Wall clock time and date at job start Sun Mar 29 2020 22:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39777 * 120.08009 * 273.36784 * 3 2 1 5 5 C 1.37685 * 119.92204 * 179.74394 * 4 3 2 6 6 C 1.39112 * 120.07867 * 0.51571 * 5 4 3 7 7 N 1.39542 * 119.92349 * 179.74210 * 6 5 4 8 8 C 1.34774 * 119.99696 * 324.87366 * 7 6 5 9 9 O 1.21581 * 120.00280 * 4.57817 * 8 7 6 10 10 N 1.34776 * 120.00141 * 184.58247 * 8 7 6 11 11 C 1.46498 * 120.00231 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.47142 * 179.97438 * 11 10 8 13 13 H 1.08001 * 120.00295 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00246 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99944 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00284 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.46901 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46746 * 119.99894 * 16 14 12 19 19 H 1.48497 * 109.47232 * 239.99746 * 16 14 12 20 20 C 1.39106 * 120.15569 * 359.75903 * 6 5 4 21 21 C 1.37687 * 120.08473 * 359.97438 * 20 6 5 22 22 H 1.08004 * 120.03820 * 359.97438 * 4 3 2 23 23 H 1.08000 * 119.96863 * 180.23310 * 5 4 3 24 24 H 0.97000 * 120.00441 * 144.86510 * 7 6 5 25 25 H 0.97005 * 119.99985 * 359.97438 * 10 8 7 26 26 H 1.08999 * 109.47193 * 299.99744 * 11 10 8 27 27 H 1.09003 * 109.47124 * 59.99941 * 11 10 8 28 28 H 0.96993 * 120.00053 * 179.97438 * 15 14 12 29 29 H 1.08007 * 119.95415 * 179.97438 * 20 6 5 30 30 H 1.07997 * 120.03909 * 179.97438 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2686 -0.0701 1.2074 5 6 4.6455 -0.0746 1.2033 6 6 5.3394 0.0020 0.0001 7 7 6.7348 0.0026 0.0000 8 6 7.4083 0.6128 0.9952 9 8 6.8031 1.0901 1.9355 10 7 8.7528 0.6940 0.9482 11 6 9.4849 1.3577 2.0296 12 6 10.9627 1.3118 1.7379 13 1 11.3208 0.8355 0.8371 14 6 11.8577 1.8780 2.6208 15 7 11.4218 2.4576 3.7179 16 14 13.6895 1.8205 2.2594 17 1 13.9182 1.1171 0.9718 18 1 14.2196 3.2046 2.1678 19 1 14.3869 1.0947 3.3512 20 6 4.6454 0.0783 -1.2031 21 6 3.2686 0.0777 -1.2070 22 1 2.7306 -0.1249 2.1423 23 1 5.1875 -0.1330 2.1356 24 1 7.2200 -0.4362 -0.7161 25 1 9.2358 0.3129 0.1981 26 1 9.1610 2.3958 2.1040 27 1 9.2848 0.8462 2.9712 28 1 12.0514 2.8555 4.3392 29 1 5.1875 0.1380 -2.1354 30 1 2.7306 0.1374 -2.1416 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048331363.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:00 Heat of formation + Delta-G solvation = 23.677000 kcal Electronic energy + Delta-G solvation = -15932.479163 eV Core-core repulsion = 13113.878479 eV Total energy + Delta-G solvation = -2818.600684 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.45061 -38.74039 -36.55957 -34.69578 -34.24999 -32.46182 -31.18889 -29.99960 -27.19980 -23.99637 -23.00760 -22.38649 -20.45155 -19.01168 -18.36746 -17.67600 -16.13247 -15.53903 -15.01445 -14.83093 -14.52649 -14.29011 -14.06458 -13.72958 -13.56170 -13.20395 -12.91093 -12.53969 -12.25800 -12.08473 -11.96094 -11.34012 -11.01104 -10.99052 -10.39263 -10.23488 -9.62001 -9.46086 -9.10809 -8.84652 -8.29283 -7.88882 -6.24006 -4.31372 0.68890 1.26962 2.58445 2.80713 2.98323 3.19095 3.26933 3.29440 3.57344 3.84849 3.88204 4.25301 4.68272 4.76035 4.82429 5.12695 5.15330 5.37049 5.48163 5.82704 5.95058 6.20390 6.26753 6.43244 6.87590 6.93518 7.26537 7.39360 7.40640 7.42692 7.70157 7.89672 8.56167 8.72774 9.03573 9.35645 10.86108 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.073834 B = 0.003648 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.136416 B = 7672.950256 C = 7969.625549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C 0.265 3.735 3 C -0.068 4.068 4 C -0.047 4.047 5 C -0.127 4.127 6 C 0.214 3.786 7 N -0.694 5.694 8 C 0.689 3.311 9 O -0.579 6.579 10 N -0.719 5.719 11 C 0.265 3.735 12 C -0.545 4.545 13 H 0.064 0.936 14 C 0.064 3.936 15 N -0.884 5.884 16 Si 0.905 3.095 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.160 4.160 21 C -0.048 4.048 22 H 0.133 0.867 23 H 0.155 0.845 24 H 0.407 0.593 25 H 0.390 0.610 26 H 0.028 0.972 27 H 0.028 0.972 28 H 0.266 0.734 29 H 0.135 0.865 30 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.654 -6.595 -10.148 15.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.112 5.112 2 C -0.050 4.050 3 C -0.072 4.072 4 C -0.068 4.068 5 C -0.147 4.147 6 C 0.115 3.885 7 N -0.341 5.341 8 C 0.389 3.611 9 O -0.456 6.456 10 N -0.370 5.370 11 C 0.144 3.856 12 C -0.583 4.583 13 H 0.082 0.918 14 C -0.140 4.140 15 N -0.521 5.521 16 Si 0.732 3.268 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.181 4.181 21 C -0.069 4.069 22 H 0.151 0.849 23 H 0.172 0.828 24 H 0.242 0.758 25 H 0.222 0.778 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.076 0.924 29 H 0.152 0.848 30 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.732 -5.996 -9.046 15.982 hybrid contribution 1.995 -0.287 -0.827 2.178 sum -9.737 -6.283 -9.873 15.224 Atomic orbital electron populations 1.81232 1.12206 1.10073 1.07664 1.25763 0.92673 0.93101 0.93436 1.15976 0.84112 1.12041 0.95112 1.21070 0.93748 0.95490 0.96520 1.21413 0.93320 1.00871 0.99130 1.17820 0.82489 0.94196 0.93955 1.42860 1.04324 1.58452 1.28499 1.16174 0.83056 0.79518 0.82319 1.90892 1.67612 1.53073 1.34037 1.45813 1.03209 1.60445 1.27509 1.19096 0.89727 0.92668 0.84107 1.21225 0.90509 1.38867 1.07720 0.91796 1.24944 0.99595 0.94709 0.94718 1.69977 1.35109 1.36284 1.10729 0.86341 0.84165 0.77921 0.78358 1.19641 1.20764 1.20755 1.20795 0.93819 1.06293 0.97184 1.20833 0.93347 0.96212 0.96513 0.84893 0.82787 0.75780 0.77764 0.95370 0.95361 0.92389 0.84762 0.84968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.96 18.54 41.84 0.78 -5.19 16 2 C 0.26 3.07 15.33 -22.47 -0.34 2.72 16 3 C -0.07 -0.69 5.74 -106.82 -0.61 -1.31 16 4 C -0.05 -0.51 9.75 -39.21 -0.38 -0.89 16 5 C -0.13 -1.65 8.67 -39.46 -0.34 -1.99 16 6 C 0.21 2.58 6.30 -83.70 -0.53 2.06 16 7 N -0.69 -8.81 5.32 -14.21 -0.08 -8.88 16 8 C 0.69 12.47 8.40 -86.92 -0.73 11.73 16 9 O -0.58 -12.69 13.76 5.29 0.07 -12.61 16 10 N -0.72 -13.70 5.55 -66.42 -0.37 -14.07 16 11 C 0.26 6.59 5.43 -5.19 -0.03 6.56 16 12 C -0.54 -14.02 9.28 -34.44 -0.32 -14.34 16 13 H 0.06 1.53 7.60 -52.49 -0.40 1.13 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 15 N -0.88 -25.13 13.29 55.43 0.74 -24.39 16 16 Si 0.90 20.07 29.54 -169.99 -5.02 15.04 16 17 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 C -0.16 -1.46 9.94 -39.46 -0.39 -1.85 16 21 C -0.05 -0.42 9.75 -39.21 -0.38 -0.80 16 22 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 23 H 0.15 2.36 6.20 -52.49 -0.33 2.03 16 24 H 0.41 3.66 8.83 -40.82 -0.36 3.30 16 25 H 0.39 6.16 8.34 -40.82 -0.34 5.82 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.13 0.89 8.06 -52.48 -0.42 0.46 16 30 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 281.09 15.07 4.24 4.24 Total: -1.00 -31.50 281.09 -6.48 -37.98 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -2.67 Total: 4.37 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: -4.16 Total: 3.52 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: 1.07 Total: -52.53 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.07 Total: -12.61 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.50 -6.48 -37.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048331363.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.653 kcal (2) G-P(sol) polarization free energy of solvation -31.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds