Wall clock time and date at job start Sun Mar 29 2020 22:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86797 * 120.00324 * 2 1 4 4 H 1.48499 * 109.46940 * 270.00350 * 3 2 1 5 5 H 1.48504 * 109.46574 * 29.99732 * 3 2 1 6 6 H 1.48498 * 109.47437 * 149.99723 * 3 2 1 7 7 C 1.38804 * 119.99465 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99251 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00555 * 0.02562 * 7 2 1 10 10 C 1.80997 * 100.00120 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47143 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99908 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00125 * 179.97438 * 11 10 9 14 14 C 1.47743 * 125.81757 * 0.02562 * 13 11 10 15 15 C 1.54903 * 104.89846 * 155.99136 * 14 13 11 16 16 C 1.55160 * 101.58590 * 36.95506 * 15 14 13 17 17 C 1.47018 * 125.64900 * 179.97438 * 13 11 10 18 18 H 1.09002 * 109.88241 * 300.42603 * 17 13 11 19 19 C 1.52999 * 109.88094 * 61.43718 * 17 13 11 20 20 O 1.42894 * 109.47062 * 293.27975 * 19 17 13 21 21 H 0.97000 * 119.99797 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47159 * 59.99719 * 10 9 7 23 23 H 1.09008 * 109.47090 * 299.99826 * 10 9 7 24 24 H 1.08995 * 110.37846 * 37.10595 * 14 13 11 25 25 H 1.09008 * 110.37794 * 274.87639 * 14 13 11 26 26 H 1.08995 * 111.00539 * 278.87892 * 15 14 13 27 27 H 1.09004 * 111.03372 * 155.04144 * 15 14 13 28 28 H 1.08993 * 110.71905 * 206.13219 * 16 15 14 29 29 H 1.09000 * 110.71664 * 82.85854 * 16 15 14 30 30 H 1.08995 * 109.47439 * 53.28569 * 19 17 13 31 31 H 1.09007 * 109.47042 * 173.28430 * 19 17 13 32 32 H 0.96706 * 114.00378 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7281 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3028 -0.0001 12 8 0.7910 -5.5023 -0.0010 13 7 2.8440 -6.3432 -0.0007 14 6 4.3184 -6.2491 -0.0003 15 6 4.8028 -7.5889 0.6078 16 6 3.7709 -8.5884 0.0216 17 6 2.4664 -7.7641 -0.0009 18 1 1.8699 -7.9892 0.8833 19 6 1.6673 -8.0900 -1.2642 20 8 0.4132 -7.4062 -1.2242 21 1 -0.4850 0.8401 -0.0004 22 1 3.1244 -3.7314 0.8905 23 1 3.1244 -3.7315 -0.8895 24 1 4.6452 -5.4122 0.6168 25 1 4.6919 -6.1375 -1.0183 26 1 4.7497 -7.5658 1.6962 27 1 5.8122 -7.8283 0.2730 28 1 3.6657 -9.4584 0.6696 29 1 4.0552 -8.8892 -0.9867 30 1 2.2283 -7.7691 -2.1419 31 1 1.4936 -9.1648 -1.3171 32 1 -0.1475 -7.5673 -1.9955 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042434058.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:55 Heat of formation + Delta-G solvation = -109.120273 kcal Electronic energy + Delta-G solvation = -15857.331995 eV Core-core repulsion = 13136.123990 eV Total energy + Delta-G solvation = -2721.208005 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.04133 -38.45036 -37.11507 -34.59563 -32.99618 -31.31194 -30.05916 -27.67066 -26.09692 -23.63903 -22.06854 -20.29078 -19.44491 -18.27062 -17.86745 -17.43452 -16.89123 -16.41531 -15.94501 -15.46527 -15.20689 -14.68915 -14.58970 -14.10610 -13.95450 -13.39345 -13.19498 -12.99041 -12.88703 -12.71810 -12.56121 -12.16249 -12.07565 -11.71953 -11.59373 -11.14813 -10.82460 -10.66827 -10.27556 -9.55121 -8.67967 -8.35127 -6.13870 1.25543 1.42159 1.45605 1.56713 1.76867 2.17211 2.27861 2.98577 3.24739 3.33626 3.60309 3.78835 3.98953 4.18104 4.20781 4.29182 4.33443 4.42856 4.44920 4.60656 4.65323 4.83243 4.95341 5.07189 5.12968 5.35043 5.40006 5.53145 6.18799 6.55014 6.98869 7.05403 7.35662 8.74400 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.039194 B = 0.005613 C = 0.005029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.223713 B = 4986.888773 C = 5565.849146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 1.001 2.999 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.548 4.548 8 H 0.080 0.920 9 S -0.149 6.149 10 C -0.118 4.118 11 C 0.533 3.467 12 O -0.524 6.524 13 N -0.620 5.620 14 C 0.085 3.915 15 C -0.121 4.121 16 C -0.110 4.110 17 C 0.125 3.875 18 H 0.054 0.946 19 C 0.061 3.939 20 O -0.571 6.571 21 H 0.272 0.728 22 H 0.098 0.902 23 H 0.098 0.902 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.117 0.883 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.045 0.955 31 H 0.078 0.922 32 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.248 -17.853 -1.834 22.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.822 3.178 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.182 1.182 7 C -0.696 4.696 8 H 0.099 0.901 9 S 0.078 5.922 10 C -0.269 4.269 11 C 0.320 3.680 12 O -0.398 6.398 13 N -0.357 5.357 14 C -0.037 4.037 15 C -0.159 4.159 16 C -0.148 4.148 17 C 0.022 3.978 18 H 0.073 0.927 19 C -0.018 4.018 20 O -0.377 6.377 21 H 0.081 0.919 22 H 0.117 0.883 23 H 0.116 0.884 24 H 0.094 0.906 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.135 0.865 28 H 0.123 0.877 29 H 0.116 0.884 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 11.499 -17.786 -1.257 21.217 hybrid contribution 0.994 1.184 -0.547 1.640 sum 12.493 -16.602 -1.804 20.855 Atomic orbital electron populations 1.70195 1.08040 1.28658 1.47948 1.26161 0.95983 1.03357 0.93615 0.84921 0.78156 0.75807 0.78874 1.19161 1.20131 1.18202 1.23204 0.95277 0.92069 1.59059 0.90137 1.85568 1.10544 0.99081 1.96985 1.23310 1.03204 0.94829 1.05569 1.19714 0.86034 0.85625 0.76626 1.90759 1.16161 1.84939 1.47955 1.48622 1.07638 1.05152 1.74261 1.22708 0.78205 1.00638 1.02120 1.22786 1.00292 0.91811 1.00971 1.22635 0.90509 0.97652 1.03992 1.21874 0.97600 0.80962 0.97364 0.92745 1.22739 0.85423 0.96488 0.97132 1.87006 1.30086 1.73167 1.47430 0.91937 0.88327 0.88369 0.90635 0.90180 0.90518 0.86488 0.87661 0.88357 0.93692 0.90414 0.77557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.40 13.22 21.65 0.29 -57.12 16 2 C 0.01 0.79 5.49 84.86 0.47 1.25 16 3 Si 1.00 44.48 29.55 68.60 2.03 46.51 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.55 -32.49 9.50 67.96 0.65 -31.84 16 8 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 9 S -0.15 -8.73 20.57 -56.49 -1.16 -9.89 16 10 C -0.12 -5.18 5.18 71.24 0.37 -4.81 16 11 C 0.53 22.46 7.61 87.66 0.67 23.13 16 12 O -0.52 -26.69 13.13 20.05 0.26 -26.43 16 13 N -0.62 -18.77 3.08 -787.27 -2.42 -21.19 16 14 C 0.09 1.72 6.71 86.79 0.58 2.30 16 15 C -0.12 -1.49 7.08 31.99 0.23 -1.26 16 16 C -0.11 -1.39 6.47 31.78 0.21 -1.19 16 17 C 0.13 3.07 3.29 45.34 0.15 3.22 16 18 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 19 C 0.06 1.46 6.46 71.98 0.47 1.92 16 20 O -0.57 -19.31 10.33 -125.91 -1.30 -20.61 16 21 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 22 H 0.10 4.00 7.86 -2.39 -0.02 3.98 16 23 H 0.10 3.98 8.14 -2.39 -0.02 3.96 16 24 H 0.08 1.56 7.51 -2.39 -0.02 1.54 16 25 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 26 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.10 0.89 7.85 -2.39 -0.02 0.88 16 30 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.38 9.52 9.12 -74.05 -0.68 8.85 16 Total: -1.00 -83.23 282.61 1.91 -81.32 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.44 Total: 14.68 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: 3.78 Total: -7.27 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -2.14 Total: -78.31 kcal Atomic # 8 Polarization: -46.00 SS G_CDS: -1.04 Total: -47.04 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.16 Total: -9.89 kcal Total: -83.23 1.91 -81.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042434058.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.799 kcal (2) G-P(sol) polarization free energy of solvation -83.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds