477 3.523 16 F -0.157 7.157 17 F -0.153 7.153 18 F -0.155 7.155 19 C -0.018 4.018 20 N -0.185 5.185 21 H 0.098 0.902 22 H 0.162 0.838 23 H 0.196 0.804 24 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 8.629 -9.533 -1.284 12.922 hybrid contribution -0.242 -0.387 -0.112 0.470 sum 8.387 -9.920 -1.396 13.065 Atomic orbital electron populations 1.70045 1.09876 1.30505 1.29698 1.27357 0.95592 1.05665 0.91415 0.84974 0.79142 0.74428 0.79747 1.18281 1.18693 1.17236 1.21499 0.96878 0.91973 1.43237 0.88723 1.18568 0.87904 0.87082 0.80740 1.90472 1.16029 1.87999 1.53230 1.23313 0.90412 0.97660 0.91181 1.22300 1.02545 0.92043 1.00992 1.21602 0.91987 0.99652 0.91090 1.21272 0.95893 0.94744 1.13703 1.17702 0.77687 0.82974 0.73896 1.93232 1.94548 1.95029 1.32871 1.93199 1.46149 1.95662 1.80329 1.93194 1.78581 1.57958 1.85770 1.23240 1.01865 0.85868 0.90856 1.67988 1.07732 1.30508 1.12318 0.90164 0.83826 0.80397 0.79083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -44.09 11.76 21.90 0.26 -43.83 14 2 C 0.02 1.06 5.50 85.42 0.47 1.53 14 3 Si 1.00 38.70 29.57 68.60 2.03 40.73 14 4 H -0.26 -9.55 7.11 99.48 0.71 -8.84 14 5 H -0.26 -9.54 7.11 99.48 0.71 -8.83 14 6 H -0.25 -9.21 7.11 99.48 0.71 -8.50 14 7 C -0.51 -28.34 9.00 23.66 0.21 -28.13 14 8 H 0.09 5.01 7.39 -2.91 -0.02 4.99 14 9 C 0.36 20.61 6.91 25.74 0.18 20.78 14 10 O -0.58 -37.42 14.90 -4.47 -0.07 -37.48 14 11 C 0.11 5.15 6.73 41.92 0.28 5.43 14 12 C -0.16 -6.20 9.64 22.65 0.22 -5.98 14 13 C -0.02 -0.53 9.51 22.44 0.21 -0.32 14 14 C -0.25 -7.17 5.48 -19.67 -0.11 -7.27 14 15 C 0.53 12.51 3.38 71.23 0.24 12.75 14 16 F -0.18 -4.16 17.30 44.97 0.78 -3.38 14 17 F -0.17 -3.92 16.48 44.97 0.74 -3.18 14 18 F -0.17 -3.92 16.52 44.97 0.74 -3.18 14 19 C 0.14 4.56 10.56 84.83 0.90 5.45 14 20 N -0.48 -20.04 9.45 -184.73 -1.75 -21.78 14 21 H 0.29 14.49 8.29 -92.70 -0.77 13.72 14 22 H 0.14 5.69 7.65 -2.91 -0.02 5.67 14 23 H 0.18 3.82 7.68 -2.91 -0.02 3.80 14 24 H 0.19 4.70 7.61 -2.91 -0.02 4.68 14 Total: -1.00 -67.77 242.61 6.60 -61.17 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: 1.26 Total: 6.69 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 2.60 Total: 4.25 kcal Atomic # 7 Polarization: -64.12 SS G_CDS: -1.49 Total: -65.61 kcal Atomic # 8 Polarization: -37.42 SS G_CDS: -0.07 Total: -37.48 kcal Atomic # 9 Polarization: -12.00 SS G_CDS: 2.26 Total: -9.73 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 2.03 Total: 40.73 kcal Total: -67.77 6.60 -61.17 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238570116.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.594 kcal (2) G-P(sol) polarization free energy of solvation -67.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds