Wall clock time and date at job start Sun Mar 29 2020 23:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35900 * 117.00098 * 2 1 4 4 C 1.38857 * 119.98980 * 0.02562 * 3 2 1 5 5 C 1.38239 * 120.23588 * 179.97438 * 4 3 2 6 6 C 1.38015 * 120.19641 * 359.97438 * 5 4 3 7 7 C 1.39542 * 119.97141 * 0.02562 * 6 5 4 8 8 C 1.47941 * 120.11460 * 179.97438 * 7 6 5 9 9 N 1.31737 * 126.26227 * 180.02562 * 8 7 6 10 10 C 1.34841 * 107.26187 * 179.97438 * 9 8 7 11 11 C 1.41382 * 125.97043 * 179.97438 * 10 9 8 12 12 H 1.07992 * 120.00323 * 354.28620 * 11 10 9 13 13 C 1.39836 * 119.99261 * 174.28007 * 11 10 9 14 14 N 1.30875 * 120.00525 * 6.02907 * 13 11 10 15 15 Si 1.86800 * 119.99543 * 186.03081 * 13 11 10 16 16 H 1.48504 * 109.47380 * 94.98117 * 15 13 11 17 17 H 1.48501 * 109.47304 * 214.98075 * 15 13 11 18 18 H 1.48501 * 109.47548 * 334.98120 * 15 13 11 19 19 N 1.32677 * 108.05222 * 0.02562 * 10 9 8 20 20 N 1.28854 * 108.80414 * 359.73939 * 19 10 9 21 21 H 0.96997 * 125.80011 * 180.24503 * 20 19 10 22 22 C 1.38461 * 119.98797 * 179.97438 * 3 2 1 23 23 H 1.08996 * 109.47087 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46837 * 299.99861 * 1 2 3 25 25 H 1.09002 * 109.46709 * 59.99857 * 1 2 3 26 26 H 1.08004 * 119.88375 * 359.96800 * 4 3 2 27 27 H 1.07997 * 119.90635 * 180.02562 * 5 4 3 28 28 H 1.07998 * 120.01557 * 180.27675 * 6 5 4 29 29 H 0.96996 * 120.00447 * 180.02562 * 14 13 11 30 30 H 1.08005 * 120.09715 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2896 2.3753 0.0005 5 6 1.9119 3.6097 0.0011 6 6 3.2896 3.6925 0.0016 7 6 4.0580 2.5278 0.0011 8 6 5.5349 2.6129 0.0011 9 7 6.3740 1.5972 0.0001 10 6 7.6215 2.1089 -0.0001 11 6 8.8240 1.3653 -0.0005 12 1 8.7939 0.2898 0.0924 13 6 10.0523 2.0226 -0.1213 14 7 10.0981 3.3306 -0.1153 15 14 11.6280 1.0338 -0.2914 16 1 11.9670 0.8863 -1.7297 17 1 12.7325 1.7383 0.4077 18 1 11.4371 -0.3095 0.3123 19 7 7.5233 3.4320 0.0014 20 7 6.2761 3.7559 -0.0032 21 1 5.9247 4.6600 -0.0067 22 6 3.4288 1.2830 0.0005 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.2111 2.3164 0.0004 27 1 1.3184 4.5119 0.0019 28 1 3.7727 4.6584 0.0065 29 1 10.9500 3.7865 -0.1995 30 1 4.0183 0.3781 0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053994820.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:42:26 Heat of formation + Delta-G solvation = 66.598852 kcal Electronic energy + Delta-G solvation = -16429.432061 eV Core-core repulsion = 13612.692609 eV Total energy + Delta-G solvation = -2816.739453 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.19428 -39.86565 -37.25249 -33.46869 -31.98368 -31.30695 -30.33498 -28.35992 -27.24998 -25.86866 -22.94594 -22.34305 -20.53436 -19.91076 -18.26166 -16.60518 -16.47692 -15.94881 -15.72405 -15.68482 -14.71188 -14.33037 -14.16792 -13.51617 -13.31341 -12.82629 -12.60427 -12.10578 -11.69180 -11.19816 -11.17851 -11.09574 -10.77859 -10.49829 -10.15865 -10.00788 -9.47644 -9.35554 -8.52469 -8.41434 -8.15751 -7.41080 -6.38799 -4.31666 1.22095 1.58036 3.15318 3.24299 3.26210 3.29401 3.29913 4.10992 4.15515 4.18632 4.45298 4.82004 4.89632 5.03188 5.05028 5.16258 5.33580 5.36567 5.62546 5.64010 5.70827 6.06065 6.37830 6.42864 6.51202 6.73283 6.91504 7.10736 7.47786 7.48414 8.20322 8.24509 8.62357 8.89525 9.14129 10.20416 10.61671 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.044241 B = 0.004887 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.741929 B = 5728.259982 C = 6342.783631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.316 6.316 3 C 0.126 3.874 4 C -0.216 4.216 5 C -0.078 4.078 6 C -0.156 4.156 7 C 0.057 3.943 8 C 0.188 3.812 9 N -0.528 5.528 10 C 0.321 3.679 11 C -0.437 4.437 12 H 0.087 0.913 13 C 0.073 3.927 14 N -0.782 5.782 15 Si 0.916 3.084 16 H -0.273 1.273 17 H -0.280 1.280 18 H -0.263 1.263 19 N -0.329 5.329 20 N -0.431 5.431 21 H 0.422 0.578 22 C -0.117 4.117 23 H 0.097 0.903 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.125 0.875 27 H 0.125 0.875 28 H 0.120 0.880 29 H 0.271 0.729 30 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.384 0.255 -0.032 16.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.229 6.229 3 C 0.081 3.919 4 C -0.236 4.236 5 C -0.096 4.096 6 C -0.176 4.176 7 C 0.053 3.947 8 C -0.084 4.084 9 N -0.259 5.259 10 C 0.061 3.939 11 C -0.479 4.479 12 H 0.105 0.895 13 C -0.146 4.146 14 N -0.411 5.411 15 Si 0.741 3.259 16 H -0.199 1.199 17 H -0.206 1.206 18 H -0.187 1.187 19 N -0.167 5.167 20 N -0.151 5.151 21 H 0.263 0.737 22 C -0.138 4.138 23 H 0.115 0.885 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.143 0.857 27 H 0.143 0.857 28 H 0.138 0.862 29 H 0.081 0.919 30 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -15.593 0.200 -0.032 15.594 hybrid contribution 0.073 0.461 -0.112 0.480 sum -15.521 0.662 -0.144 15.535 Atomic orbital electron populations 1.23014 0.78829 1.03671 1.01127 1.86100 1.20972 1.26978 1.88887 1.18859 0.92020 0.84063 0.96936 1.21183 0.99672 0.92382 1.10348 1.20682 0.93961 0.96881 0.98101 1.20969 0.93848 0.97327 1.05472 1.17433 0.87751 0.92701 0.96768 1.22502 0.92215 0.85092 1.08636 1.71535 1.01157 1.28188 1.25018 1.20921 0.90667 0.86042 0.96242 1.18243 0.86667 0.94106 1.48907 0.89457 1.25727 1.00409 0.94961 0.93488 1.69961 1.26700 1.08068 1.36382 0.86183 0.80552 0.80387 0.78769 1.19869 1.20579 1.18719 1.75457 0.93721 1.16725 1.30776 1.45381 1.05301 1.08051 1.56413 0.73694 1.20467 0.90874 0.98666 1.03789 0.88457 0.92823 0.92817 0.85738 0.85725 0.86219 0.91886 0.83738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.34 10.49 -19.43 -0.20 -4.55 16 3 C 0.13 1.88 6.68 -39.27 -0.26 1.62 16 4 C -0.22 -2.67 9.03 -39.35 -0.36 -3.02 16 5 C -0.08 -0.95 10.03 -39.66 -0.40 -1.35 16 6 C -0.16 -2.28 9.70 -39.18 -0.38 -2.66 16 7 C 0.06 1.05 5.87 -104.98 -0.62 0.43 16 8 C 0.19 4.35 7.83 -154.58 -1.21 3.14 16 9 N -0.53 -14.32 11.11 -10.34 -0.11 -14.44 16 10 C 0.32 9.47 7.61 -157.83 -1.20 8.26 16 11 C -0.44 -12.81 9.49 -37.79 -0.36 -13.16 16 12 H 0.09 2.47 7.85 -52.49 -0.41 2.06 16 13 C 0.07 2.02 5.49 -17.36 -0.10 1.92 16 14 N -0.78 -22.22 11.95 55.54 0.66 -21.56 16 15 Si 0.92 20.25 29.56 -169.99 -5.03 15.22 16 16 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 17 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 18 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 19 N -0.33 -9.28 10.53 30.85 0.32 -8.96 16 20 N -0.43 -9.91 6.89 32.41 0.22 -9.69 16 21 H 0.42 7.69 8.08 -190.21 -1.54 6.15 16 22 C -0.12 -2.09 9.63 -39.04 -0.38 -2.46 16 23 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 25 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 26 H 0.12 1.16 6.28 -52.48 -0.33 0.83 16 27 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 28 H 0.12 1.51 7.18 -52.49 -0.38 1.13 16 29 H 0.27 7.02 8.30 -40.82 -0.34 6.68 16 30 H 0.14 2.80 7.86 -52.48 -0.41 2.39 16 LS Contribution 270.11 15.07 4.07 4.07 Total: -1.00 -34.11 270.11 -8.17 -42.28 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -3.84 Total: 3.66 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -4.26 Total: -6.05 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: 1.10 Total: -54.64 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -0.20 Total: -4.55 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.03 Total: 15.22 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -34.11 -8.17 -42.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053994820.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.875 kcal (2) G-P(sol) polarization free energy of solvation -34.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds