Wall clock time and date at job start Sun Mar 29 2020 22:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86797 * 120.00324 * 2 1 4 4 H 1.48499 * 109.46940 * 270.00350 * 3 2 1 5 5 H 1.48504 * 109.46574 * 29.99732 * 3 2 1 6 6 H 1.48498 * 109.47437 * 149.99723 * 3 2 1 7 7 C 1.38804 * 119.99465 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99251 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00555 * 0.02562 * 7 2 1 10 10 C 1.80997 * 100.00120 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47143 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99908 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00125 * 179.97438 * 11 10 9 14 14 C 1.47743 * 125.81757 * 0.02562 * 13 11 10 15 15 C 1.54903 * 104.89846 * 155.99136 * 14 13 11 16 16 C 1.55160 * 101.58590 * 36.95506 * 15 14 13 17 17 C 1.47018 * 125.64900 * 179.97438 * 13 11 10 18 18 H 1.09002 * 109.88241 * 300.42603 * 17 13 11 19 19 C 1.52999 * 109.88094 * 61.43718 * 17 13 11 20 20 O 1.42894 * 109.47062 * 293.27975 * 19 17 13 21 21 H 0.97000 * 119.99797 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47159 * 59.99719 * 10 9 7 23 23 H 1.09008 * 109.47090 * 299.99826 * 10 9 7 24 24 H 1.08995 * 110.37846 * 37.10595 * 14 13 11 25 25 H 1.09008 * 110.37794 * 274.87639 * 14 13 11 26 26 H 1.08995 * 111.00539 * 278.87892 * 15 14 13 27 27 H 1.09004 * 111.03372 * 155.04144 * 15 14 13 28 28 H 1.08993 * 110.71905 * 206.13219 * 16 15 14 29 29 H 1.09000 * 110.71664 * 82.85854 * 16 15 14 30 30 H 1.08995 * 109.47439 * 53.28569 * 19 17 13 31 31 H 1.09007 * 109.47042 * 173.28430 * 19 17 13 32 32 H 0.96706 * 114.00378 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7281 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3028 -0.0001 12 8 0.7910 -5.5023 -0.0010 13 7 2.8440 -6.3432 -0.0007 14 6 4.3184 -6.2491 -0.0003 15 6 4.8028 -7.5889 0.6078 16 6 3.7709 -8.5884 0.0216 17 6 2.4664 -7.7641 -0.0009 18 1 1.8699 -7.9892 0.8833 19 6 1.6673 -8.0900 -1.2642 20 8 0.4132 -7.4062 -1.2242 21 1 -0.4850 0.8401 -0.0004 22 1 3.1244 -3.7314 0.8905 23 1 3.1244 -3.7315 -0.8895 24 1 4.6452 -5.4122 0.6168 25 1 4.6919 -6.1375 -1.0183 26 1 4.7497 -7.5658 1.6962 27 1 5.8122 -7.8283 0.2730 28 1 3.6657 -9.4584 0.6696 29 1 4.0552 -8.8892 -0.9867 30 1 2.2283 -7.7691 -2.1419 31 1 1.4936 -9.1648 -1.3171 32 1 -0.1475 -7.5673 -1.9955 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042434058.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:56 Heat of formation + Delta-G solvation = -82.039160 kcal Electronic energy + Delta-G solvation = -15856.157670 eV Core-core repulsion = 13136.123990 eV Total energy + Delta-G solvation = -2720.033680 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.81186 -37.07375 -35.99570 -32.37953 -31.73130 -30.33602 -28.51196 -25.44097 -25.14002 -22.50171 -21.19679 -18.81881 -17.61944 -17.01501 -16.70192 -16.12231 -14.86762 -14.75881 -14.41715 -14.24946 -13.88290 -13.52646 -13.21896 -12.83349 -12.49371 -12.06098 -11.77582 -11.53409 -11.42837 -11.22435 -11.02565 -10.96518 -10.86574 -10.71535 -9.79812 -9.70352 -9.03345 -9.01728 -8.28754 -8.14354 -6.42700 -6.16540 -3.86031 3.03520 3.25136 3.29639 3.33708 3.35859 3.71912 4.18491 4.25668 4.39647 4.64269 4.86159 5.11193 5.18247 5.21313 5.29171 5.32973 5.40995 5.48645 5.52346 5.67518 5.70623 5.74181 5.90034 6.03803 6.11737 6.23961 6.63524 7.64224 7.91006 7.94250 8.40215 8.87977 9.28508 10.90919 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.039194 B = 0.005613 C = 0.005029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.223713 B = 4986.888773 C = 5565.849146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.071 0.929 9 S -0.060 6.060 10 C -0.145 4.145 11 C 0.538 3.462 12 O -0.474 6.474 13 N -0.625 5.625 14 C 0.099 3.901 15 C -0.132 4.132 16 C -0.124 4.124 17 C 0.139 3.861 18 H 0.077 0.923 19 C 0.066 3.934 20 O -0.532 6.532 21 H 0.268 0.732 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.077 0.923 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.040 0.960 31 H 0.044 0.956 32 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.121 -16.918 -1.578 19.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.744 3.256 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.089 0.911 9 S 0.167 5.833 10 C -0.296 4.296 11 C 0.325 3.675 12 O -0.344 6.344 13 N -0.364 5.364 14 C -0.024 4.024 15 C -0.170 4.170 16 C -0.162 4.162 17 C 0.034 3.966 18 H 0.095 0.905 19 C -0.014 4.014 20 O -0.334 6.334 21 H 0.078 0.922 22 H 0.103 0.897 23 H 0.102 0.898 24 H 0.096 0.904 25 H 0.083 0.917 26 H 0.095 0.905 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 8.317 -16.797 -0.994 18.770 hybrid contribution 1.922 1.035 -0.622 2.270 sum 10.239 -15.762 -1.615 18.865 Atomic orbital electron populations 1.70028 1.05940 1.27352 1.47028 1.24986 0.95008 0.98961 0.94629 0.86179 0.79415 0.81657 0.78306 1.20307 1.20766 1.19729 1.22883 0.94890 0.91806 1.58716 0.91056 1.85386 1.05134 0.96143 1.96657 1.23514 1.06192 0.95529 1.04328 1.19942 0.86110 0.85046 0.76373 1.90779 1.14146 1.84263 1.45241 1.48662 1.06098 1.04964 1.76699 1.22312 0.80999 0.98369 1.00745 1.22767 0.98813 0.94296 1.01115 1.22600 0.93669 0.97896 1.02074 1.21476 0.95069 0.82025 0.97996 0.90451 1.22528 0.86766 0.94834 0.97266 1.87035 1.28309 1.71915 1.46190 0.92245 0.89744 0.89806 0.90438 0.91731 0.90454 0.89865 0.89937 0.90488 0.94154 0.93792 0.78981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.71 13.22 55.49 0.73 -25.97 16 2 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 3 Si 0.92 21.78 29.55 -169.99 -5.02 16.75 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.53 -15.65 9.50 30.94 0.29 -15.36 16 8 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 9 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 10 C -0.14 -3.16 5.18 36.01 0.19 -2.97 16 11 C 0.54 11.15 7.61 -10.99 -0.08 11.07 16 12 O -0.47 -11.58 13.13 -18.57 -0.24 -11.83 16 13 N -0.62 -9.78 3.08 -162.77 -0.50 -10.28 16 14 C 0.10 1.14 6.71 -2.36 -0.02 1.12 16 15 C -0.13 -1.09 7.08 -24.58 -0.17 -1.26 16 16 C -0.12 -1.04 6.47 -24.89 -0.16 -1.20 16 17 C 0.14 1.81 3.29 -66.96 -0.22 1.58 16 18 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 19 C 0.07 0.83 6.46 37.16 0.24 1.07 16 20 O -0.53 -8.77 10.33 -59.36 -0.61 -9.38 16 21 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 22 H 0.08 1.72 7.86 -51.91 -0.41 1.31 16 23 H 0.08 1.71 8.14 -51.91 -0.42 1.29 16 24 H 0.08 0.89 7.51 -51.93 -0.39 0.50 16 25 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 26 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.55 7.85 -51.93 -0.41 0.14 16 30 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.36 4.42 9.12 45.56 0.42 4.83 16 LS Contribution 282.61 15.07 4.26 4.26 Total: -1.00 -36.57 282.61 -7.35 -43.91 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -3.72 Total: 0.35 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -0.03 Total: -3.90 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: 0.23 Total: -36.25 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.86 Total: -21.21 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -36.57 -7.35 -43.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042434058.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.126 kcal (2) G-P(sol) polarization free energy of solvation -36.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds