Wall clock time and date at job start Sun Mar 29 2020 22:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46866 * 2 1 4 4 N 1.31805 * 119.04307 * 90.00024 * 3 2 1 5 5 C 1.32643 * 121.01814 * 179.97438 * 4 3 2 6 6 Cl 1.73592 * 120.43291 * 179.97438 * 5 4 3 7 7 C 1.38564 * 119.13210 * 0.02562 * 5 4 3 8 8 F 1.35105 * 120.86589 * 180.02562 * 7 5 4 9 9 C 1.39759 * 118.27395 * 359.97438 * 7 5 4 10 10 N 1.38608 * 120.54664 * 180.02562 * 9 7 5 11 11 C 1.36909 * 120.00043 * 179.97438 * 10 9 7 12 12 H 1.07994 * 120.00106 * 0.02562 * 11 10 9 13 13 C 1.38848 * 119.99921 * 179.97438 * 11 10 9 14 14 N 1.31545 * 119.99905 * 180.02562 * 13 11 10 15 15 Si 1.86804 * 119.99660 * 0.02562 * 13 11 10 16 16 H 1.48495 * 109.47053 * 90.00284 * 15 13 11 17 17 H 1.48503 * 109.46622 * 209.99640 * 15 13 11 18 18 H 1.48493 * 109.47199 * 329.99658 * 15 13 11 19 19 N 1.31709 * 119.04196 * 269.73354 * 3 2 1 20 20 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.46955 * 300.00219 * 1 2 3 22 22 H 1.09000 * 109.47050 * 60.00048 * 1 2 3 23 23 H 1.09000 * 109.47050 * 119.99952 * 2 1 3 24 24 H 1.09001 * 109.46801 * 240.00064 * 2 1 3 25 25 H 0.96998 * 119.99932 * 0.02562 * 10 9 7 26 26 H 0.96993 * 119.99507 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2456 2.0241 1.1523 5 6 2.6879 3.2738 1.1980 6 17 2.9630 4.0539 2.7242 7 6 2.9265 3.9487 0.0116 8 9 3.3777 5.2222 0.0173 9 6 2.6892 3.2776 -1.1911 10 7 2.9125 3.9077 -2.4053 11 6 2.6769 3.2395 -3.5768 12 1 2.3166 2.2217 -3.5549 13 6 2.9001 3.8709 -4.7931 14 7 2.6732 3.2291 -5.9187 15 14 3.5225 5.6318 -4.8310 16 1 5.0075 5.6317 -4.8411 17 1 3.0193 6.3084 -6.0534 18 1 3.0356 6.3549 -3.6289 19 7 2.2505 2.0219 -1.1515 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 3.2365 4.8218 -2.4250 26 1 2.8295 3.6700 -6.7684 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163181964.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:03 Heat of formation + Delta-G solvation = -8.430595 kcal Electronic energy + Delta-G solvation = -15318.560266 eV Core-core repulsion = 12372.674138 eV Total energy + Delta-G solvation = -2945.886128 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 245.043 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.18586 -40.01046 -36.58853 -36.13376 -33.42812 -32.79386 -31.32146 -29.17187 -25.46977 -24.31153 -22.43454 -21.26911 -19.12467 -17.25363 -17.13609 -16.50487 -15.52028 -15.14518 -14.94989 -14.00826 -13.54629 -13.43714 -13.41344 -12.92204 -12.43625 -12.33493 -12.20535 -11.50291 -11.37984 -11.15082 -10.97237 -10.76118 -10.68606 -10.46640 -10.24144 -9.48983 -8.83243 -8.37355 -7.78395 -6.85924 -4.14662 1.50823 1.85326 2.11482 2.83927 2.85878 2.91017 3.69808 3.99851 4.23208 4.64433 4.73874 4.83008 5.27046 5.50928 5.66350 5.72724 5.77942 6.15603 6.22178 6.40821 6.51015 6.78555 7.06563 7.58963 7.71179 8.18466 8.62863 8.77379 9.12648 10.22086 Molecular weight = 245.04amu Principal moments of inertia in cm(-1) A = 0.022230 B = 0.008671 C = 0.006365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.253141 B = 3228.417789 C = 4397.905530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.047 4.047 3 C 0.371 3.629 4 N -0.591 5.591 5 C 0.230 3.770 6 Cl -0.040 7.040 7 C -0.110 4.110 8 F -0.138 7.138 9 C 0.352 3.648 10 N -0.512 5.512 11 C -0.287 4.287 12 H 0.139 0.861 13 C 0.048 3.952 14 N -0.840 5.840 15 Si 0.876 3.124 16 H -0.261 1.261 17 H -0.266 1.266 18 H -0.262 1.262 19 N -0.547 5.547 20 H 0.060 0.940 21 H 0.055 0.945 22 H 0.060 0.940 23 H 0.084 0.916 24 H 0.088 0.912 25 H 0.393 0.607 26 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.624 -0.227 8.361 8.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.086 4.086 3 C 0.100 3.900 4 N -0.320 5.320 5 C 0.062 3.938 6 Cl -0.012 7.012 7 C -0.146 4.146 8 F -0.117 7.117 9 C 0.102 3.898 10 N -0.118 5.118 11 C -0.418 4.418 12 H 0.157 0.843 13 C -0.161 4.161 14 N -0.473 5.473 15 Si 0.700 3.300 16 H -0.186 1.186 17 H -0.190 1.190 18 H -0.187 1.187 19 N -0.275 5.275 20 H 0.079 0.921 21 H 0.074 0.926 22 H 0.079 0.921 23 H 0.103 0.897 24 H 0.107 0.893 25 H 0.230 0.770 26 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.881 -0.986 7.868 7.978 hybrid contribution 0.888 2.541 -0.057 2.693 sum 0.007 1.556 7.811 7.964 Atomic orbital electron populations 1.21659 0.94085 1.01729 1.02462 1.20218 0.96375 0.88484 1.03559 1.22530 0.89588 0.96014 0.81847 1.67469 1.25624 1.08354 1.30534 1.21347 0.96186 0.91041 0.85185 1.98360 1.94168 1.78291 1.30332 1.17881 1.20190 0.83185 0.93299 1.91378 1.87957 1.35349 1.97028 1.17846 0.98184 0.89603 0.84172 1.41225 1.54007 1.13357 1.03200 1.19856 1.40368 1.01138 0.80485 0.84324 1.25197 0.96760 0.99298 0.94890 1.69656 1.42149 1.37597 0.97886 0.86651 0.80543 0.83184 0.79591 1.18601 1.18999 1.18741 1.67789 1.22657 1.07993 1.29085 0.92078 0.92566 0.92137 0.89749 0.89326 0.76965 0.90438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.90 37.16 0.37 -1.55 15 2 C -0.05 -0.72 6.37 -27.88 -0.18 -0.90 15 3 C 0.37 7.35 6.90 -157.26 -1.08 6.26 15 4 N -0.59 -11.84 10.32 -7.88 -0.08 -11.92 15 5 C 0.23 4.62 7.34 -17.08 -0.13 4.49 15 6 Cl -0.04 -0.68 28.88 -51.86 -1.50 -2.17 15 7 C -0.11 -2.34 7.37 -38.89 -0.29 -2.62 15 8 F -0.14 -2.80 16.41 2.25 0.04 -2.76 15 9 C 0.35 8.04 7.47 -154.59 -1.16 6.89 15 10 N -0.51 -11.88 5.22 -10.95 -0.06 -11.93 15 11 C -0.29 -7.26 10.20 -15.06 -0.15 -7.42 15 12 H 0.14 3.84 7.34 -52.49 -0.39 3.45 15 13 C 0.05 1.19 5.50 -17.45 -0.10 1.09 15 14 N -0.84 -21.72 13.96 55.49 0.77 -20.94 15 15 Si 0.88 17.87 27.74 -169.99 -4.71 13.15 15 16 H -0.26 -5.26 7.11 56.52 0.40 -4.85 15 17 H -0.27 -5.33 7.11 56.52 0.40 -4.93 15 18 H -0.26 -5.14 6.52 56.52 0.37 -4.77 15 19 N -0.55 -12.28 9.14 -9.90 -0.09 -12.37 15 20 H 0.06 0.66 8.14 -51.93 -0.42 0.24 15 21 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 22 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 23 H 0.08 1.14 8.14 -51.93 -0.42 0.72 15 24 H 0.09 1.31 8.14 -51.93 -0.42 0.89 15 25 H 0.39 8.52 5.32 -40.82 -0.22 8.30 15 26 H 0.28 6.75 8.31 -40.82 -0.34 6.41 15 LS Contribution 255.11 15.07 3.84 3.84 Total: -1.00 -26.18 255.11 -6.38 -32.56 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -1.88 Total: 6.30 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: -2.71 Total: 6.24 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: 0.55 Total: -57.16 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.04 Total: -2.76 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -4.71 Total: 13.15 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.17 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -26.18 -6.38 -32.56 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181964.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.127 kcal (2) G-P(sol) polarization free energy of solvation -26.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds