Wall clock time and date at job start Sun Mar 29 2020 23:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35925 * 117.00228 * 2 1 4 4 C 1.38573 * 120.08733 * 0.02562 * 3 2 1 5 5 C 1.38227 * 120.02157 * 179.97438 * 4 3 2 6 6 C 1.38349 * 120.20825 * 0.02877 * 5 4 3 7 7 C 1.38116 * 120.18759 * 359.97438 * 6 5 4 8 8 C 1.38882 * 119.97221 * 359.68671 * 7 6 5 9 9 N 1.39771 * 120.10444 * 180.31972 * 8 7 6 10 10 C 1.36832 * 120.00059 * 270.29834 * 9 8 7 11 11 H 1.07995 * 120.00038 * 180.02562 * 10 9 8 12 12 C 1.38936 * 119.99569 * 359.97438 * 10 9 8 13 13 N 1.31388 * 120.00466 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99631 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47134 * 60.00365 * 14 12 10 16 16 H 1.48503 * 109.47062 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47106 * 300.00474 * 14 12 10 18 18 C 1.36393 * 120.00263 * 90.29345 * 9 8 7 19 19 N 1.30980 * 120.00342 * 179.97438 * 18 9 8 20 20 C 1.35500 * 120.00078 * 179.97438 * 19 18 9 21 21 N 6.20855 * 136.89595 * 127.51573 * 2 1 3 22 22 H 1.09002 * 109.47220 * 299.99824 * 1 2 3 23 23 H 1.08996 * 109.47672 * 59.99767 * 1 2 3 24 24 H 1.09006 * 109.47331 * 179.97438 * 1 2 3 25 25 H 1.07992 * 119.99321 * 359.97438 * 4 3 2 26 26 H 1.08000 * 119.89588 * 180.02562 * 5 4 3 27 27 H 1.07997 * 119.90399 * 179.97438 * 6 5 4 28 28 H 1.08003 * 120.01180 * 179.97438 * 7 6 5 29 29 H 0.96995 * 120.00424 * 180.02562 * 13 12 10 30 30 H 1.08004 * 119.99570 * 0.02562 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2931 2.3744 0.0005 5 6 1.9221 3.6053 0.0011 6 6 3.3036 3.6811 0.0005 7 6 4.0624 2.5271 -0.0001 8 6 3.4384 1.2863 0.0064 9 7 4.2037 0.1168 0.0126 10 6 4.5834 -0.4586 -1.1694 11 1 5.1743 -1.3626 -1.1646 12 6 4.2078 0.1195 -2.3756 13 7 3.4884 1.2189 -2.3814 14 14 4.7255 -0.6664 -3.9892 15 1 4.1786 -2.0448 -4.0664 16 1 4.2022 0.1384 -5.1222 17 1 6.2079 -0.7172 -4.0618 18 6 4.5720 -0.4510 1.1968 19 7 5.2887 -1.5473 1.2025 20 6 5.6551 -2.1110 2.3790 21 7 5.9619 -2.5836 3.3651 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 0.2146 2.3195 0.0005 26 1 1.3334 4.5107 0.0019 27 1 3.7899 4.6453 0.0005 28 1 5.1406 2.5895 -0.0010 29 1 3.2258 1.6224 -3.2235 30 1 4.2720 0.0030 2.1297 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005073818.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:42:29 Heat of formation + Delta-G solvation = 55.433629 kcal Electronic energy + Delta-G solvation = -17361.154101 eV Core-core repulsion = 14543.930488 eV Total energy + Delta-G solvation = -2817.223613 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.26940 -39.20680 -37.83490 -37.00485 -34.79355 -33.37577 -30.94749 -30.42430 -27.98524 -27.28834 -24.38399 -22.81919 -22.33856 -20.50160 -18.84291 -18.04175 -17.60639 -16.96915 -16.66165 -16.34227 -15.75686 -15.37025 -15.10451 -14.86699 -14.48646 -14.33646 -13.76228 -13.36436 -13.25212 -13.18919 -12.87816 -12.66802 -12.53982 -12.11095 -12.08362 -11.79043 -11.67432 -10.93939 -10.03626 -9.70496 -9.41510 -8.98124 -8.02438 -5.92059 0.64830 0.74210 0.89323 1.46323 1.53348 1.54768 2.04420 2.28571 2.59728 2.71655 2.92555 3.10800 3.29679 3.66474 4.15915 4.18894 4.30451 4.41784 4.46121 4.61688 4.74564 4.77581 4.96440 5.15136 5.44192 5.57438 5.67500 5.78244 5.86038 6.12642 6.22573 6.67210 6.80980 7.17352 7.36915 8.07070 8.53883 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.014389 B = 0.011372 C = 0.008355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.518548 B = 2461.634418 C = 3350.542880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.338 6.338 3 C 0.132 3.868 4 C -0.206 4.206 5 C -0.087 4.087 6 C -0.148 4.148 7 C -0.074 4.074 8 C 0.151 3.849 9 N -0.328 5.328 10 C -0.324 4.324 11 H 0.107 0.893 12 C 0.012 3.988 13 N -0.844 5.844 14 Si 0.990 3.010 15 H -0.275 1.275 16 H -0.273 1.273 17 H -0.270 1.270 18 C 0.342 3.658 19 N -0.611 5.611 20 C 0.401 3.599 21 N -0.564 5.564 22 H 0.069 0.931 23 H 0.056 0.944 24 H 0.104 0.896 25 H 0.143 0.857 26 H 0.150 0.850 27 H 0.141 0.859 28 H 0.110 0.890 29 H 0.276 0.724 30 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.076 9.433 -1.720 13.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.252 6.252 3 C 0.085 3.915 4 C -0.225 4.225 5 C -0.105 4.105 6 C -0.167 4.167 7 C -0.093 4.093 8 C 0.060 3.940 9 N -0.012 5.012 10 C -0.453 4.453 11 H 0.125 0.875 12 C -0.196 4.196 13 N -0.477 5.477 14 Si 0.813 3.187 15 H -0.201 1.201 16 H -0.198 1.198 17 H -0.195 1.195 18 C 0.056 3.944 19 N -0.364 5.364 20 C -0.002 4.002 21 N -0.267 5.267 22 H 0.088 0.912 23 H 0.075 0.925 24 H 0.122 0.878 25 H 0.161 0.839 26 H 0.168 0.832 27 H 0.159 0.841 28 H 0.128 0.872 29 H 0.087 0.913 30 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.467 8.410 -1.225 11.997 hybrid contribution -0.175 -0.024 -0.840 0.859 sum -8.642 8.386 -2.065 12.218 Atomic orbital electron populations 1.23184 0.77450 1.04502 1.01817 1.86138 1.22662 1.27663 1.88731 1.19144 0.90960 0.84950 0.96400 1.21172 1.00106 0.91694 1.09524 1.21094 0.94435 0.97173 0.97798 1.20955 0.94190 0.97436 1.04099 1.20850 0.99229 0.91059 0.98207 1.16812 0.87094 0.85588 1.04521 1.39835 1.38773 1.18688 1.03860 1.20191 1.32726 1.10412 0.82018 0.87537 1.26056 0.95321 0.96093 1.02115 1.70075 1.31995 1.17262 1.28323 0.85024 0.78802 0.78132 0.76701 1.20052 1.19757 1.19518 1.22547 0.92714 0.90558 0.88552 1.67911 1.35947 1.19615 1.12976 1.26332 0.92469 0.93902 0.87505 1.81500 1.19717 1.17663 1.07805 0.91240 0.92531 0.87780 0.83944 0.83233 0.84081 0.87213 0.91310 0.85057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 9.81 113.37 1.11 1.77 16 2 O -0.34 -13.12 10.24 -92.70 -0.95 -14.07 16 3 C 0.13 5.02 5.80 22.64 0.13 5.15 16 4 C -0.21 -6.20 9.03 22.35 0.20 -6.00 16 5 C -0.09 -2.33 10.04 22.29 0.22 -2.10 16 6 C -0.15 -4.36 10.04 22.27 0.22 -4.13 16 7 C -0.07 -2.71 9.04 22.39 0.20 -2.51 16 8 C 0.15 6.25 2.83 38.32 0.11 6.36 16 9 N -0.33 -15.16 2.44 -346.00 -0.85 -16.00 16 10 C -0.32 -16.10 9.55 84.08 0.80 -15.30 16 11 H 0.11 5.62 7.06 -2.91 -0.02 5.60 16 12 C 0.01 0.57 5.45 84.93 0.46 1.03 16 13 N -0.84 -38.28 9.30 21.66 0.20 -38.08 16 14 Si 0.99 38.63 29.55 68.60 2.03 40.66 16 15 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 16 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 17 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 18 C 0.34 15.30 10.74 179.69 1.93 17.23 16 19 N -0.61 -29.68 9.24 -97.30 -0.90 -30.58 16 20 C 0.40 19.29 16.49 184.40 3.04 22.33 16 21 N -0.56 -27.39 18.54 17.21 0.32 -27.07 16 22 H 0.07 1.47 7.66 -2.39 -0.02 1.45 16 23 H 0.06 1.37 7.66 -2.39 -0.02 1.35 16 24 H 0.10 2.37 8.14 -2.38 -0.02 2.35 16 25 H 0.14 3.42 6.30 -2.91 -0.02 3.40 16 26 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 27 H 0.14 3.27 8.06 -2.91 -0.02 3.24 16 28 H 0.11 4.08 8.06 -2.91 -0.02 4.06 16 29 H 0.28 12.03 8.31 -92.71 -0.77 11.26 16 30 H 0.13 5.14 8.02 -2.91 -0.02 5.12 16 Total: -1.00 -59.67 276.77 9.46 -50.21 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 1.16 Total: 11.12 kcal Atomic # 6 Polarization: 15.37 SS G_CDS: 8.44 Total: 23.81 kcal Atomic # 7 Polarization: -110.51 SS G_CDS: -1.22 Total: -111.73 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -0.95 Total: -14.07 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.66 kcal Total: -59.67 9.46 -50.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005073818.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.647 kcal (2) G-P(sol) polarization free energy of solvation -59.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds