Wall clock time and date at job start Sun Mar 29 2020 22:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86796 * 119.99737 * 2 1 4 4 H 1.48496 * 109.47275 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47039 * 299.99729 * 3 2 1 6 6 H 1.48503 * 109.47184 * 59.99701 * 3 2 1 7 7 C 1.38798 * 120.00310 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00115 * 180.02562 * 7 2 1 9 9 S 1.76198 * 119.99741 * 0.02562 * 7 2 1 10 10 C 1.81007 * 100.00035 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47411 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99640 * 0.02562 * 11 10 9 13 13 N 1.34769 * 119.99975 * 179.97438 * 11 10 9 14 14 C 1.46504 * 120.00037 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47188 * 179.97438 * 14 13 11 16 16 H 1.08997 * 110.67587 * 303.48640 * 15 14 13 17 17 C 1.55000 * 110.61526 * 180.52047 * 15 14 13 18 18 C 1.54818 * 102.09030 * 204.47771 * 17 15 14 19 19 C 1.54097 * 104.18808 * 20.87976 * 18 17 15 20 20 O 1.43745 * 107.29442 * 2.03270 * 19 18 17 21 21 H 0.97001 * 120.00705 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47191 * 59.99627 * 10 9 7 23 23 H 1.09000 * 109.47017 * 300.00145 * 10 9 7 24 24 H 0.97003 * 120.00346 * 359.97438 * 13 11 10 25 25 H 1.09001 * 109.47450 * 59.99463 * 14 13 11 26 26 H 1.09000 * 109.46884 * 299.99903 * 14 13 11 27 27 H 1.08996 * 110.90766 * 86.28222 * 17 15 14 28 28 H 1.09001 * 110.94010 * 322.68241 * 17 15 14 29 29 H 1.09004 * 110.48564 * 262.20686 * 18 17 15 30 30 H 1.08997 * 110.48807 * 139.56009 * 18 17 15 31 31 H 1.08998 * 109.88273 * 242.60534 * 19 18 17 32 32 H 1.08997 * 109.87725 * 121.45198 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2019 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5160 -3.8914 0.0005 11 6 1.9876 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0011 13 7 2.8444 -6.3430 0.0008 14 6 2.3307 -7.7150 0.0008 15 6 3.5028 -8.6984 -0.0004 16 1 4.1586 -8.5146 -0.8513 17 6 2.9884 -10.1606 -0.0135 18 6 4.1773 -10.9282 0.6142 19 6 4.9602 -9.8475 1.3848 20 8 4.2402 -8.6120 1.2379 21 1 -0.4851 0.8400 -0.0004 22 1 3.1247 -3.7313 0.8905 23 1 3.1246 -3.7313 -0.8894 24 1 3.8012 -6.1834 -0.0003 25 1 1.7217 -7.8751 -0.8889 26 1 1.7224 -7.8752 0.8910 27 1 2.8022 -10.4982 -1.0330 28 1 2.0923 -10.2638 0.5984 29 1 4.8006 -11.3687 -0.1640 30 1 3.8169 -11.6978 1.2968 31 1 5.9612 -9.7452 0.9658 32 1 5.0233 -10.1165 2.4392 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000046024202.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:05 Heat of formation + Delta-G solvation = -119.254966 kcal Electronic energy + Delta-G solvation = -15076.215261 eV Core-core repulsion = 12354.567782 eV Total energy + Delta-G solvation = -2721.647479 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.88654 -40.03482 -35.83302 -34.58458 -33.10792 -32.01368 -30.07771 -27.69457 -26.19275 -22.68164 -22.37866 -21.57026 -19.84499 -17.91560 -17.85766 -17.27668 -16.88188 -16.60954 -16.38013 -15.97660 -15.71647 -14.73170 -14.55561 -14.37167 -14.22094 -13.37495 -13.27843 -13.16140 -12.90523 -12.67630 -12.61915 -12.28207 -12.21083 -11.70260 -11.56649 -11.15685 -10.97281 -10.64596 -10.28173 -10.15729 -8.67120 -8.34701 -6.13066 1.26839 1.42027 1.47019 1.58581 1.59650 2.24487 2.28569 2.84041 2.99390 3.32275 3.57391 3.77881 3.97198 4.00684 4.13557 4.20478 4.29249 4.43555 4.50409 4.56312 4.66634 4.86280 4.93195 4.97366 5.09352 5.21941 5.39265 5.42285 5.94293 6.20244 6.47125 7.06509 7.21238 8.74895 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.062235 B = 0.003833 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.802630 B = 7302.902574 C = 7641.199140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 1.001 2.999 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.151 6.151 10 C -0.129 4.129 11 C 0.533 3.467 12 O -0.567 6.567 13 N -0.711 5.711 14 C 0.126 3.874 15 C 0.068 3.932 16 H 0.094 0.906 17 C -0.146 4.146 18 C -0.149 4.149 19 C 0.037 3.963 20 O -0.400 6.400 21 H 0.271 0.729 22 H 0.107 0.893 23 H 0.112 0.888 24 H 0.416 0.584 25 H 0.085 0.915 26 H 0.057 0.943 27 H 0.102 0.898 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.968 -20.905 -0.662 24.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.823 3.177 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.695 4.695 8 H 0.101 0.899 9 S 0.076 5.924 10 C -0.280 4.280 11 C 0.319 3.681 12 O -0.445 6.445 13 N -0.365 5.365 14 C 0.002 3.998 15 C 0.011 3.989 16 H 0.112 0.888 17 C -0.184 4.184 18 C -0.187 4.187 19 C -0.039 4.039 20 O -0.320 6.320 21 H 0.080 0.920 22 H 0.125 0.875 23 H 0.130 0.870 24 H 0.252 0.748 25 H 0.103 0.897 26 H 0.075 0.925 27 H 0.121 0.879 28 H 0.094 0.906 29 H 0.111 0.889 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.851 -21.006 -0.511 23.649 hybrid contribution 1.796 1.168 0.026 2.143 sum 12.648 -19.838 -0.485 23.532 Atomic orbital electron populations 1.70190 1.07981 1.28585 1.48028 1.26150 0.95998 1.03365 0.93695 0.84874 0.78562 0.76195 0.78107 1.18063 1.19811 1.19922 1.23244 0.95369 0.91986 1.58862 0.89931 1.85552 1.10533 0.99236 1.97049 1.23368 1.03582 0.94322 1.06772 1.20078 0.86206 0.86722 0.75113 1.90683 1.17310 1.86140 1.50404 1.45708 1.10349 1.05106 1.75296 1.21491 0.96026 0.79701 1.02554 1.23447 0.92101 0.95148 0.88219 0.88790 1.23132 0.99207 0.92539 1.03562 1.22936 0.96692 0.98386 1.00675 1.23355 0.95621 0.83158 1.01770 1.88926 1.64099 1.38157 1.40801 0.91958 0.87492 0.87030 0.74787 0.89724 0.92463 0.87939 0.90573 0.88858 0.89471 0.91241 0.89524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.60 13.22 21.65 0.29 -56.31 16 2 C 0.01 0.72 5.49 84.86 0.47 1.19 16 3 Si 1.00 44.11 29.55 68.60 2.03 46.14 16 4 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 5 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.55 -31.79 9.50 67.95 0.65 -31.14 16 8 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 9 S -0.15 -8.58 20.57 -56.49 -1.16 -9.74 16 10 C -0.13 -5.34 6.16 71.24 0.44 -4.90 16 11 C 0.53 20.72 7.85 87.66 0.69 21.41 16 12 O -0.57 -27.21 15.86 -3.04 -0.05 -27.25 16 13 N -0.71 -19.77 5.54 -463.06 -2.57 -22.34 16 14 C 0.13 3.00 5.42 86.38 0.47 3.46 16 15 C 0.07 1.15 3.38 31.28 0.11 1.25 16 16 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 17 C -0.15 -1.77 6.59 31.90 0.21 -1.56 16 18 C -0.15 -1.41 7.01 31.59 0.22 -1.18 16 19 C 0.04 0.49 7.70 72.35 0.56 1.05 16 20 O -0.40 -8.19 11.21 -148.98 -1.67 -9.86 16 21 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 22 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 23 H 0.11 4.11 8.14 -2.39 -0.02 4.09 16 24 H 0.42 9.21 8.47 -92.71 -0.79 8.42 16 25 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.08 1.03 8.06 -2.39 -0.02 1.01 16 29 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.74 16 32 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -77.13 290.44 1.00 -76.14 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.33 Total: 13.64 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: 3.80 Total: -10.41 kcal Atomic # 7 Polarization: -76.37 SS G_CDS: -2.28 Total: -78.65 kcal Atomic # 8 Polarization: -35.40 SS G_CDS: -1.72 Total: -37.12 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -77.13 1.00 -76.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046024202.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.118 kcal (2) G-P(sol) polarization free energy of solvation -77.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds