Wall clock time and date at job start Sun Mar 29 2020 22:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00025 * 2 1 4 4 H 1.48499 * 109.47051 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47427 * 300.00338 * 3 2 1 6 6 H 1.48507 * 109.46724 * 60.00071 * 3 2 1 7 7 C 1.37878 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99822 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00017 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47116 * 180.02562 * 9 7 2 11 11 C 1.52991 * 109.47174 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47478 * 180.02562 * 11 10 9 13 13 O 1.42903 * 109.47588 * 180.02562 * 12 11 10 14 14 C 1.42896 * 114.00107 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.47107 * 179.97438 * 14 13 12 16 16 H 1.08996 * 109.57437 * 305.16401 * 15 14 13 17 17 C 1.53146 * 109.52474 * 184.99717 * 15 14 13 18 18 O 1.43070 * 109.15244 * 184.78483 * 17 15 14 19 19 C 1.43076 * 113.59290 * 57.94855 * 18 17 15 20 20 C 1.53136 * 109.15675 * 302.05511 * 19 18 17 21 21 O 1.43073 * 109.52452 * 65.32594 * 15 14 13 22 22 H 0.96993 * 119.99576 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.46915 * 60.00425 * 9 7 2 24 24 H 1.08998 * 109.46767 * 300.00075 * 9 7 2 25 25 H 1.09005 * 109.46820 * 59.99813 * 10 9 7 26 26 H 1.08999 * 109.46732 * 300.00430 * 10 9 7 27 27 H 1.09000 * 109.46979 * 59.99589 * 11 10 9 28 28 H 1.09006 * 109.47074 * 300.00068 * 11 10 9 29 29 H 1.09000 * 109.47472 * 59.99743 * 12 11 10 30 30 H 1.09006 * 109.46903 * 300.00025 * 12 11 10 31 31 H 1.09000 * 109.47116 * 59.99500 * 14 13 12 32 32 H 1.09008 * 109.47155 * 300.00145 * 14 13 12 33 33 H 1.08996 * 109.52465 * 304.69041 * 17 15 14 34 34 H 1.09002 * 109.52103 * 64.81577 * 17 15 14 35 35 H 1.09004 * 109.51796 * 61.95377 * 19 18 17 36 36 H 1.08994 * 109.52613 * 182.14538 * 19 18 17 37 37 H 1.08995 * 109.53234 * 175.21112 * 20 19 18 38 38 H 1.09009 * 109.52197 * 295.33851 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 0.0001 12 6 2.4746 -6.1500 0.0008 13 8 1.7602 -7.3876 0.0008 14 6 2.6001 -8.5436 0.0008 15 6 1.7329 -9.8041 0.0014 16 1 1.0390 -9.7695 0.8412 17 6 2.6275 -11.0408 0.1271 18 8 1.8208 -12.2170 0.0148 19 6 1.0855 -12.2922 -1.2103 20 6 0.1910 -11.0556 -1.3361 21 8 0.9977 -9.8793 -1.2237 22 1 -0.4849 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6248 -2.5570 0.8897 25 1 2.8721 -3.6043 0.8895 26 1 2.8721 -3.6043 -0.8905 27 1 0.8535 -5.0450 -0.8896 28 1 0.8541 -5.0446 0.8904 29 1 3.1013 -6.0918 0.8907 30 1 3.1014 -6.0927 -0.8893 31 1 3.2295 -8.5355 0.8907 32 1 3.2295 -8.5355 -0.8893 33 1 3.3733 -11.0332 -0.6677 34 1 3.1273 -11.0318 1.0958 35 1 1.7795 -12.3267 -2.0501 36 1 0.4677 -13.1902 -1.2098 37 1 -0.3080 -11.0639 -2.3051 38 1 -0.5556 -11.0637 -0.5419 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224690709.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:15 Heat of formation + Delta-G solvation = -181.826561 kcal Electronic energy + Delta-G solvation = -17274.031051 eV Core-core repulsion = 14308.176399 eV Total energy + Delta-G solvation = -2965.854652 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 244.151 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.98367 -39.01036 -37.05917 -36.38946 -34.43942 -33.23592 -30.61587 -29.54028 -27.12825 -26.15785 -24.09434 -23.39728 -22.15249 -21.69149 -18.45087 -18.16674 -17.78960 -17.57388 -16.96931 -16.70807 -16.53720 -16.30966 -16.04560 -15.43659 -14.84007 -14.47989 -14.31222 -13.81905 -13.75753 -13.32454 -12.93765 -12.88755 -12.68506 -12.39965 -12.31486 -12.29772 -11.97213 -11.71486 -11.45623 -11.37540 -11.31173 -11.07335 -10.58159 -10.55378 -10.20141 -8.20037 -6.31796 1.40313 1.40988 1.54549 2.39996 2.49738 2.61834 2.81144 3.12943 3.63870 3.87331 3.93125 4.03157 4.06778 4.12858 4.23728 4.32374 4.40147 4.44528 4.46766 4.55292 4.61740 4.64472 4.71540 4.85083 4.86464 4.87350 5.16401 5.25194 5.28942 5.53415 5.75255 5.85804 5.93402 6.03024 6.24027 6.28218 6.86097 7.37751 8.92418 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.073587 B = 0.002877 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.409709 B = 9730.350114 C = 9971.329267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.969 3.031 4 H -0.259 1.259 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.021 3.979 10 C -0.093 4.093 11 C -0.111 4.111 12 C 0.072 3.928 13 O -0.408 6.408 14 C 0.065 3.935 15 C 0.053 3.947 16 H 0.065 0.935 17 C 0.037 3.963 18 O -0.395 6.395 19 C 0.022 3.978 20 C 0.016 3.984 21 O -0.396 6.396 22 H 0.264 0.736 23 H -0.012 1.012 24 H -0.010 1.010 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.128 0.872 35 H 0.068 0.932 36 H 0.127 0.873 37 H 0.121 0.879 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.269 -25.042 -0.955 25.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.793 3.207 4 H -0.183 1.183 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.581 4.581 8 H 0.082 0.918 9 C -0.016 4.016 10 C -0.131 4.131 11 C -0.149 4.149 12 C -0.004 4.004 13 O -0.328 6.328 14 C -0.011 4.011 15 C -0.005 4.005 16 H 0.083 0.917 17 C -0.040 4.040 18 O -0.314 6.314 19 C -0.054 4.054 20 C -0.060 4.060 21 O -0.316 6.316 22 H 0.072 0.928 23 H 0.007 0.993 24 H 0.008 0.992 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.146 0.854 35 H 0.086 0.914 36 H 0.145 0.855 37 H 0.139 0.861 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.934 -24.954 -0.957 25.668 hybrid contribution -0.018 1.103 -0.082 1.106 sum 5.916 -23.851 -1.039 24.596 Atomic orbital electron populations 1.70123 1.07962 1.27745 1.51841 1.26064 0.95809 1.03642 0.94741 0.85341 0.79111 0.78463 0.77768 1.18319 1.20388 1.20345 1.21765 0.93688 0.92297 1.50318 0.91833 1.19038 0.94565 0.93356 0.94690 1.21351 0.97996 0.92603 1.01158 1.21463 0.98405 0.93222 1.01764 1.22515 0.94256 0.82489 1.01174 1.87903 1.35002 1.14256 1.95646 1.22579 0.92416 0.83523 1.02592 1.22862 0.94661 0.95071 0.87863 0.91679 1.23220 0.92357 0.83160 1.05225 1.88074 1.61814 1.41549 1.39919 1.23435 0.95502 0.99505 0.86976 1.23459 0.93386 0.84854 1.04296 1.88159 1.61786 1.43035 1.38586 0.92773 0.99325 0.99178 0.92212 0.92480 0.93005 0.92594 0.91633 0.92419 0.88961 0.91802 0.90878 0.85375 0.91375 0.85467 0.86142 0.92418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.52 13.29 21.45 0.28 -58.24 16 2 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 3 Si 0.97 44.85 29.54 68.60 2.03 46.88 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.54 -31.61 9.11 25.60 0.23 -31.37 16 8 H 0.06 3.51 7.74 -2.91 -0.02 3.48 16 9 C 0.02 1.13 4.97 29.85 0.15 1.28 16 10 C -0.09 -3.91 5.15 30.59 0.16 -3.75 16 11 C -0.11 -4.06 5.58 30.59 0.17 -3.89 16 12 C 0.07 2.07 5.94 71.98 0.43 2.50 16 13 O -0.41 -12.25 10.31 -144.85 -1.49 -13.74 16 14 C 0.07 1.37 5.61 71.98 0.40 1.78 16 15 C 0.05 1.11 3.13 30.64 0.10 1.20 16 16 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 17 C 0.04 0.57 6.34 72.03 0.46 1.02 16 18 O -0.39 -7.10 10.85 -136.01 -1.48 -8.57 16 19 C 0.02 0.31 7.05 72.03 0.51 0.81 16 20 C 0.02 0.28 7.05 72.03 0.51 0.79 16 21 O -0.40 -9.75 10.46 -129.76 -1.36 -11.11 16 22 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 23 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 24 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 25 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 26 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 29 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 Total: -1.00 -71.68 315.62 2.55 -69.13 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: 1.00 Total: 5.13 kcal Atomic # 6 Polarization: -33.05 SS G_CDS: 3.57 Total: -29.48 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: 0.28 Total: -58.24 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -4.33 Total: -33.43 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -71.68 2.55 -69.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224690709.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.697 kcal (2) G-P(sol) polarization free energy of solvation -71.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds