Wall clock time and date at job start Sun Mar 29 2020 22:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86809 * 120.00309 * 2 1 4 4 H 1.48499 * 109.46886 * 269.99513 * 3 2 1 5 5 H 1.48494 * 109.46898 * 29.99807 * 3 2 1 6 6 H 1.48506 * 109.46994 * 150.00008 * 3 2 1 7 7 C 1.38801 * 119.99816 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99875 * 180.02562 * 7 2 1 9 9 S 1.76196 * 119.99909 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00140 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47451 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00064 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00193 * 180.02562 * 11 10 9 14 14 C 1.46928 * 120.63179 * 0.02562 * 13 11 10 15 15 C 1.53159 * 108.76987 * 233.59029 * 14 13 11 16 16 C 1.53046 * 109.32667 * 305.35456 * 15 14 13 17 17 C 1.53039 * 109.52798 * 61.37318 * 16 15 14 18 18 H 1.08997 * 109.49901 * 58.58690 * 17 16 15 19 19 O 1.42895 * 109.50168 * 178.65711 * 17 16 15 20 20 C 1.46931 * 120.63029 * 179.97438 * 13 11 10 21 21 H 0.97006 * 119.99689 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47344 * 59.99424 * 10 9 7 23 23 H 1.09004 * 109.46932 * 299.99694 * 10 9 7 24 24 H 1.08999 * 109.58766 * 353.37877 * 14 13 11 25 25 H 1.08998 * 109.58326 * 113.79952 * 14 13 11 26 26 H 1.08996 * 109.48005 * 185.40991 * 15 14 13 27 27 H 1.08994 * 109.50349 * 65.31594 * 15 14 13 28 28 H 1.09002 * 109.46115 * 301.35771 * 16 15 14 29 29 H 1.09004 * 109.45806 * 181.38656 * 16 15 14 30 30 H 0.96694 * 114.00537 * 179.97438 * 19 17 16 31 31 H 1.08998 * 109.58425 * 6.63242 * 20 13 11 32 32 H 1.08999 * 109.58795 * 246.19692 * 20 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 2.4980 2.0463 -1.4001 5 1 1.4479 2.6527 0.7000 6 1 3.5480 1.4401 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1292 -2.7279 0.0005 10 6 2.5156 -3.8915 0.0005 11 6 1.9871 -5.3027 -0.0001 12 8 0.7908 -5.5023 0.0000 13 7 2.8438 -6.3431 0.0003 14 6 4.2956 -6.1174 0.0019 15 6 4.9161 -6.8917 -1.1648 16 6 4.5090 -8.3639 -1.0692 17 6 2.9863 -8.4811 -1.1674 18 1 2.6483 -8.0507 -2.1100 19 8 2.6091 -9.8582 -1.1094 20 6 2.3437 -7.7247 0.0003 21 1 -0.4850 0.8401 -0.0004 22 1 3.1243 -3.7314 0.8905 23 1 3.1242 -3.7314 -0.8895 24 1 4.5002 -5.0533 -0.1157 25 1 4.7193 -6.4712 0.9418 26 1 6.0020 -6.8108 -1.1182 27 1 4.5599 -6.4764 -2.1075 28 1 4.8439 -8.7721 -0.1155 29 1 4.9695 -8.9217 -1.8847 30 1 1.6554 -10.0075 -1.1659 31 1 1.2602 -7.7210 -0.1187 32 1 2.6086 -8.2093 0.9400 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035234103.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:39 Heat of formation + Delta-G solvation = -119.007700 kcal Electronic energy + Delta-G solvation = -15671.619442 eV Core-core repulsion = 12949.982686 eV Total energy + Delta-G solvation = -2721.636756 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.26376 -38.98045 -36.84801 -34.58806 -33.53658 -31.95620 -29.94332 -27.69285 -26.23061 -24.05465 -22.05349 -20.42229 -19.53939 -18.36751 -18.08281 -17.12178 -16.87773 -16.66875 -15.95048 -15.75577 -15.47472 -14.71166 -14.54527 -14.37486 -14.08684 -13.62465 -13.44902 -13.18155 -12.91603 -12.88812 -12.60657 -12.12833 -12.03585 -11.72166 -11.54916 -11.24925 -11.14241 -10.91344 -10.27149 -9.70741 -8.68402 -8.34738 -6.13534 1.23958 1.43230 1.45314 1.51243 1.56516 2.02459 2.27196 2.99790 3.19680 3.25899 3.60698 3.77938 3.91204 3.96465 4.05632 4.22039 4.24723 4.41979 4.48740 4.63315 4.73954 4.76452 4.90728 5.03415 5.11280 5.33104 5.41792 5.46304 6.19397 6.22246 6.73507 7.06528 7.07757 8.74616 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.048411 B = 0.004971 C = 0.004608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.237220 B = 5631.595185 C = 6075.317569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.257 1.257 7 C -0.545 4.545 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.123 4.123 11 C 0.532 3.468 12 O -0.567 6.567 13 N -0.605 5.605 14 C 0.094 3.906 15 C -0.126 4.126 16 C -0.110 4.110 17 C 0.098 3.902 18 H 0.050 0.950 19 O -0.572 6.572 20 C 0.082 3.918 21 H 0.271 0.729 22 H 0.109 0.891 23 H 0.110 0.890 24 H 0.094 0.906 25 H 0.092 0.908 26 H 0.113 0.887 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.395 0.605 31 H 0.074 0.926 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.039 -15.017 -1.534 19.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.180 1.180 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.274 4.274 11 C 0.320 3.680 12 O -0.446 6.446 13 N -0.340 5.340 14 C -0.027 4.027 15 C -0.164 4.164 16 C -0.148 4.148 17 C 0.038 3.962 18 H 0.068 0.932 19 O -0.379 6.379 20 C -0.041 4.041 21 H 0.080 0.920 22 H 0.128 0.872 23 H 0.128 0.872 24 H 0.112 0.888 25 H 0.111 0.889 26 H 0.131 0.869 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.245 0.755 31 H 0.092 0.908 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 11.775 -15.331 -1.482 19.388 hybrid contribution 0.537 1.295 -0.027 1.402 sum 12.312 -14.036 -1.509 18.732 Atomic orbital electron populations 1.70188 1.08047 1.28627 1.48016 1.26132 0.95935 1.03331 0.93662 0.84946 0.78235 0.75934 0.78817 1.19277 1.20391 1.18046 1.23197 0.95372 0.91821 1.58924 0.89764 1.85610 1.10649 0.99375 1.97043 1.23369 1.03435 0.94043 1.06553 1.20201 0.85962 0.86764 0.75037 1.90671 1.17286 1.85792 1.50808 1.48041 1.07711 1.04923 1.73335 1.22154 0.77414 1.02524 1.00655 1.21895 1.02696 0.93823 0.97992 1.21503 0.92180 0.97058 1.04010 1.22083 0.96778 0.81490 0.95849 0.93206 1.86463 1.30629 1.24011 1.96826 1.22371 1.00132 0.81152 1.00449 0.91993 0.87248 0.87208 0.88759 0.88949 0.86891 0.91860 0.90275 0.90154 0.75528 0.90785 0.89734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.95 13.22 21.65 0.29 -55.67 16 2 C 0.01 0.80 5.49 84.86 0.47 1.26 16 3 Si 1.00 43.12 29.55 68.60 2.03 45.15 16 4 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 6 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 7 C -0.55 -30.90 9.50 67.95 0.65 -30.26 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 9 S -0.15 -8.57 20.57 -56.49 -1.16 -9.73 16 10 C -0.12 -4.89 4.50 71.23 0.32 -4.57 16 11 C 0.53 20.21 7.72 87.66 0.68 20.88 16 12 O -0.57 -26.72 15.28 -3.04 -0.05 -26.77 16 13 N -0.60 -16.34 2.97 -818.86 -2.43 -18.77 16 14 C 0.09 1.73 6.34 86.35 0.55 2.28 16 15 C -0.13 -1.80 6.08 30.66 0.19 -1.61 16 16 C -0.11 -1.70 5.54 30.62 0.17 -1.53 16 17 C 0.10 1.92 3.62 30.69 0.11 2.03 16 18 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 19 O -0.57 -10.56 13.32 -148.98 -1.98 -12.54 16 20 C 0.08 1.94 6.06 86.38 0.52 2.47 16 21 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 22 H 0.11 3.91 7.94 -2.39 -0.02 3.89 16 23 H 0.11 3.91 7.69 -2.39 -0.02 3.89 16 24 H 0.09 1.74 5.93 -2.39 -0.01 1.73 16 25 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.39 4.67 9.08 -74.06 -0.67 4.00 16 31 H 0.07 2.07 7.00 -2.39 -0.02 2.05 16 32 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -76.20 281.85 0.78 -75.42 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 0.45 Total: 11.97 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: 3.65 Total: -9.05 kcal Atomic # 7 Polarization: -72.29 SS G_CDS: -2.15 Total: -74.44 kcal Atomic # 8 Polarization: -37.28 SS G_CDS: -2.03 Total: -39.31 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.73 kcal Total: -76.20 0.78 -75.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035234103.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.592 kcal (2) G-P(sol) polarization free energy of solvation -76.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds