Wall clock time and date at job start Sun Mar 29 2020 22:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86809 * 120.00309 * 2 1 4 4 H 1.48499 * 109.46886 * 269.99513 * 3 2 1 5 5 H 1.48494 * 109.46898 * 29.99807 * 3 2 1 6 6 H 1.48506 * 109.46994 * 150.00008 * 3 2 1 7 7 C 1.38801 * 119.99816 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99875 * 180.02562 * 7 2 1 9 9 S 1.76196 * 119.99909 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00140 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47451 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00064 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00193 * 180.02562 * 11 10 9 14 14 C 1.46928 * 120.63179 * 0.02562 * 13 11 10 15 15 C 1.53159 * 108.76987 * 233.59029 * 14 13 11 16 16 C 1.53046 * 109.32667 * 305.35456 * 15 14 13 17 17 C 1.53039 * 109.52798 * 61.37318 * 16 15 14 18 18 H 1.08997 * 109.49901 * 58.58690 * 17 16 15 19 19 O 1.42895 * 109.50168 * 178.65711 * 17 16 15 20 20 C 1.46931 * 120.63029 * 179.97438 * 13 11 10 21 21 H 0.97006 * 119.99689 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47344 * 59.99424 * 10 9 7 23 23 H 1.09004 * 109.46932 * 299.99694 * 10 9 7 24 24 H 1.08999 * 109.58766 * 353.37877 * 14 13 11 25 25 H 1.08998 * 109.58326 * 113.79952 * 14 13 11 26 26 H 1.08996 * 109.48005 * 185.40991 * 15 14 13 27 27 H 1.08994 * 109.50349 * 65.31594 * 15 14 13 28 28 H 1.09002 * 109.46115 * 301.35771 * 16 15 14 29 29 H 1.09004 * 109.45806 * 181.38656 * 16 15 14 30 30 H 0.96694 * 114.00537 * 179.97438 * 19 17 16 31 31 H 1.08998 * 109.58425 * 6.63242 * 20 13 11 32 32 H 1.08999 * 109.58795 * 246.19692 * 20 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 2.4980 2.0463 -1.4001 5 1 1.4479 2.6527 0.7000 6 1 3.5480 1.4401 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1292 -2.7279 0.0005 10 6 2.5156 -3.8915 0.0005 11 6 1.9871 -5.3027 -0.0001 12 8 0.7908 -5.5023 0.0000 13 7 2.8438 -6.3431 0.0003 14 6 4.2956 -6.1174 0.0019 15 6 4.9161 -6.8917 -1.1648 16 6 4.5090 -8.3639 -1.0692 17 6 2.9863 -8.4811 -1.1674 18 1 2.6483 -8.0507 -2.1100 19 8 2.6091 -9.8582 -1.1094 20 6 2.3437 -7.7247 0.0003 21 1 -0.4850 0.8401 -0.0004 22 1 3.1243 -3.7314 0.8905 23 1 3.1242 -3.7314 -0.8895 24 1 4.5002 -5.0533 -0.1157 25 1 4.7193 -6.4712 0.9418 26 1 6.0020 -6.8108 -1.1182 27 1 4.5599 -6.4764 -2.1075 28 1 4.8439 -8.7721 -0.1155 29 1 4.9695 -8.9217 -1.8847 30 1 1.6554 -10.0075 -1.1659 31 1 1.2602 -7.7210 -0.1187 32 1 2.6086 -8.2093 0.9400 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035234103.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:40 Heat of formation + Delta-G solvation = -92.980247 kcal Electronic energy + Delta-G solvation = -15670.490807 eV Core-core repulsion = 12949.982686 eV Total energy + Delta-G solvation = -2720.508121 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.05094 -37.84266 -35.85072 -32.51431 -32.43585 -30.79810 -28.65952 -25.60614 -25.09659 -23.17791 -21.03016 -19.11367 -17.83162 -17.31160 -16.77690 -15.90442 -15.37935 -14.84202 -14.81880 -14.57911 -14.01792 -13.44536 -13.25854 -13.14553 -12.77719 -12.61442 -12.06603 -11.92318 -11.32425 -11.23385 -11.07808 -11.03783 -10.79039 -10.66069 -10.37468 -9.82169 -9.41897 -9.08456 -8.55378 -8.25143 -6.52662 -6.23437 -3.94422 2.85176 2.99205 3.21123 3.23898 3.28916 3.54057 3.98036 4.18318 4.54237 4.63329 4.75705 4.87750 5.00348 5.04995 5.11879 5.30471 5.42335 5.54854 5.59469 5.62275 5.71939 5.76402 5.84296 5.90460 6.05830 6.08539 6.53362 7.39674 7.49283 7.57754 8.33235 8.49749 9.21871 10.84026 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.048411 B = 0.004971 C = 0.004608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.237220 B = 5631.595185 C = 6075.317569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.150 4.150 11 C 0.535 3.465 12 O -0.517 6.517 13 N -0.617 5.617 14 C 0.105 3.895 15 C -0.134 4.134 16 C -0.112 4.112 17 C 0.091 3.909 18 H 0.060 0.940 19 O -0.566 6.566 20 C 0.083 3.917 21 H 0.269 0.731 22 H 0.090 0.910 23 H 0.090 0.910 24 H 0.093 0.907 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.381 0.619 31 H 0.094 0.906 32 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.048 -14.662 -1.525 17.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.301 4.301 11 C 0.323 3.677 12 O -0.391 6.391 13 N -0.355 5.355 14 C -0.019 4.019 15 C -0.172 4.172 16 C -0.149 4.149 17 C 0.031 3.969 18 H 0.078 0.922 19 O -0.371 6.371 20 C -0.041 4.041 21 H 0.078 0.922 22 H 0.108 0.892 23 H 0.108 0.892 24 H 0.111 0.889 25 H 0.087 0.913 26 H 0.101 0.899 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.228 0.772 31 H 0.112 0.888 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.738 -14.929 -1.470 17.360 hybrid contribution 1.425 1.357 -0.038 1.968 sum 10.163 -13.572 -1.507 17.022 Atomic orbital electron populations 1.70019 1.05975 1.27477 1.46805 1.24991 0.95020 0.99031 0.94488 0.86166 0.79415 0.81542 0.78361 1.20254 1.20737 1.19673 1.22856 0.94887 0.91593 1.59046 0.90919 1.85411 1.04971 0.96381 1.96709 1.23555 1.06526 0.95214 1.04786 1.20383 0.86183 0.86243 0.74849 1.90688 1.15207 1.85218 1.48023 1.48034 1.06549 1.05311 1.75628 1.21782 0.79841 1.01778 0.98451 1.21913 1.01117 0.94656 0.99499 1.21473 0.93606 0.96629 1.03211 1.22173 0.95730 0.81542 0.97426 0.92178 1.86483 1.29047 1.24596 1.96972 1.22231 1.00988 0.82058 0.98779 0.92164 0.89161 0.89175 0.88856 0.91279 0.89892 0.91004 0.91056 0.91034 0.77152 0.88792 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.06 13.22 55.49 0.73 -25.33 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.23 29.55 -169.99 -5.02 16.21 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.54 -15.14 9.50 30.94 0.29 -14.85 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.88 16 10 C -0.15 -3.03 4.50 36.00 0.16 -2.87 16 11 C 0.54 10.18 7.72 -10.99 -0.08 10.10 16 12 O -0.52 -11.79 15.28 5.55 0.08 -11.70 16 13 N -0.62 -8.80 2.97 -172.75 -0.51 -9.31 16 14 C 0.10 1.13 6.34 -3.73 -0.02 1.10 16 15 C -0.13 -1.19 6.08 -26.63 -0.16 -1.35 16 16 C -0.11 -1.04 5.54 -26.69 -0.15 -1.19 16 17 C 0.09 0.97 3.62 -26.58 -0.10 0.88 16 18 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 19 O -0.57 -5.75 13.32 -35.23 -0.47 -6.22 16 20 C 0.08 1.03 6.06 -3.68 -0.02 1.01 16 21 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 22 H 0.09 1.68 7.94 -51.92 -0.41 1.27 16 23 H 0.09 1.67 7.69 -51.91 -0.40 1.27 16 24 H 0.09 1.01 5.93 -51.93 -0.31 0.70 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.38 2.49 9.08 45.56 0.41 2.91 16 31 H 0.09 1.29 7.00 -51.93 -0.36 0.93 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 281.85 15.07 4.25 4.25 Total: -1.00 -34.33 281.85 -6.90 -41.23 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -3.57 Total: -0.08 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -0.18 Total: -5.17 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: 0.22 Total: -34.64 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.38 Total: -17.92 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -34.33 -6.90 -41.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035234103.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.750 kcal (2) G-P(sol) polarization free energy of solvation -34.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds