Wall clock time and date at job start Sun Mar 29 2020 22:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46866 * 2 1 4 4 N 1.31805 * 119.04307 * 90.00024 * 3 2 1 5 5 C 1.32643 * 121.01814 * 179.97438 * 4 3 2 6 6 Cl 1.73592 * 120.43291 * 179.97438 * 5 4 3 7 7 C 1.38564 * 119.13210 * 0.02562 * 5 4 3 8 8 F 1.35105 * 120.86589 * 180.02562 * 7 5 4 9 9 C 1.39759 * 118.27395 * 359.97438 * 7 5 4 10 10 N 1.38608 * 120.54664 * 180.02562 * 9 7 5 11 11 C 1.36909 * 120.00043 * 179.97438 * 10 9 7 12 12 H 1.07994 * 120.00106 * 0.02562 * 11 10 9 13 13 C 1.38848 * 119.99921 * 179.97438 * 11 10 9 14 14 N 1.31545 * 119.99905 * 180.02562 * 13 11 10 15 15 Si 1.86804 * 119.99660 * 0.02562 * 13 11 10 16 16 H 1.48495 * 109.47053 * 90.00284 * 15 13 11 17 17 H 1.48503 * 109.46622 * 209.99640 * 15 13 11 18 18 H 1.48493 * 109.47199 * 329.99658 * 15 13 11 19 19 N 1.31709 * 119.04196 * 269.73354 * 3 2 1 20 20 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.46955 * 300.00219 * 1 2 3 22 22 H 1.09000 * 109.47050 * 60.00048 * 1 2 3 23 23 H 1.09000 * 109.47050 * 119.99952 * 2 1 3 24 24 H 1.09001 * 109.46801 * 240.00064 * 2 1 3 25 25 H 0.96998 * 119.99932 * 0.02562 * 10 9 7 26 26 H 0.96993 * 119.99507 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2456 2.0241 1.1523 5 6 2.6879 3.2738 1.1980 6 17 2.9630 4.0539 2.7242 7 6 2.9265 3.9487 0.0116 8 9 3.3777 5.2222 0.0173 9 6 2.6892 3.2776 -1.1911 10 7 2.9125 3.9077 -2.4053 11 6 2.6769 3.2395 -3.5768 12 1 2.3166 2.2217 -3.5549 13 6 2.9001 3.8709 -4.7931 14 7 2.6732 3.2291 -5.9187 15 14 3.5225 5.6318 -4.8310 16 1 5.0075 5.6317 -4.8411 17 1 3.0193 6.3084 -6.0534 18 1 3.0356 6.3549 -3.6289 19 7 2.2505 2.0219 -1.1515 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 3.2365 4.8218 -2.4250 26 1 2.8295 3.6700 -6.7684 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163181964.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:03 Heat of formation + Delta-G solvation = -23.469435 kcal Electronic energy + Delta-G solvation = -15319.212399 eV Core-core repulsion = 12372.674138 eV Total energy + Delta-G solvation = -2946.538261 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 245.043 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.84184 -41.70804 -38.23763 -37.73751 -34.91178 -34.49548 -33.03307 -30.76216 -27.26437 -25.75515 -24.15381 -22.78655 -20.88560 -18.94936 -18.84117 -18.17163 -17.19669 -16.77022 -16.63952 -15.51455 -15.14995 -14.97193 -14.77308 -14.60952 -14.11306 -14.04925 -13.57388 -13.00861 -12.85371 -12.61002 -12.53544 -12.25133 -12.12464 -11.88891 -11.83227 -11.23020 -10.52785 -10.08289 -9.52355 -8.66806 -6.06631 -0.15792 0.14965 0.53106 1.22789 1.27715 1.30290 2.02419 2.29501 2.54349 2.99529 3.02172 3.18182 3.61706 3.91338 4.35162 4.44317 4.47625 4.74722 5.07223 5.11503 5.18532 5.32928 5.43377 5.80365 5.95806 6.33141 6.86129 6.91545 7.41741 8.45681 Molecular weight = 245.04amu Principal moments of inertia in cm(-1) A = 0.022230 B = 0.008671 C = 0.006365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.253141 B = 3228.417789 C = 4397.905530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.048 4.048 3 C 0.367 3.633 4 N -0.581 5.581 5 C 0.228 3.772 6 Cl -0.004 7.004 7 C -0.119 4.119 8 F -0.131 7.131 9 C 0.356 3.644 10 N -0.525 5.525 11 C -0.307 4.307 12 H 0.101 0.899 13 C 0.006 3.994 14 N -0.890 5.890 15 Si 0.940 3.060 16 H -0.254 1.254 17 H -0.259 1.259 18 H -0.249 1.249 19 N -0.574 5.574 20 H 0.094 0.906 21 H 0.055 0.945 22 H 0.039 0.961 23 H 0.109 0.891 24 H 0.091 0.909 25 H 0.400 0.600 26 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.498 0.226 10.473 10.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.087 4.087 3 C 0.097 3.903 4 N -0.308 5.308 5 C 0.060 3.940 6 Cl 0.025 6.975 7 C -0.154 4.154 8 F -0.110 7.110 9 C 0.106 3.894 10 N -0.135 5.135 11 C -0.437 4.437 12 H 0.119 0.881 13 C -0.199 4.199 14 N -0.525 5.525 15 Si 0.760 3.240 16 H -0.178 1.178 17 H -0.184 1.184 18 H -0.174 1.174 19 N -0.302 5.302 20 H 0.113 0.887 21 H 0.074 0.926 22 H 0.058 0.942 23 H 0.128 0.872 24 H 0.110 0.890 25 H 0.238 0.762 26 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.764 -0.557 10.024 10.068 hybrid contribution 0.806 2.268 -0.347 2.432 sum 0.042 1.711 9.677 9.827 Atomic orbital electron populations 1.21627 0.92585 1.03657 1.01358 1.20458 0.97486 0.85805 1.04932 1.23479 0.88133 0.97543 0.81099 1.67683 1.24498 1.08195 1.30467 1.21675 0.94925 0.90994 0.86452 1.98375 1.93804 1.77621 1.27722 1.17900 1.20643 0.83648 0.93205 1.91393 1.87900 1.34756 1.96985 1.18296 0.96364 0.89910 0.84786 1.41035 1.56129 1.13685 1.02622 1.19461 1.42210 1.00187 0.81879 0.88131 1.25888 0.96604 1.03392 0.93999 1.69754 1.44557 1.39640 0.98584 0.85684 0.80177 0.77984 0.80130 1.17846 1.18351 1.17384 1.67918 1.23377 1.08275 1.30667 0.88704 0.92600 0.94215 0.87237 0.89032 0.76225 0.90079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 9.90 71.98 0.71 -2.65 15 2 C -0.05 -1.36 6.37 29.85 0.19 -1.17 15 3 C 0.37 14.04 6.90 138.77 0.96 15.00 15 4 N -0.58 -21.95 10.32 -178.86 -1.85 -23.80 15 5 C 0.23 8.66 7.34 84.65 0.62 9.28 15 6 Cl 0.00 -0.12 28.88 -2.72 -0.08 -0.20 15 7 C -0.12 -4.88 7.37 22.72 0.17 -4.72 15 8 F -0.13 -5.07 16.41 44.97 0.74 -4.33 15 9 C 0.36 16.23 7.47 133.15 0.99 17.22 15 10 N -0.52 -24.60 5.22 -188.54 -0.98 -25.58 15 11 C -0.31 -16.09 10.20 84.05 0.86 -15.24 15 12 H 0.10 5.92 7.34 -2.91 -0.02 5.90 15 13 C 0.01 0.31 5.50 84.88 0.47 0.78 15 14 N -0.89 -47.81 13.96 21.65 0.30 -47.51 15 15 Si 0.94 36.88 27.74 68.60 1.90 38.78 15 16 H -0.25 -9.61 7.11 99.48 0.71 -8.91 15 17 H -0.26 -9.82 7.11 99.48 0.71 -9.12 15 18 H -0.25 -9.13 6.52 99.48 0.65 -8.48 15 19 N -0.57 -25.81 9.14 -185.24 -1.69 -27.50 15 20 H 0.09 1.76 8.14 -2.39 -0.02 1.74 15 21 H 0.05 1.40 8.14 -2.39 -0.02 1.38 15 22 H 0.04 1.15 8.14 -2.39 -0.02 1.13 15 23 H 0.11 2.60 8.14 -2.39 -0.02 2.58 15 24 H 0.09 2.59 8.14 -2.39 -0.02 2.57 15 25 H 0.40 17.13 5.32 -92.71 -0.49 16.63 15 26 H 0.29 14.16 8.31 -92.71 -0.77 13.39 15 Total: -1.00 -56.80 255.11 3.99 -52.81 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 0.68 Total: 18.81 kcal Atomic # 6 Polarization: 13.54 SS G_CDS: 4.97 Total: 18.51 kcal Atomic # 7 Polarization: -120.17 SS G_CDS: -4.22 Total: -124.39 kcal Atomic # 9 Polarization: -5.07 SS G_CDS: 0.74 Total: -4.33 kcal Atomic # 14 Polarization: 36.88 SS G_CDS: 1.90 Total: 38.78 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -0.08 Total: -0.20 kcal Total: -56.80 3.99 -52.81 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181964.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.343 kcal (2) G-P(sol) polarization free energy of solvation -56.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds