Wall clock time and date at job start Sun Mar 29 2020 22:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86801 * 119.99644 * 2 1 4 4 H 1.48504 * 109.47325 * 269.99845 * 3 2 1 5 5 H 1.48504 * 109.47471 * 30.00331 * 3 2 1 6 6 H 1.48510 * 109.47158 * 150.00243 * 3 2 1 7 7 C 1.38797 * 120.00484 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99874 * 359.97438 * 7 2 1 9 9 S 1.76206 * 120.00177 * 179.97438 * 7 2 1 10 10 C 1.81001 * 99.99730 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46942 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99682 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00124 * 180.02562 * 11 10 9 14 14 C 1.46503 * 120.00018 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.47044 * 179.97438 * 14 13 11 16 16 H 1.09002 * 110.27448 * 59.29962 * 15 14 13 17 17 C 1.54945 * 110.39100 * 181.44554 * 15 14 13 18 18 C 1.55304 * 100.94045 * 155.40253 * 17 15 14 19 19 C 1.54376 * 102.25567 * 325.86882 * 18 17 15 20 20 O 1.43240 * 107.58930 * 21.35352 * 19 18 17 21 21 H 0.96993 * 120.00090 * 359.97438 * 1 2 3 22 22 H 1.08991 * 109.47521 * 60.00129 * 10 9 7 23 23 H 1.09005 * 109.47307 * 299.99659 * 10 9 7 24 24 H 0.97003 * 120.00048 * 359.97438 * 13 11 10 25 25 H 1.09001 * 109.46751 * 60.00013 * 14 13 11 26 26 H 1.08993 * 109.47488 * 299.99665 * 14 13 11 27 27 H 1.08997 * 111.12470 * 273.31972 * 17 15 14 28 28 H 1.08995 * 111.12619 * 37.48960 * 17 15 14 29 29 H 1.08998 * 110.85543 * 207.67443 * 18 17 15 30 30 H 1.09009 * 111.02412 * 84.13543 * 18 17 15 31 31 H 1.08999 * 109.83271 * 261.84174 * 19 18 17 32 32 H 1.08999 * 109.91049 * 140.90833 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6528 0.7001 6 1 3.5479 1.4403 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0005 9 16 3.7724 -1.2019 -0.0012 10 6 4.0868 -2.9844 -0.0025 11 6 5.5732 -3.2323 -0.0026 12 8 6.3441 -2.2960 -0.0024 13 7 6.0459 -4.4944 -0.0041 14 6 7.4910 -4.7354 -0.0048 15 6 7.7567 -6.2422 -0.0057 16 1 7.3079 -6.7043 -0.8850 17 6 9.2804 -6.5217 0.0302 18 6 9.3048 -7.9417 0.6586 19 6 8.1078 -7.8899 1.6321 20 8 7.2372 -6.8409 1.1922 21 1 -0.4850 0.8400 0.0004 22 1 3.6436 -3.4308 -0.8926 23 1 3.6442 -3.4321 0.8874 24 1 5.4293 -5.2432 -0.0047 25 1 7.9341 -4.2892 0.8856 26 1 7.9337 -4.2875 -0.8944 27 1 9.7021 -6.5296 -0.9749 28 1 9.7969 -5.8021 0.6654 29 1 10.2365 -8.1112 1.1982 30 1 9.1537 -8.7084 -0.1015 31 1 8.4608 -7.6785 2.6414 32 1 7.5765 -8.8415 1.6180 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046024200.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:02 Heat of formation + Delta-G solvation = -93.026007 kcal Electronic energy + Delta-G solvation = -15131.100174 eV Core-core repulsion = 12410.590068 eV Total energy + Delta-G solvation = -2720.510106 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.97736 -38.88364 -34.60584 -32.52921 -32.40671 -30.92309 -28.91462 -25.66875 -25.25250 -22.11457 -21.56371 -20.28609 -17.87898 -17.30886 -16.56749 -16.08728 -15.75049 -15.29378 -14.93732 -14.73422 -13.93084 -13.72695 -13.37554 -13.02860 -12.79818 -12.74877 -12.14560 -11.91468 -11.65826 -11.57287 -11.22866 -11.21934 -10.97896 -10.55937 -9.83534 -9.82281 -9.47167 -8.98247 -8.90087 -8.46053 -6.87805 -6.25748 -3.97076 2.80431 3.03930 3.27948 3.35698 3.49020 3.53660 3.74712 4.07528 4.36265 4.39214 4.49473 4.76705 4.78383 4.82876 4.99055 5.13301 5.26427 5.29755 5.35820 5.40565 5.46006 5.58404 5.70499 5.81748 5.86124 6.08201 6.54414 6.72059 7.69538 7.97509 8.45270 8.55604 9.20540 10.83588 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.065883 B = 0.004029 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.892178 B = 6948.799933 C = 7233.958512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.143 6.143 10 C -0.123 4.123 11 C 0.531 3.469 12 O -0.524 6.524 13 N -0.731 5.731 14 C 0.125 3.875 15 C 0.068 3.932 16 H 0.079 0.921 17 C -0.148 4.148 18 C -0.156 4.156 19 C 0.050 3.950 20 O -0.375 6.375 21 H 0.270 0.730 22 H 0.097 0.903 23 H 0.098 0.902 24 H 0.403 0.597 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.626 -16.681 0.153 24.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.083 5.917 10 C -0.274 4.274 11 C 0.316 3.684 12 O -0.399 6.399 13 N -0.386 5.386 14 C 0.000 4.000 15 C 0.010 3.990 16 H 0.096 0.904 17 C -0.187 4.187 18 C -0.193 4.193 19 C -0.027 4.027 20 O -0.295 6.295 21 H 0.080 0.920 22 H 0.115 0.885 23 H 0.116 0.884 24 H 0.237 0.763 25 H 0.090 0.910 26 H 0.097 0.903 27 H 0.106 0.894 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 18.558 -14.951 0.262 23.833 hybrid contribution -0.898 -0.863 -0.102 1.250 sum 17.660 -15.814 0.160 23.706 Atomic orbital electron populations 1.69940 1.05923 1.27735 1.48219 1.24715 0.94449 0.98966 0.93206 0.86730 0.81916 0.83256 0.79910 1.19222 1.19967 1.15903 1.22333 0.88318 0.97549 1.58617 0.89379 1.84760 1.09221 1.00252 1.97429 1.23272 0.94054 1.04195 1.05866 1.20276 0.90607 0.82255 0.75215 1.90690 1.58813 1.42249 1.48101 1.45845 1.07236 1.08150 1.77322 1.21445 0.82498 0.93082 1.02942 1.23271 0.93601 0.93247 0.88832 0.90359 1.23241 0.95669 0.97046 1.02696 1.23117 0.99417 0.97462 0.99322 1.23125 0.90431 0.91119 0.97984 1.88480 1.48051 1.50483 1.42489 0.91967 0.88500 0.88393 0.76267 0.90982 0.90310 0.89443 0.89739 0.89882 0.90431 0.91254 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.95 13.97 55.49 0.78 -26.18 16 2 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 3 Si 0.86 22.09 27.74 -169.99 -4.71 17.37 16 4 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.24 -6.06 6.74 56.52 0.38 -5.68 16 7 C -0.52 -15.28 10.04 30.94 0.31 -14.97 16 8 H 0.09 2.69 8.03 -52.49 -0.42 2.27 16 9 S -0.14 -3.71 18.55 -107.50 -1.99 -5.71 16 10 C -0.12 -2.48 6.16 36.01 0.22 -2.26 16 11 C 0.53 9.89 7.85 -10.99 -0.09 9.81 16 12 O -0.52 -11.67 15.86 5.56 0.09 -11.58 16 13 N -0.73 -10.18 5.49 -60.29 -0.33 -10.52 16 14 C 0.12 1.46 5.41 -4.04 -0.02 1.44 16 15 C 0.07 0.61 3.49 -25.70 -0.09 0.52 16 16 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 17 C -0.15 -0.98 6.57 -24.48 -0.16 -1.14 16 18 C -0.16 -0.88 7.02 -24.79 -0.17 -1.05 16 19 C 0.05 0.38 7.79 37.88 0.30 0.67 16 20 O -0.38 -4.01 10.95 -35.23 -0.39 -4.40 16 21 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 22 H 0.10 1.80 8.14 -51.92 -0.42 1.38 16 23 H 0.10 1.86 8.14 -51.91 -0.42 1.44 16 24 H 0.40 4.75 8.45 -40.82 -0.34 4.40 16 25 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.57 8.06 -51.93 -0.42 0.15 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.38 8.14 -51.92 -0.42 -0.05 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 287.60 15.07 4.33 4.33 Total: -1.00 -34.57 287.60 -6.60 -41.17 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -4.57 Total: -0.25 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: 0.20 Total: -4.24 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.44 Total: -36.69 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.30 Total: -15.98 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.71 Total: 17.37 kcal Atomic # 16 Polarization: -3.71 SS G_CDS: -1.99 Total: -5.71 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -34.57 -6.60 -41.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046024200.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.858 kcal (2) G-P(sol) polarization free energy of solvation -34.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds