Wall clock time and date at job start Sun Mar 29 2020 22:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00025 * 2 1 4 4 H 1.48499 * 109.47051 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47427 * 300.00338 * 3 2 1 6 6 H 1.48507 * 109.46724 * 60.00071 * 3 2 1 7 7 C 1.37878 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99822 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00017 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47116 * 180.02562 * 9 7 2 11 11 C 1.52991 * 109.47174 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47478 * 180.02562 * 11 10 9 13 13 O 1.42903 * 109.47588 * 180.02562 * 12 11 10 14 14 C 1.42896 * 114.00107 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.47107 * 179.97438 * 14 13 12 16 16 H 1.08996 * 109.57437 * 305.16401 * 15 14 13 17 17 C 1.53146 * 109.52474 * 184.99717 * 15 14 13 18 18 O 1.43070 * 109.15244 * 184.78483 * 17 15 14 19 19 C 1.43076 * 113.59290 * 57.94855 * 18 17 15 20 20 C 1.53136 * 109.15675 * 302.05511 * 19 18 17 21 21 O 1.43073 * 109.52452 * 65.32594 * 15 14 13 22 22 H 0.96993 * 119.99576 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.46915 * 60.00425 * 9 7 2 24 24 H 1.08998 * 109.46767 * 300.00075 * 9 7 2 25 25 H 1.09005 * 109.46820 * 59.99813 * 10 9 7 26 26 H 1.08999 * 109.46732 * 300.00430 * 10 9 7 27 27 H 1.09000 * 109.46979 * 59.99589 * 11 10 9 28 28 H 1.09006 * 109.47074 * 300.00068 * 11 10 9 29 29 H 1.09000 * 109.47472 * 59.99743 * 12 11 10 30 30 H 1.09006 * 109.46903 * 300.00025 * 12 11 10 31 31 H 1.09000 * 109.47116 * 59.99500 * 14 13 12 32 32 H 1.09008 * 109.47155 * 300.00145 * 14 13 12 33 33 H 1.08996 * 109.52465 * 304.69041 * 17 15 14 34 34 H 1.09002 * 109.52103 * 64.81577 * 17 15 14 35 35 H 1.09004 * 109.51796 * 61.95377 * 19 18 17 36 36 H 1.08994 * 109.52613 * 182.14538 * 19 18 17 37 37 H 1.08995 * 109.53234 * 175.21112 * 20 19 18 38 38 H 1.09009 * 109.52197 * 295.33851 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 0.0001 12 6 2.4746 -6.1500 0.0008 13 8 1.7602 -7.3876 0.0008 14 6 2.6001 -8.5436 0.0008 15 6 1.7329 -9.8041 0.0014 16 1 1.0390 -9.7695 0.8412 17 6 2.6275 -11.0408 0.1271 18 8 1.8208 -12.2170 0.0148 19 6 1.0855 -12.2922 -1.2103 20 6 0.1910 -11.0556 -1.3361 21 8 0.9977 -9.8793 -1.2237 22 1 -0.4849 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6248 -2.5570 0.8897 25 1 2.8721 -3.6043 0.8895 26 1 2.8721 -3.6043 -0.8905 27 1 0.8535 -5.0450 -0.8896 28 1 0.8541 -5.0446 0.8904 29 1 3.1013 -6.0918 0.8907 30 1 3.1014 -6.0927 -0.8893 31 1 3.2295 -8.5355 0.8907 32 1 3.2295 -8.5355 -0.8893 33 1 3.3733 -11.0332 -0.6677 34 1 3.1273 -11.0318 1.0958 35 1 1.7795 -12.3267 -2.0501 36 1 0.4677 -13.1902 -1.2098 37 1 -0.3080 -11.0639 -2.3051 38 1 -0.5556 -11.0637 -0.5419 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224690709.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:15 Heat of formation + Delta-G solvation = -159.747753 kcal Electronic energy + Delta-G solvation = -17273.073642 eV Core-core repulsion = 14308.176399 eV Total energy + Delta-G solvation = -2964.897243 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 244.151 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.24356 -37.91423 -36.25126 -34.63523 -32.79119 -32.03510 -29.21402 -28.41794 -26.07338 -24.55490 -23.31660 -21.79665 -21.26635 -20.00572 -17.34450 -17.01078 -16.73723 -16.20906 -16.02768 -15.68954 -15.54623 -15.22208 -14.42947 -14.03678 -13.70498 -13.63892 -12.78603 -12.42623 -12.37123 -12.08882 -11.75414 -11.56699 -11.14938 -11.08891 -10.97868 -10.71767 -10.61696 -10.47114 -10.37951 -9.65495 -9.48986 -9.46855 -9.27932 -9.00448 -8.31765 -5.96551 -3.98881 3.27456 3.32892 3.35397 3.40061 3.44243 3.61312 4.33576 4.48720 4.61871 4.66467 4.75312 4.82365 4.96240 5.07806 5.14149 5.18428 5.34713 5.38670 5.41071 5.49178 5.52848 5.61164 5.79308 6.14201 6.17319 6.50878 6.56414 6.79268 6.81887 6.95452 7.12424 7.36287 7.72620 7.87679 8.04504 8.46619 9.08776 9.64934 11.14916 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.073587 B = 0.002877 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.409709 B = 9730.350114 C = 9971.329267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.107 4.107 11 C -0.116 4.116 12 C 0.063 3.937 13 O -0.381 6.381 14 C 0.071 3.929 15 C 0.056 3.944 16 H 0.078 0.922 17 C 0.033 3.967 18 O -0.378 6.378 19 C 0.022 3.978 20 C 0.023 3.977 21 O -0.364 6.364 22 H 0.260 0.740 23 H 0.017 0.983 24 H 0.016 0.984 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.108 0.892 35 H 0.061 0.939 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.329 -24.384 -1.026 24.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.145 4.145 11 C -0.154 4.154 12 C -0.013 4.013 13 O -0.300 6.300 14 C -0.006 4.006 15 C -0.002 4.002 16 H 0.096 0.904 17 C -0.044 4.044 18 O -0.296 6.296 19 C -0.055 4.055 20 C -0.054 4.054 21 O -0.283 6.283 22 H 0.069 0.931 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.126 0.874 35 H 0.080 0.920 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.985 -24.271 -1.027 24.617 hybrid contribution 0.661 0.952 -0.044 1.160 sum 4.646 -23.318 -1.071 23.801 Atomic orbital electron populations 1.69982 1.06054 1.26434 1.51041 1.25043 0.94854 0.99269 0.95429 0.86544 0.80088 0.83850 0.77557 1.19771 1.21022 1.21034 1.21314 0.93054 0.91144 1.50295 0.92672 1.19099 0.94016 0.91192 0.97356 1.21576 0.99179 0.93465 1.00279 1.21633 0.98095 0.92831 1.02827 1.22719 0.95462 0.83468 0.99674 1.87957 1.33355 1.13305 1.95371 1.22306 0.92418 0.84949 1.00941 1.22775 0.94523 0.94134 0.88758 0.90449 1.23160 0.92909 0.84678 1.03677 1.88097 1.61450 1.41212 1.38883 1.23307 0.95440 0.99350 0.87412 1.23253 0.93399 0.85206 1.03551 1.88214 1.61047 1.41232 1.37823 0.93079 0.96498 0.96530 0.93355 0.93324 0.91614 0.91717 0.93604 0.93542 0.91717 0.92518 0.91826 0.87414 0.92046 0.87701 0.87636 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.50 13.29 55.43 0.74 -26.76 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.96 29.54 -169.99 -5.02 16.93 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 11 C -0.12 -2.13 5.58 -26.74 -0.15 -2.28 16 12 C 0.06 0.96 5.94 37.15 0.22 1.18 16 13 O -0.38 -5.90 10.31 -39.55 -0.41 -6.31 16 14 C 0.07 0.81 5.61 37.16 0.21 1.02 16 15 C 0.06 0.61 3.13 -26.65 -0.08 0.53 16 16 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 17 C 0.03 0.28 6.34 37.23 0.24 0.52 16 18 O -0.38 -3.72 10.85 -48.80 -0.53 -4.25 16 19 C 0.02 0.17 7.05 37.23 0.26 0.43 16 20 C 0.02 0.20 7.05 37.23 0.26 0.47 16 21 O -0.36 -4.57 10.46 -55.33 -0.58 -5.15 16 22 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 23 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 LS Contribution 315.62 15.07 4.76 4.76 Total: -1.00 -33.11 315.62 -7.50 -40.62 By element: Atomic # 1 Polarization: 0.87 SS G_CDS: -6.73 Total: -5.85 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: 0.27 Total: -13.99 kcal Atomic # 7 Polarization: -27.50 SS G_CDS: 0.74 Total: -26.76 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -1.52 Total: -15.71 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.11 -7.50 -40.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224690709.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.130 kcal (2) G-P(sol) polarization free energy of solvation -33.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds