Wall clock time and date at job start Sun Mar 29 2020 22:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46970 * 2 1 4 4 C 1.52997 * 109.47404 * 240.00049 * 2 1 3 5 5 C 1.50701 * 109.47212 * 174.99684 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47432 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46890 * 120.00210 * 9 7 5 12 12 H 1.48501 * 109.47062 * 240.00257 * 9 7 5 13 13 S 1.80998 * 109.47146 * 119.99578 * 2 1 3 14 14 C 1.76199 * 100.00463 * 295.00301 * 13 2 1 15 15 N 1.28534 * 125.01557 * 359.97438 * 14 13 2 16 16 C 1.44592 * 119.82993 * 179.97438 * 15 14 13 17 17 H 1.09008 * 109.12907 * 120.47042 * 16 15 14 18 18 C 1.52999 * 109.13745 * 239.52968 * 16 15 14 19 19 C 1.53670 * 111.24344 * 0.02562 * 16 15 14 20 20 S 1.76757 * 125.01752 * 179.69334 * 14 13 2 21 21 H 1.09008 * 109.46970 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47654 * 299.99762 * 1 2 3 23 23 H 1.09000 * 109.47476 * 60.00038 * 1 2 3 24 24 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 25 25 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 26 26 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 27 27 H 1.08998 * 109.46830 * 58.54363 * 18 16 15 28 28 H 1.08991 * 109.47266 * 178.54624 * 18 16 15 29 29 H 1.09003 * 109.46857 * 298.54739 * 18 16 15 30 30 H 1.08999 * 110.65658 * 118.44639 * 19 16 15 31 31 H 1.09004 * 110.65151 * 241.38197 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3127 6 1 4.0790 -0.0860 -0.5392 7 6 4.2305 -1.1934 -2.3578 8 7 3.5765 -1.8377 -3.2994 9 14 6.0922 -1.0621 -2.4360 10 1 6.5838 -0.2925 -1.2650 11 1 6.6856 -2.4233 -2.4178 12 1 6.4871 -0.3665 -3.6872 13 16 2.1333 -0.8531 1.4779 14 6 1.5438 0.2423 2.7258 15 7 0.8791 1.3204 2.5068 16 6 0.4488 2.1385 3.6187 17 1 0.8788 3.1349 3.5165 18 6 -1.0771 2.2492 3.5990 19 6 0.8931 1.5337 4.9596 20 16 1.7733 0.0173 4.4639 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 1.6054 -0.2617 -2.1370 25 1 1.7517 -1.7715 -1.2055 26 1 4.0609 -2.2444 -4.0348 27 1 -1.5144 1.2526 3.6590 28 1 -1.4092 2.8436 4.4500 29 1 -1.3945 2.7302 2.6738 30 1 1.5608 2.2154 5.4865 31 1 0.0283 1.2906 5.5771 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840203344.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:08 Heat of formation + Delta-G solvation = -13.321565 kcal Electronic energy + Delta-G solvation = -13511.840906 eV Core-core repulsion = 11237.539915 eV Total energy + Delta-G solvation = -2274.300991 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 245.060 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.18303 -36.45045 -34.13797 -33.13091 -29.39474 -28.44161 -25.40080 -25.22772 -22.45935 -21.56360 -19.14504 -18.50989 -17.27441 -16.69690 -16.54055 -16.40095 -15.08043 -14.87444 -14.35363 -14.26890 -13.83569 -13.58726 -13.32660 -13.25868 -13.14262 -12.84630 -12.63453 -12.41013 -12.37636 -12.20495 -11.71214 -11.48716 -11.26198 -11.09160 -10.55859 -10.35626 -9.02012 -8.78429 -8.20334 -6.29322 -0.02775 0.50301 0.76577 1.04637 1.37214 1.40428 1.42060 1.54774 2.42012 3.14892 3.31062 3.73369 3.82760 4.09902 4.21267 4.23351 4.44125 4.49284 4.55142 4.79052 4.90702 4.92848 5.03281 5.19582 5.24189 5.38570 5.49990 5.77290 6.17054 6.29452 6.83005 7.39169 8.91488 Molecular weight = 245.06amu Principal moments of inertia in cm(-1) A = 0.036023 B = 0.006077 C = 0.005590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.094810 B = 4606.383468 C = 5008.007469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.048 4.048 3 H 0.078 0.922 4 C 0.043 3.957 5 C -0.533 4.533 6 H 0.062 0.938 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.956 3.044 10 H -0.264 1.264 11 H -0.278 1.278 12 H -0.278 1.278 13 S -0.014 6.014 14 C 0.168 3.832 15 N -0.535 5.535 16 C 0.060 3.940 17 H 0.115 0.885 18 C -0.129 4.129 19 C -0.098 4.098 20 S -0.202 6.202 21 H 0.056 0.944 22 H 0.075 0.925 23 H 0.065 0.935 24 H 0.018 0.982 25 H 0.005 0.995 26 H 0.264 0.736 27 H 0.049 0.951 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.129 0.871 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.649 7.815 16.049 19.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.178 4.178 3 H 0.097 0.903 4 C 0.004 3.996 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.191 4.191 8 N -0.570 5.570 9 Si 0.781 3.219 10 H -0.188 1.188 11 H -0.204 1.204 12 H -0.203 1.203 13 S 0.218 5.782 14 C -0.239 4.239 15 N -0.257 5.257 16 C -0.056 4.056 17 H 0.133 0.867 18 C -0.187 4.187 19 C -0.249 4.249 20 S 0.024 5.976 21 H 0.075 0.925 22 H 0.094 0.906 23 H 0.084 0.916 24 H 0.036 0.964 25 H 0.023 0.977 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.118 0.882 29 H 0.081 0.919 30 H 0.147 0.853 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.818 6.399 16.004 18.535 hybrid contribution 0.008 1.532 -0.658 1.668 sum -6.810 7.931 15.346 18.568 Atomic orbital electron populations 1.21999 0.92151 1.02237 1.03053 1.23335 0.99100 1.01091 0.94265 0.90317 1.18904 0.95583 0.94575 0.90534 1.21599 0.92797 1.34425 1.08342 0.91999 1.25825 1.03268 0.94760 0.95227 1.70073 1.37456 1.36698 1.12727 0.85516 0.80004 0.78068 0.78265 1.18840 1.20404 1.20328 1.86434 1.67603 1.28425 0.95739 1.29192 0.97518 0.98183 0.98981 1.70692 1.15607 1.06141 1.33268 1.22658 0.99668 0.99026 0.84252 0.86713 1.21850 0.90459 1.02524 1.03913 1.25165 1.04021 0.94579 1.01141 1.86665 1.72353 1.35872 1.02669 0.92529 0.90621 0.91569 0.96374 0.97702 0.92710 0.93175 0.88180 0.91858 0.85284 0.84924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.82 9.00 71.98 0.65 -4.17 16 2 C -0.05 -2.01 2.24 30.59 0.07 -1.94 16 3 H 0.08 3.44 8.13 -2.39 -0.02 3.42 16 4 C 0.04 2.20 4.44 29.85 0.13 2.33 16 5 C -0.53 -29.86 8.53 25.60 0.22 -29.64 16 6 H 0.06 3.42 7.60 -2.91 -0.02 3.40 16 7 C 0.01 0.43 5.46 84.66 0.46 0.89 16 8 N -0.93 -55.68 13.29 21.45 0.28 -55.40 16 9 Si 0.96 44.50 29.54 68.60 2.03 46.53 16 10 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 13 S -0.01 -0.56 21.06 -56.49 -1.19 -1.75 16 14 C 0.17 5.65 7.45 130.73 0.97 6.62 16 15 N -0.54 -16.42 7.75 -327.37 -2.54 -18.96 16 16 C 0.06 1.26 4.05 45.57 0.18 1.44 16 17 H 0.12 2.18 8.14 -2.38 -0.02 2.16 16 18 C -0.13 -2.13 9.20 71.98 0.66 -1.47 16 19 C -0.10 -1.74 7.09 72.21 0.51 -1.22 16 20 S -0.20 -5.61 23.28 -56.49 -1.31 -6.92 16 21 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 22 H 0.08 2.50 5.88 -2.39 -0.01 2.49 16 23 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 24 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 26 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.13 1.72 7.66 -2.38 -0.02 1.70 16 Total: -1.00 -63.52 284.56 2.23 -61.29 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: 1.10 Total: 2.36 kcal Atomic # 6 Polarization: -31.02 SS G_CDS: 3.86 Total: -27.16 kcal Atomic # 7 Polarization: -72.10 SS G_CDS: -2.25 Total: -74.35 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 16 Polarization: -6.16 SS G_CDS: -2.50 Total: -8.67 kcal Total: -63.52 2.23 -61.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840203344.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.971 kcal (2) G-P(sol) polarization free energy of solvation -63.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds