Wall clock time and date at job start Sun Mar 29 2020 23:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35839 * 116.99837 * 2 1 4 4 C 1.38883 * 119.93048 * 179.97438 * 3 2 1 5 5 C 1.37866 * 120.06942 * 179.97438 * 4 3 2 6 6 C 1.39443 * 119.92844 * 359.97438 * 5 4 3 7 7 C 1.48283 * 120.06269 * 179.97438 * 6 5 4 8 8 N 1.32096 * 125.68407 * 359.97431 * 7 6 5 9 9 N 1.28850 * 109.19910 * 179.73570 * 8 7 6 10 10 H 0.96998 * 125.99124 * 180.26291 * 9 8 7 11 11 C 1.36975 * 108.02627 * 0.45011 * 9 8 7 12 12 C 1.40311 * 126.54688 * 179.81904 * 11 9 8 13 13 H 1.08002 * 120.00428 * 359.71541 * 12 11 9 14 14 C 1.40212 * 119.99859 * 179.43249 * 12 11 9 15 15 N 1.30674 * 120.00032 * 0.27993 * 14 12 11 16 16 Si 1.86798 * 120.00299 * 180.27812 * 14 12 11 17 17 H 1.48506 * 109.46985 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47563 * 120.00199 * 16 14 12 19 19 H 1.48506 * 109.47035 * 240.00439 * 16 14 12 20 20 N 1.33332 * 106.89860 * 359.55496 * 11 9 8 21 21 C 1.39442 * 119.86912 * 0.25389 * 6 5 4 22 22 C 1.37872 * 119.92602 * 359.49685 * 21 6 5 23 23 H 1.08990 * 109.47286 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47047 * 300.00896 * 1 2 3 25 25 H 1.09006 * 109.46560 * 60.00273 * 1 2 3 26 26 H 1.08000 * 119.96379 * 359.95097 * 4 3 2 27 27 H 1.07996 * 120.02952 * 180.02562 * 5 4 3 28 28 H 0.97005 * 120.00029 * 179.97438 * 15 14 12 29 29 H 1.08000 * 120.03505 * 179.74257 * 21 6 5 30 30 H 1.07998 * 119.96048 * 180.22972 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 6 3.4327 1.2814 0.0005 5 6 4.0616 2.5083 0.0000 6 6 3.3034 3.6786 -0.0016 7 6 3.9767 4.9998 -0.0016 8 7 5.2825 5.1992 0.0003 9 7 5.5178 6.4660 -0.0060 10 1 6.3934 6.8832 -0.0098 11 6 4.3145 7.1206 -0.0020 12 6 4.1192 8.5100 -0.0029 13 1 4.9702 9.1750 -0.0023 14 6 2.8192 9.0352 -0.0104 15 7 1.7895 8.2307 -0.0111 16 14 2.5591 10.8850 -0.0194 17 1 3.8767 11.5701 -0.0163 18 1 1.8019 11.2725 -1.2366 19 1 1.7921 11.2828 1.1884 20 7 3.3644 6.1851 -0.0031 21 6 1.9110 3.6041 0.0027 22 6 1.2881 2.3741 -0.0020 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 4.0193 0.3746 0.0018 27 1 5.1402 2.5628 0.0000 28 1 0.8901 8.5940 -0.0159 29 1 1.3212 4.5088 0.0056 30 1 0.2097 2.3158 -0.0024 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053994821.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:42:23 Heat of formation + Delta-G solvation = 59.310308 kcal Electronic energy + Delta-G solvation = -16510.123432 eV Core-core repulsion = 13693.067925 eV Total energy + Delta-G solvation = -2817.055508 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.93775 -39.63414 -36.97315 -33.68081 -31.77987 -30.65416 -30.17512 -28.76615 -27.06609 -25.70554 -22.52180 -22.12322 -20.53551 -19.49254 -17.80927 -17.49648 -16.22646 -15.68024 -15.54501 -14.97626 -14.64695 -14.12541 -13.85401 -13.38090 -13.11947 -12.73860 -12.34961 -11.84388 -11.73092 -11.43463 -11.32222 -10.92067 -10.80214 -10.44636 -10.26338 -9.89749 -9.55408 -8.90918 -8.53619 -8.09273 -8.07719 -7.15408 -6.60267 -4.62847 1.71443 1.87027 2.95685 3.08635 3.12428 3.49224 3.56898 3.91407 4.12924 4.55033 4.82420 5.08846 5.21799 5.25825 5.36785 5.42712 5.44457 5.50417 5.80772 5.99429 6.08160 6.39204 6.64632 6.70773 6.81698 7.11389 7.17312 7.33332 7.48390 7.71122 8.04792 8.25349 8.50501 8.76882 9.08720 10.22711 10.35543 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.035789 B = 0.005374 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.176822 B = 5208.986483 C = 5976.011725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.323 6.323 3 C 0.110 3.890 4 C -0.158 4.158 5 C -0.064 4.064 6 C -0.003 4.003 7 C 0.199 3.801 8 N -0.392 5.392 9 N -0.486 5.486 10 H 0.422 0.578 11 C 0.361 3.639 12 C -0.457 4.457 13 H 0.085 0.915 14 C 0.083 3.917 15 N -0.736 5.736 16 Si 0.916 3.084 17 H -0.262 1.262 18 H -0.273 1.273 19 H -0.273 1.273 20 N -0.520 5.520 21 C -0.047 4.047 22 C -0.211 4.211 23 H 0.094 0.906 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.126 0.874 27 H 0.133 0.867 28 H 0.275 0.725 29 H 0.142 0.858 30 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.587 -7.949 -0.004 8.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.237 6.237 3 C 0.065 3.935 4 C -0.177 4.177 5 C -0.084 4.084 6 C -0.006 4.006 7 C -0.079 4.079 8 N -0.231 5.231 9 N -0.205 5.205 10 H 0.264 0.736 11 C 0.109 3.891 12 C -0.499 4.499 13 H 0.103 0.897 14 C -0.142 4.142 15 N -0.361 5.361 16 Si 0.740 3.260 17 H -0.186 1.186 18 H -0.199 1.199 19 H -0.199 1.199 20 N -0.252 5.252 21 C -0.067 4.067 22 C -0.230 4.230 23 H 0.112 0.888 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.144 0.856 27 H 0.151 0.849 28 H 0.086 0.914 29 H 0.159 0.841 30 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.693 -8.715 -0.004 9.122 hybrid contribution 0.156 1.566 -0.007 1.574 sum -2.537 -7.149 -0.011 7.585 Atomic orbital electron populations 1.22977 0.79015 1.03232 1.01412 1.85994 1.20921 1.27530 1.89274 1.19062 0.92314 0.83779 0.98321 1.20207 0.91055 0.98145 1.08245 1.21005 1.00207 0.90345 0.96891 1.17565 0.92171 0.88968 1.01881 1.21958 0.87293 0.93616 1.04983 1.73792 1.18394 0.99274 1.31608 1.44913 1.09269 1.03307 1.63039 0.73629 1.21518 0.79174 0.94770 0.93658 1.18270 0.93822 0.87270 1.50540 0.89662 1.25746 0.95341 1.00069 0.93091 1.69977 0.99114 1.36067 1.30925 0.86143 0.79349 0.81957 0.78507 1.18594 1.19873 1.19873 1.72231 1.27599 0.95366 1.30041 1.21155 0.93913 0.97398 0.94239 1.21110 0.99604 0.92122 1.10157 0.88806 0.92788 0.92780 0.85648 0.84935 0.91373 0.84057 0.85774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.68 10.49 -19.24 -0.20 -4.88 16 3 C 0.11 1.81 6.69 -39.11 -0.26 1.55 16 4 C -0.16 -2.63 9.97 -39.48 -0.39 -3.02 16 5 C -0.06 -1.21 9.68 -39.27 -0.38 -1.59 16 6 C 0.00 -0.07 5.88 -104.87 -0.62 -0.69 16 7 C 0.20 5.15 7.75 -156.67 -1.21 3.93 16 8 N -0.39 -9.78 11.91 32.07 0.38 -9.40 16 9 N -0.49 -11.73 7.07 31.13 0.22 -11.51 16 10 H 0.42 8.44 8.96 -190.21 -1.71 6.74 16 11 C 0.36 9.81 7.70 -155.71 -1.20 8.61 16 12 C -0.46 -11.85 9.47 -38.06 -0.36 -12.21 16 13 H 0.09 2.00 7.85 -52.49 -0.41 1.59 16 14 C 0.08 2.08 5.50 -17.30 -0.10 1.98 16 15 N -0.74 -19.52 11.94 55.56 0.66 -18.85 16 16 Si 0.92 18.21 29.56 -169.99 -5.03 13.19 16 17 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 18 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 19 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 20 N -0.52 -14.66 9.26 -10.44 -0.10 -14.75 16 21 C -0.05 -0.95 9.68 -39.27 -0.38 -1.33 16 22 C -0.21 -3.54 9.02 -39.48 -0.36 -3.90 16 23 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 25 H 0.05 0.52 7.65 -51.93 -0.40 0.12 16 26 H 0.13 1.78 8.06 -52.49 -0.42 1.35 16 27 H 0.13 2.42 7.83 -52.49 -0.41 2.01 16 28 H 0.28 6.58 8.29 -40.82 -0.34 6.24 16 29 H 0.14 3.06 7.83 -52.49 -0.41 2.65 16 30 H 0.12 1.73 6.28 -52.49 -0.33 1.40 16 LS Contribution 271.25 15.07 4.09 4.09 Total: -1.00 -31.31 271.25 -8.28 -39.59 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -4.04 Total: 7.89 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -4.26 Total: -5.37 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: 1.17 Total: -54.52 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.20 Total: -4.88 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.19 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.31 -8.28 -39.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053994821.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.900 kcal (2) G-P(sol) polarization free energy of solvation -31.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds