Wall clock time and date at job start Sun Mar 29 2020 22:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99585 * 2 1 4 4 H 1.48499 * 109.46808 * 269.99690 * 3 2 1 5 5 H 1.48501 * 109.47149 * 29.99782 * 3 2 1 6 6 H 1.48500 * 109.46837 * 150.00022 * 3 2 1 7 7 C 1.37873 * 120.00632 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99944 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00493 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.47453 * 180.02562 * 9 7 2 11 11 C 1.46897 * 111.00303 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47223 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.46430 * 60.00318 * 12 11 10 14 14 O 1.42893 * 109.47124 * 300.00240 * 12 11 10 15 15 C 1.53002 * 109.46740 * 179.97438 * 12 11 10 16 16 N 1.46908 * 109.46707 * 185.00019 * 15 12 11 17 17 C 1.47024 * 110.99261 * 46.32476 * 16 15 12 18 18 C 1.53103 * 109.24985 * 182.34870 * 17 16 15 19 19 O 1.43012 * 109.29295 * 303.21723 * 18 17 16 20 20 C 1.43011 * 113.74271 * 58.65008 * 19 18 17 21 21 C 1.47018 * 110.99661 * 170.00016 * 16 15 12 22 22 H 0.97000 * 120.00505 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.46902 * 59.99732 * 9 7 2 24 24 H 1.09001 * 109.46994 * 300.00256 * 9 7 2 25 25 H 1.00899 * 110.99957 * 56.03801 * 10 9 7 26 26 H 1.09000 * 109.46930 * 59.99580 * 11 10 9 27 27 H 1.09004 * 109.47092 * 300.00063 * 11 10 9 28 28 H 0.96706 * 114.00076 * 299.99720 * 14 12 11 29 29 H 1.09003 * 109.46906 * 65.00534 * 15 12 11 30 30 H 1.08999 * 109.47302 * 305.00033 * 15 12 11 31 31 H 1.08998 * 109.47369 * 62.43595 * 17 16 15 32 32 H 1.08998 * 109.54483 * 302.29802 * 17 16 15 33 33 H 1.09002 * 109.50635 * 183.25881 * 18 17 16 34 34 H 1.09003 * 109.50698 * 63.17493 * 18 17 16 35 35 H 1.08997 * 109.50806 * 61.26171 * 20 19 18 36 36 H 1.08997 * 109.50924 * 181.35636 * 20 19 18 37 37 H 1.08994 * 109.50209 * 57.67478 * 21 16 15 38 38 H 1.08997 * 109.50514 * 297.54292 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 7 4.0014 -2.5789 0.0010 11 6 5.4698 -2.6180 0.0009 12 6 5.9412 -4.0736 0.0015 13 1 5.5643 -4.5777 -0.8884 14 8 5.4472 -4.7338 1.1684 15 6 7.4707 -4.1142 0.0008 16 7 7.9234 -5.5066 -0.1195 17 6 7.1858 -6.2107 -1.1786 18 6 7.6464 -7.6699 -1.2301 19 8 9.0612 -7.7118 -1.4347 20 6 9.8100 -7.0364 -0.4206 21 6 9.3721 -5.5705 -0.3616 22 1 -0.4851 0.8400 -0.0004 23 1 3.8746 -0.6798 0.8911 24 1 3.8753 -0.6802 -0.8888 25 1 3.6261 -3.0950 -0.7805 26 1 5.8467 -2.1140 0.8909 27 1 5.8467 -2.1139 -0.8890 28 1 5.7432 -4.3378 1.9995 29 1 7.8459 -3.6893 0.9318 30 1 7.8492 -3.5351 -0.8415 31 1 7.3830 -5.7327 -2.1381 32 1 6.1175 -6.1736 -0.9654 33 1 7.1445 -8.1813 -2.0515 34 1 7.3999 -8.1628 -0.2896 35 1 9.6265 -7.5101 0.5437 36 1 10.8728 -7.0901 -0.6562 37 1 9.8990 -5.0655 0.4480 38 1 9.6048 -5.0827 -1.3081 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380198115.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:19 Heat of formation + Delta-G solvation = -112.677902 kcal Electronic energy + Delta-G solvation = -17980.160364 eV Core-core repulsion = 15049.596974 eV Total energy + Delta-G solvation = -2930.563390 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 244.157 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.73490 -38.95248 -36.75016 -35.94910 -34.44837 -32.21829 -31.51714 -29.59587 -27.48211 -25.16362 -24.65564 -22.99999 -22.39594 -21.22880 -19.07585 -17.84712 -17.41437 -17.11631 -16.70989 -16.58210 -16.05839 -15.97637 -15.82615 -15.40233 -15.22009 -14.76701 -14.49620 -14.22182 -13.68763 -13.33992 -13.09798 -12.87354 -12.62215 -12.55956 -12.46356 -12.31496 -11.82690 -11.63703 -11.54060 -11.48601 -10.84802 -10.82699 -10.56062 -9.38154 -9.13554 -8.31588 -6.36860 1.33210 1.35881 1.47040 2.32622 2.63742 2.94424 3.02069 3.33724 3.65549 3.85960 3.91526 4.00161 4.13234 4.15876 4.18551 4.30853 4.34897 4.48132 4.60720 4.64641 4.68966 4.73535 4.76618 4.81000 4.90465 5.00029 5.03746 5.13367 5.50273 5.85990 5.92919 5.96997 6.16920 6.51582 6.62571 6.73194 6.99629 7.28203 8.85436 Molecular weight = 244.16amu Principal moments of inertia in cm(-1) A = 0.054432 B = 0.003878 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.277869 B = 7219.329702 C = 7452.987741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.006 3.994 3 Si 0.956 3.044 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.249 1.249 7 C -0.531 4.531 8 H 0.034 0.966 9 C 0.175 3.825 10 N -0.681 5.681 11 C 0.026 3.974 12 C 0.119 3.881 13 H 0.090 0.910 14 O -0.555 6.555 15 C 0.032 3.968 16 N -0.536 5.536 17 C 0.011 3.989 18 C 0.065 3.935 19 O -0.406 6.406 20 C 0.061 3.939 21 C 0.016 3.984 22 H 0.268 0.732 23 H 0.027 0.973 24 H -0.015 1.015 25 H 0.334 0.666 26 H 0.076 0.924 27 H 0.035 0.965 28 H 0.382 0.618 29 H 0.095 0.905 30 H 0.048 0.952 31 H 0.036 0.964 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.117 0.883 37 H 0.101 0.899 38 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.800 -10.414 -1.152 25.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.192 4.192 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.172 1.172 7 C -0.569 4.569 8 H 0.052 0.948 9 C 0.047 3.953 10 N -0.311 5.311 11 C -0.104 4.104 12 C 0.059 3.941 13 H 0.108 0.892 14 O -0.361 6.361 15 C -0.096 4.096 16 N -0.261 5.261 17 C -0.117 4.117 18 C -0.012 4.012 19 O -0.325 6.325 20 C -0.016 4.016 21 C -0.112 4.112 22 H 0.077 0.923 23 H 0.045 0.955 24 H 0.003 0.997 25 H 0.151 0.849 26 H 0.095 0.905 27 H 0.053 0.947 28 H 0.230 0.770 29 H 0.113 0.887 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.107 0.893 33 H 0.128 0.872 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.135 0.865 37 H 0.119 0.881 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 22.317 -11.086 -0.614 24.926 hybrid contribution 0.083 2.015 -1.116 2.305 sum 22.399 -9.071 -1.731 24.228 Atomic orbital electron populations 1.70060 1.08276 1.28315 1.52211 1.25939 0.95691 1.03493 0.94061 0.85598 0.79328 0.78065 0.79172 1.19100 1.20578 1.17222 1.21355 0.91550 0.93391 1.50627 0.94754 1.19767 0.93637 0.87201 0.94743 1.60275 1.06738 1.14293 1.49826 1.22717 0.88861 0.97607 1.01195 1.21885 0.91561 0.90847 0.89812 0.89194 1.86558 1.75770 1.57718 1.16005 1.22787 0.95179 0.88923 1.02747 1.62214 1.04339 1.14332 1.45221 1.22897 1.00134 0.95847 0.92822 1.22720 0.80943 0.94801 1.02695 1.87946 1.18474 1.76316 1.49733 1.22812 0.96725 0.90281 0.91740 1.22883 0.88365 0.98575 1.01337 0.92294 0.95512 0.99714 0.84935 0.90528 0.94703 0.76995 0.88687 0.93410 0.94550 0.89261 0.87195 0.92299 0.92138 0.86524 0.88061 0.94412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.91 13.96 21.45 0.30 -59.61 16 2 C 0.01 0.33 5.47 84.65 0.46 0.79 16 3 Si 0.96 43.95 27.47 68.60 1.88 45.84 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.25 -10.58 6.54 99.48 0.65 -9.93 16 7 C -0.53 -31.29 9.87 25.60 0.25 -31.04 16 8 H 0.03 2.26 8.06 -2.91 -0.02 2.24 16 9 C 0.18 8.36 4.51 85.56 0.39 8.75 16 10 N -0.68 -27.67 6.36 -517.93 -3.29 -30.96 16 11 C 0.03 0.79 5.35 86.30 0.46 1.25 16 12 C 0.12 2.96 2.56 30.59 0.08 3.04 16 13 H 0.09 2.35 5.95 -2.39 -0.01 2.34 16 14 O -0.55 -15.63 13.15 -148.98 -1.96 -17.59 16 15 C 0.03 0.62 4.92 86.30 0.42 1.05 16 16 N -0.54 -10.64 4.82 -895.15 -4.32 -14.96 16 17 C 0.01 0.23 4.94 86.31 0.43 0.65 16 18 C 0.07 1.23 7.01 72.02 0.50 1.74 16 19 O -0.41 -8.36 10.83 -148.98 -1.61 -9.97 16 20 C 0.06 0.95 7.01 72.02 0.50 1.45 16 21 C 0.02 0.26 5.63 86.31 0.49 0.75 16 22 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 23 H 0.03 1.28 7.20 -2.39 -0.02 1.26 16 24 H -0.01 -0.68 7.57 -2.39 -0.02 -0.70 16 25 H 0.33 13.62 8.72 -89.69 -0.78 12.84 16 26 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.38 8.66 9.05 -74.05 -0.67 7.99 16 29 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.05 0.89 8.08 -2.39 -0.02 0.87 16 31 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.09 2.03 5.94 -2.39 -0.01 2.01 16 33 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.04 0.63 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -70.09 304.89 -5.47 -75.56 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: -0.46 Total: 23.27 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: 3.99 Total: -11.58 kcal Atomic # 7 Polarization: -98.22 SS G_CDS: -7.31 Total: -105.53 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -3.57 Total: -27.56 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.88 Total: 45.84 kcal Total: -70.09 -5.47 -75.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380198115.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.118 kcal (2) G-P(sol) polarization free energy of solvation -70.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds