Wall clock time and date at job start Sun Mar 29 2020 23:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35900 * 117.00098 * 2 1 4 4 C 1.38857 * 119.98980 * 0.02562 * 3 2 1 5 5 C 1.38239 * 120.23588 * 179.97438 * 4 3 2 6 6 C 1.38015 * 120.19641 * 359.97438 * 5 4 3 7 7 C 1.39542 * 119.97141 * 0.02562 * 6 5 4 8 8 C 1.47941 * 120.11460 * 179.97438 * 7 6 5 9 9 N 1.31737 * 126.26227 * 180.02562 * 8 7 6 10 10 C 1.34841 * 107.26187 * 179.97438 * 9 8 7 11 11 C 1.41382 * 125.97043 * 179.97438 * 10 9 8 12 12 H 1.07992 * 120.00323 * 354.28620 * 11 10 9 13 13 C 1.39836 * 119.99261 * 174.28007 * 11 10 9 14 14 N 1.30875 * 120.00525 * 6.02907 * 13 11 10 15 15 Si 1.86800 * 119.99543 * 186.03081 * 13 11 10 16 16 H 1.48504 * 109.47380 * 94.98117 * 15 13 11 17 17 H 1.48501 * 109.47304 * 214.98075 * 15 13 11 18 18 H 1.48501 * 109.47548 * 334.98120 * 15 13 11 19 19 N 1.32677 * 108.05222 * 0.02562 * 10 9 8 20 20 N 1.28854 * 108.80414 * 359.73939 * 19 10 9 21 21 H 0.96997 * 125.80011 * 180.24503 * 20 19 10 22 22 C 1.38461 * 119.98797 * 179.97438 * 3 2 1 23 23 H 1.08996 * 109.47087 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46837 * 299.99861 * 1 2 3 25 25 H 1.09002 * 109.46709 * 59.99857 * 1 2 3 26 26 H 1.08004 * 119.88375 * 359.96800 * 4 3 2 27 27 H 1.07997 * 119.90635 * 180.02562 * 5 4 3 28 28 H 1.07998 * 120.01557 * 180.27675 * 6 5 4 29 29 H 0.96996 * 120.00447 * 180.02562 * 14 13 11 30 30 H 1.08005 * 120.09715 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2896 2.3753 0.0005 5 6 1.9119 3.6097 0.0011 6 6 3.2896 3.6925 0.0016 7 6 4.0580 2.5278 0.0011 8 6 5.5349 2.6129 0.0011 9 7 6.3740 1.5972 0.0001 10 6 7.6215 2.1089 -0.0001 11 6 8.8240 1.3653 -0.0005 12 1 8.7939 0.2898 0.0924 13 6 10.0523 2.0226 -0.1213 14 7 10.0981 3.3306 -0.1153 15 14 11.6280 1.0338 -0.2914 16 1 11.9670 0.8863 -1.7297 17 1 12.7325 1.7383 0.4077 18 1 11.4371 -0.3095 0.3123 19 7 7.5233 3.4320 0.0014 20 7 6.2761 3.7559 -0.0032 21 1 5.9247 4.6600 -0.0067 22 6 3.4288 1.2830 0.0005 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.2111 2.3164 0.0004 27 1 1.3184 4.5119 0.0019 28 1 3.7727 4.6584 0.0065 29 1 10.9500 3.7865 -0.1995 30 1 4.0183 0.3781 0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053994820.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:42:26 Heat of formation + Delta-G solvation = 42.846216 kcal Electronic energy + Delta-G solvation = -16430.462053 eV Core-core repulsion = 13612.692609 eV Total energy + Delta-G solvation = -2817.769444 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.11451 -40.95491 -38.36215 -35.51563 -33.73163 -32.95907 -31.50735 -30.05801 -28.06706 -27.90046 -24.40451 -23.61978 -22.30987 -21.59429 -19.66132 -18.59609 -18.01950 -17.06500 -16.78864 -16.63071 -16.52932 -16.22936 -15.67210 -14.87159 -14.46544 -14.42894 -13.67167 -13.19510 -12.96090 -12.88939 -12.77307 -12.61256 -12.08215 -12.03708 -11.89025 -11.79931 -11.40043 -11.01324 -10.45447 -10.28744 -9.40344 -9.08377 -8.43655 -6.48009 -0.06526 0.45002 1.39357 1.43078 1.59354 1.66314 2.22109 2.30520 2.32329 2.61263 2.89104 3.46001 3.50220 3.87377 4.06391 4.22058 4.31145 4.40904 4.47356 4.53024 4.72895 4.78426 4.96626 5.09047 5.27816 5.38566 5.40814 5.54837 5.71361 6.21829 6.25115 6.47909 6.67343 6.83503 7.05136 8.19704 8.59048 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.044241 B = 0.004887 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.741929 B = 5728.259982 C = 6342.783631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.341 6.341 3 C 0.123 3.877 4 C -0.193 4.193 5 C -0.064 4.064 6 C -0.149 4.149 7 C 0.019 3.981 8 C 0.212 3.788 9 N -0.571 5.571 10 C 0.289 3.711 11 C -0.478 4.478 12 H 0.080 0.920 13 C 0.029 3.971 14 N -0.816 5.816 15 Si 0.999 3.001 16 H -0.264 1.264 17 H -0.266 1.266 18 H -0.259 1.259 19 N -0.366 5.366 20 N -0.426 5.426 21 H 0.441 0.559 22 C -0.142 4.142 23 H 0.115 0.885 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.167 0.833 27 H 0.173 0.827 28 H 0.140 0.860 29 H 0.279 0.721 30 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.988 1.181 -0.154 19.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.255 6.255 3 C 0.077 3.923 4 C -0.212 4.212 5 C -0.082 4.082 6 C -0.170 4.170 7 C 0.016 3.984 8 C -0.062 4.062 9 N -0.302 5.302 10 C 0.028 3.972 11 C -0.520 4.520 12 H 0.098 0.902 13 C -0.187 4.187 14 N -0.445 5.445 15 Si 0.819 3.181 16 H -0.189 1.189 17 H -0.190 1.190 18 H -0.183 1.183 19 N -0.204 5.204 20 N -0.147 5.147 21 H 0.286 0.714 22 C -0.163 4.163 23 H 0.134 0.866 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.185 0.815 27 H 0.191 0.809 28 H 0.157 0.843 29 H 0.089 0.911 30 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -18.241 1.162 -0.152 18.278 hybrid contribution 0.508 0.178 -0.064 0.542 sum -17.732 1.340 -0.216 17.784 Atomic orbital electron populations 1.23411 0.75910 1.05666 1.02751 1.86081 1.23983 1.26733 1.88682 1.18861 0.91009 0.85699 0.96687 1.21693 1.01626 0.91155 1.06763 1.21218 0.92895 0.98654 0.95411 1.21263 0.95078 0.96533 1.04078 1.17468 0.85208 0.94675 1.01081 1.23209 0.94117 0.84075 1.04806 1.71494 1.01147 1.30144 1.27447 1.21291 0.91697 0.86939 0.97228 1.18578 0.88181 0.94132 1.51114 0.90169 1.26726 1.03659 0.96159 0.92199 1.70051 1.28167 1.09799 1.36451 0.84957 0.75395 0.78597 0.79151 1.18904 1.19001 1.18286 1.75276 0.96153 1.16352 1.32585 1.45180 1.04133 1.09140 1.56283 0.71386 1.20323 0.92643 0.97407 1.05933 0.86646 0.91056 0.91051 0.81518 0.80937 0.84256 0.91094 0.87107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.34 16 2 O -0.34 -8.85 10.49 -92.43 -0.97 -9.82 16 3 C 0.12 3.46 6.68 22.47 0.15 3.61 16 4 C -0.19 -3.86 9.03 22.42 0.20 -3.66 16 5 C -0.06 -1.23 10.03 22.22 0.22 -1.01 16 6 C -0.15 -3.97 9.70 22.53 0.22 -3.75 16 7 C 0.02 0.69 5.87 -20.09 -0.12 0.57 16 8 C 0.21 10.20 7.83 136.54 1.07 11.27 16 9 N -0.57 -33.00 11.11 -186.63 -2.07 -35.07 16 10 C 0.29 18.08 7.61 134.90 1.03 19.11 16 11 C -0.48 -29.57 9.49 23.43 0.22 -29.35 16 12 H 0.08 4.83 7.85 -2.91 -0.02 4.81 16 13 C 0.03 1.61 5.49 85.22 0.47 2.08 16 14 N -0.82 -47.69 11.95 21.81 0.26 -47.43 16 15 Si 1.00 42.46 29.56 68.60 2.03 44.48 16 16 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 17 H -0.27 -10.55 7.11 99.48 0.71 -9.85 16 18 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 19 N -0.37 -21.59 10.53 -56.33 -0.59 -22.18 16 20 N -0.43 -20.20 6.89 -51.38 -0.35 -20.56 16 21 H 0.44 16.22 8.08 -219.80 -1.78 14.44 16 22 C -0.14 -5.21 9.63 22.62 0.22 -4.99 16 23 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16 25 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16 26 H 0.17 1.97 6.28 -2.91 -0.02 1.95 16 27 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16 28 H 0.14 3.08 7.18 -2.91 -0.02 3.06 16 29 H 0.28 14.72 8.30 -92.71 -0.77 13.95 16 30 H 0.11 4.70 7.86 -2.91 -0.02 4.68 16 Total: -1.00 -80.56 270.11 2.50 -78.05 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -0.59 Total: 17.30 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: 4.79 Total: -4.78 kcal Atomic # 7 Polarization: -122.48 SS G_CDS: -2.76 Total: -125.24 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -0.97 Total: -9.82 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -80.56 2.50 -78.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053994820.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.901 kcal (2) G-P(sol) polarization free energy of solvation -80.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds