Wall clock time and date at job start Sun Mar 29 2020 22:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86801 * 119.99675 * 2 1 4 4 H 1.48500 * 109.47506 * 270.00283 * 3 2 1 5 5 H 1.48498 * 109.47217 * 30.00678 * 3 2 1 6 6 H 1.48502 * 109.46767 * 150.00423 * 3 2 1 7 7 C 1.38796 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99554 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00095 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99730 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46903 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72354 * 11 10 9 14 14 C 1.47021 * 125.64880 * 359.97385 * 13 11 10 15 15 C 1.54315 * 107.27662 * 180.96527 * 14 13 11 16 16 C 1.55159 * 102.86487 * 22.52300 * 15 14 13 17 17 H 1.09007 * 111.03466 * 82.38928 * 16 15 14 18 18 C 1.52995 * 111.00612 * 206.22977 * 16 15 14 19 19 O 1.42900 * 109.47148 * 178.64943 * 18 16 15 20 20 C 1.47428 * 125.65051 * 180.27344 * 13 11 10 21 21 H 0.97002 * 120.00288 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.47193 * 60.00140 * 10 9 7 23 23 H 1.08994 * 109.47534 * 299.99814 * 10 9 7 24 24 H 1.08998 * 109.88109 * 300.51046 * 14 13 11 25 25 H 1.09001 * 109.88624 * 61.67549 * 14 13 11 26 26 H 1.09000 * 110.92562 * 264.10677 * 15 14 13 27 27 H 1.09001 * 110.74166 * 140.85700 * 15 14 13 28 28 H 1.09004 * 109.47054 * 298.64982 * 18 16 15 29 29 H 1.08997 * 109.46967 * 58.65065 * 18 16 15 30 30 H 0.96701 * 113.99763 * 179.97438 * 19 18 16 31 31 H 1.08994 * 110.37091 * 274.68026 * 20 13 11 32 32 H 1.08997 * 110.36285 * 37.00078 * 20 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8913 -0.0021 11 6 1.9875 -5.3026 -0.0017 12 8 0.7912 -5.5023 -0.0009 13 7 2.8442 -6.3430 -0.0084 14 6 4.3111 -6.2450 -0.0169 15 6 4.8665 -7.6844 -0.0472 16 6 3.6831 -8.4990 -0.6333 17 1 3.6654 -8.4355 -1.7214 18 6 3.7395 -9.9569 -0.1728 19 8 2.6200 -10.6681 -0.7047 20 6 2.4657 -7.7679 -0.0145 21 1 -0.4851 0.8400 0.0004 22 1 3.1252 -3.7316 0.8875 23 1 3.1238 -3.7309 -0.8925 24 1 4.6410 -5.6997 -0.9012 25 1 4.6540 -5.7363 0.8841 26 1 5.1113 -8.0284 0.9577 27 1 5.7385 -7.7481 -0.6981 28 1 4.6629 -10.4146 -0.5278 29 1 3.7103 -9.9953 0.9161 30 1 2.5913 -11.6013 -0.4531 31 1 2.2896 -8.1181 1.0025 32 1 1.5784 -7.9219 -0.6286 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051885109.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:16 Heat of formation + Delta-G solvation = -117.897408 kcal Electronic energy + Delta-G solvation = -15344.582268 eV Core-core repulsion = 12622.993657 eV Total energy + Delta-G solvation = -2721.588611 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.09712 -38.93686 -37.21251 -34.59993 -33.43747 -30.90101 -30.12441 -27.72890 -26.40986 -23.92364 -21.41630 -20.75553 -19.60885 -18.26300 -17.97907 -17.56207 -16.89556 -16.67293 -16.12736 -15.61774 -15.34905 -14.69124 -14.55030 -14.23649 -13.97513 -13.75572 -13.36900 -13.17121 -12.89252 -12.85494 -12.62351 -12.25893 -11.97551 -11.74036 -11.62188 -11.15168 -11.03775 -10.82947 -10.30740 -9.73584 -8.70813 -8.35577 -6.15380 1.22300 1.42799 1.44240 1.51606 1.56147 2.07356 2.26299 2.98521 3.12151 3.30316 3.57452 3.62937 3.84838 4.09081 4.19346 4.29498 4.40142 4.42454 4.45647 4.57713 4.68352 4.77997 4.85189 4.94354 5.07854 5.26286 5.36858 5.40237 6.18614 6.36182 6.97148 7.05021 7.06957 8.73957 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.057905 B = 0.004397 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.435541 B = 6366.501773 C = 6782.901802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 1.002 2.998 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.256 1.256 7 C -0.547 4.547 8 H 0.084 0.916 9 S -0.155 6.155 10 C -0.117 4.117 11 C 0.542 3.458 12 O -0.571 6.571 13 N -0.621 5.621 14 C 0.087 3.913 15 C -0.107 4.107 16 C -0.098 4.098 17 H 0.082 0.918 18 C 0.089 3.911 19 O -0.600 6.600 20 C 0.111 3.889 21 H 0.272 0.728 22 H 0.108 0.892 23 H 0.107 0.893 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.100 0.900 27 H 0.115 0.885 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.399 0.601 31 H 0.069 0.931 32 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.966 -18.833 0.639 24.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.823 3.177 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.180 1.180 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.072 5.928 10 C -0.268 4.268 11 C 0.330 3.670 12 O -0.450 6.450 13 N -0.355 5.355 14 C -0.035 4.035 15 C -0.145 4.145 16 C -0.117 4.117 17 H 0.101 0.899 18 C 0.012 3.988 19 O -0.409 6.409 20 C -0.011 4.011 21 H 0.081 0.919 22 H 0.126 0.874 23 H 0.125 0.875 24 H 0.096 0.904 25 H 0.101 0.899 26 H 0.118 0.882 27 H 0.133 0.867 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.249 0.751 31 H 0.087 0.913 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.887 -18.400 0.400 23.055 hybrid contribution 1.171 0.770 0.184 1.414 sum 15.058 -17.629 0.584 23.192 Atomic orbital electron populations 1.70195 1.08075 1.28690 1.47896 1.26175 0.95986 1.03419 0.93588 0.84907 0.78196 0.75725 0.78849 1.19233 1.20245 1.18018 1.23194 0.95362 0.91753 1.59117 0.89790 1.85633 1.10649 0.99424 1.97054 1.23288 1.03366 0.93714 1.06454 1.19884 0.85486 0.86205 0.75428 1.90683 1.17267 1.85860 1.51197 1.48540 1.08229 1.05700 1.73071 1.22415 0.77619 1.00166 1.03287 1.22654 0.97211 0.90738 1.03873 1.22382 0.94041 0.94310 1.00951 0.89927 1.22149 0.89253 0.89709 0.97717 1.86484 1.48680 1.28405 1.77345 1.22294 0.98793 0.79251 1.00754 0.91937 0.87361 0.87489 0.90365 0.89892 0.88189 0.86700 0.90352 0.92021 0.75120 0.91258 0.93364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.95 13.22 21.65 0.29 -56.67 16 2 C 0.01 0.75 5.49 84.86 0.47 1.21 16 3 Si 1.00 43.93 29.55 68.60 2.03 45.95 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 7 C -0.55 -31.84 9.50 67.95 0.65 -31.19 16 8 H 0.08 4.52 7.80 -2.91 -0.02 4.49 16 9 S -0.15 -8.95 20.57 -56.49 -1.16 -10.12 16 10 C -0.12 -4.99 5.35 71.24 0.38 -4.61 16 11 C 0.54 22.59 7.87 87.66 0.69 23.28 16 12 O -0.57 -29.48 16.12 -3.04 -0.05 -29.53 16 13 N -0.62 -18.82 3.33 -811.82 -2.70 -21.52 16 14 C 0.09 1.67 6.48 86.73 0.56 2.23 16 15 C -0.11 -1.21 6.42 31.78 0.20 -1.01 16 16 C -0.10 -1.63 3.32 -9.40 -0.03 -1.66 16 17 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 18 C 0.09 1.04 6.49 71.98 0.47 1.51 16 19 O -0.60 -9.54 13.51 -148.98 -2.01 -11.55 16 20 C 0.11 2.96 6.24 86.85 0.54 3.51 16 21 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 22 H 0.11 4.15 8.14 -2.39 -0.02 4.13 16 23 H 0.11 4.13 8.14 -2.40 -0.02 4.11 16 24 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16 26 H 0.10 0.79 8.04 -2.39 -0.02 0.77 16 27 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.06 0.58 8.10 -2.39 -0.02 0.56 16 30 H 0.40 2.42 9.12 -74.06 -0.68 1.74 16 31 H 0.07 1.76 8.00 -2.39 -0.02 1.74 16 32 H 0.05 1.59 8.04 -2.39 -0.02 1.57 16 Total: -1.00 -82.74 289.19 0.75 -81.99 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: 0.44 Total: 8.17 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: 3.93 Total: -6.72 kcal Atomic # 7 Polarization: -75.77 SS G_CDS: -2.41 Total: -78.18 kcal Atomic # 8 Polarization: -39.02 SS G_CDS: -2.06 Total: -41.08 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -8.95 SS G_CDS: -1.16 Total: -10.12 kcal Total: -82.74 0.75 -81.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051885109.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.911 kcal (2) G-P(sol) polarization free energy of solvation -82.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds