Wall clock time and date at job start Sun Mar 29 2020 22:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99585 * 2 1 4 4 H 1.48499 * 109.46808 * 269.99690 * 3 2 1 5 5 H 1.48501 * 109.47149 * 29.99782 * 3 2 1 6 6 H 1.48500 * 109.46837 * 150.00022 * 3 2 1 7 7 C 1.37873 * 120.00632 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99944 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00493 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.47453 * 180.02562 * 9 7 2 11 11 C 1.46897 * 111.00303 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47223 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.46430 * 60.00318 * 12 11 10 14 14 O 1.42893 * 109.47124 * 300.00240 * 12 11 10 15 15 C 1.53002 * 109.46740 * 179.97438 * 12 11 10 16 16 N 1.46908 * 109.46707 * 185.00019 * 15 12 11 17 17 C 1.47024 * 110.99261 * 46.32476 * 16 15 12 18 18 C 1.53103 * 109.24985 * 182.34870 * 17 16 15 19 19 O 1.43012 * 109.29295 * 303.21723 * 18 17 16 20 20 C 1.43011 * 113.74271 * 58.65008 * 19 18 17 21 21 C 1.47018 * 110.99661 * 170.00016 * 16 15 12 22 22 H 0.97000 * 120.00505 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.46902 * 59.99732 * 9 7 2 24 24 H 1.09001 * 109.46994 * 300.00256 * 9 7 2 25 25 H 1.00899 * 110.99957 * 56.03801 * 10 9 7 26 26 H 1.09000 * 109.46930 * 59.99580 * 11 10 9 27 27 H 1.09004 * 109.47092 * 300.00063 * 11 10 9 28 28 H 0.96706 * 114.00076 * 299.99720 * 14 12 11 29 29 H 1.09003 * 109.46906 * 65.00534 * 15 12 11 30 30 H 1.08999 * 109.47302 * 305.00033 * 15 12 11 31 31 H 1.08998 * 109.47369 * 62.43595 * 17 16 15 32 32 H 1.08998 * 109.54483 * 302.29802 * 17 16 15 33 33 H 1.09002 * 109.50635 * 183.25881 * 18 17 16 34 34 H 1.09003 * 109.50698 * 63.17493 * 18 17 16 35 35 H 1.08997 * 109.50806 * 61.26171 * 20 19 18 36 36 H 1.08997 * 109.50924 * 181.35636 * 20 19 18 37 37 H 1.08994 * 109.50209 * 57.67478 * 21 16 15 38 38 H 1.08997 * 109.50514 * 297.54292 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 7 4.0014 -2.5789 0.0010 11 6 5.4698 -2.6180 0.0009 12 6 5.9412 -4.0736 0.0015 13 1 5.5643 -4.5777 -0.8884 14 8 5.4472 -4.7338 1.1684 15 6 7.4707 -4.1142 0.0008 16 7 7.9234 -5.5066 -0.1195 17 6 7.1858 -6.2107 -1.1786 18 6 7.6464 -7.6699 -1.2301 19 8 9.0612 -7.7118 -1.4347 20 6 9.8100 -7.0364 -0.4206 21 6 9.3721 -5.5705 -0.3616 22 1 -0.4851 0.8400 -0.0004 23 1 3.8746 -0.6798 0.8911 24 1 3.8753 -0.6802 -0.8888 25 1 3.6261 -3.0950 -0.7805 26 1 5.8467 -2.1140 0.8909 27 1 5.8467 -2.1139 -0.8890 28 1 5.7432 -4.3378 1.9995 29 1 7.8459 -3.6893 0.9318 30 1 7.8492 -3.5351 -0.8415 31 1 7.3830 -5.7327 -2.1381 32 1 6.1175 -6.1736 -0.9654 33 1 7.1445 -8.1813 -2.0515 34 1 7.3999 -8.1628 -0.2896 35 1 9.6265 -7.5101 0.5437 36 1 10.8728 -7.0901 -0.6562 37 1 9.8990 -5.0655 0.4480 38 1 9.6048 -5.0827 -1.3081 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380198115.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:19 Heat of formation + Delta-G solvation = -83.384189 kcal Electronic energy + Delta-G solvation = -17978.890093 eV Core-core repulsion = 15049.596974 eV Total energy + Delta-G solvation = -2929.293119 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 244.157 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.91357 -37.88124 -35.50451 -34.64166 -32.37852 -31.46069 -30.28298 -28.14405 -26.14995 -24.36684 -23.41116 -21.39387 -21.10837 -20.37516 -17.22243 -16.64486 -16.45680 -16.08024 -15.72447 -15.35669 -15.27879 -14.71662 -14.42501 -14.13313 -13.80586 -13.72483 -12.96697 -12.52937 -12.45046 -12.18387 -11.93550 -11.68541 -11.57185 -11.54459 -10.82707 -10.75135 -10.65510 -10.53242 -9.95172 -9.88038 -9.54946 -9.26752 -8.62294 -8.56598 -7.50223 -6.07531 -4.05730 3.25607 3.33335 3.35355 3.46480 3.66351 4.39420 4.45010 4.60662 4.70612 4.76001 4.90901 4.99458 4.99562 5.08455 5.24372 5.27244 5.33021 5.35853 5.42095 5.52663 5.56390 5.59125 5.71527 5.75886 5.93503 6.20443 6.69411 6.71906 6.73668 6.90690 6.95987 7.56937 7.84150 7.95551 8.29131 8.62747 9.01304 9.53960 11.05809 Molecular weight = 244.16amu Principal moments of inertia in cm(-1) A = 0.054432 B = 0.003878 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.277869 B = 7219.329702 C = 7452.987741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.516 4.516 8 H 0.080 0.920 9 C 0.164 3.836 10 N -0.668 5.668 11 C 0.025 3.975 12 C 0.109 3.891 13 H 0.096 0.904 14 O -0.536 6.536 15 C 0.023 3.977 16 N -0.526 5.526 17 C 0.009 3.991 18 C 0.064 3.936 19 O -0.389 6.389 20 C 0.065 3.935 21 C 0.016 3.984 22 H 0.264 0.736 23 H 0.026 0.974 24 H -0.023 1.023 25 H 0.335 0.665 26 H 0.068 0.932 27 H 0.024 0.976 28 H 0.372 0.628 29 H 0.081 0.919 30 H 0.042 0.958 31 H 0.039 0.961 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.140 -11.250 -1.243 23.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.554 4.554 8 H 0.098 0.902 9 C 0.036 3.964 10 N -0.299 5.299 11 C -0.106 4.106 12 C 0.049 3.951 13 H 0.114 0.886 14 O -0.340 6.340 15 C -0.106 4.106 16 N -0.251 5.251 17 C -0.118 4.118 18 C -0.012 4.012 19 O -0.308 6.308 20 C -0.012 4.012 21 C -0.113 4.113 22 H 0.074 0.926 23 H 0.044 0.956 24 H -0.005 1.005 25 H 0.153 0.847 26 H 0.086 0.914 27 H 0.042 0.958 28 H 0.218 0.782 29 H 0.100 0.900 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.113 0.887 37 H 0.103 0.897 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 19.627 -11.900 -0.711 22.964 hybrid contribution 0.943 2.390 -1.102 2.796 sum 20.570 -9.510 -1.813 22.734 Atomic orbital electron populations 1.69897 1.06147 1.26893 1.50905 1.24914 0.94763 0.98935 0.94758 0.86811 0.80280 0.83896 0.78392 1.20387 1.21082 1.19279 1.21059 0.88887 0.94882 1.50601 0.90200 1.20026 0.96787 0.84942 0.94612 1.60385 1.03460 1.16452 1.49574 1.22616 0.92114 0.95519 1.00358 1.22002 0.89889 0.92848 0.90369 0.88606 1.86581 1.75154 1.57176 1.15081 1.22920 0.97308 0.88543 1.01791 1.62195 1.03263 1.14524 1.45127 1.22948 1.00716 0.95225 0.92955 1.22686 0.81038 0.95266 1.02254 1.87966 1.18097 1.75908 1.48796 1.22633 0.95804 0.90721 0.92076 1.22817 0.89460 0.98159 1.00839 0.92614 0.95641 1.00501 0.84738 0.91375 0.95813 0.78185 0.90021 0.94017 0.94232 0.88120 0.88435 0.92022 0.92213 0.88652 0.89733 0.94137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.83 13.96 55.43 0.77 -27.05 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 7 C -0.52 -14.93 9.87 -34.44 -0.34 -15.27 16 8 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 9 C 0.16 4.00 4.51 -4.98 -0.02 3.98 16 10 N -0.67 -13.78 6.36 -115.06 -0.73 -14.51 16 11 C 0.03 0.40 5.35 -3.83 -0.02 0.38 16 12 C 0.11 1.44 2.56 -26.73 -0.07 1.37 16 13 H 0.10 1.29 5.95 -51.93 -0.31 0.98 16 14 O -0.54 -7.85 13.15 -35.23 -0.46 -8.32 16 15 C 0.02 0.25 4.92 -3.82 -0.02 0.23 16 16 N -0.53 -5.73 4.82 -234.29 -1.13 -6.86 16 17 C 0.01 0.10 4.94 -3.70 -0.02 0.08 16 18 C 0.06 0.64 7.01 37.21 0.26 0.90 16 19 O -0.39 -4.30 10.83 -35.23 -0.38 -4.68 16 20 C 0.06 0.57 7.01 37.21 0.26 0.83 16 21 C 0.02 0.14 5.63 -3.71 -0.02 0.12 16 22 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 23 H 0.03 0.64 7.20 -51.93 -0.37 0.26 16 24 H -0.02 -0.54 7.57 -51.93 -0.39 -0.94 16 25 H 0.34 6.80 8.72 -39.29 -0.34 6.46 16 26 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.37 4.49 9.05 45.56 0.41 4.90 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.04 0.45 8.08 -51.93 -0.42 0.03 16 31 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.10 1.16 5.94 -51.93 -0.31 0.86 16 33 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 304.89 15.07 4.59 4.59 Total: -1.00 -32.50 304.89 -7.64 -40.15 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -5.55 Total: 5.20 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -0.09 Total: -5.47 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: -1.09 Total: -48.43 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -0.84 Total: -13.00 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.50 -7.64 -40.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380198115.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.236 kcal (2) G-P(sol) polarization free energy of solvation -32.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds