Wall clock time and date at job start Sun Mar 29 2020 23:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35839 * 116.99837 * 2 1 4 4 C 1.38883 * 119.93048 * 179.97438 * 3 2 1 5 5 C 1.37866 * 120.06942 * 179.97438 * 4 3 2 6 6 C 1.39443 * 119.92844 * 359.97438 * 5 4 3 7 7 C 1.48283 * 120.06269 * 179.97438 * 6 5 4 8 8 N 1.32096 * 125.68407 * 359.97431 * 7 6 5 9 9 N 1.28850 * 109.19910 * 179.73570 * 8 7 6 10 10 H 0.96998 * 125.99124 * 180.26291 * 9 8 7 11 11 C 1.36975 * 108.02627 * 0.45011 * 9 8 7 12 12 C 1.40311 * 126.54688 * 179.81904 * 11 9 8 13 13 H 1.08002 * 120.00428 * 359.71541 * 12 11 9 14 14 C 1.40212 * 119.99859 * 179.43249 * 12 11 9 15 15 N 1.30674 * 120.00032 * 0.27993 * 14 12 11 16 16 Si 1.86798 * 120.00299 * 180.27812 * 14 12 11 17 17 H 1.48506 * 109.46985 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47563 * 120.00199 * 16 14 12 19 19 H 1.48506 * 109.47035 * 240.00439 * 16 14 12 20 20 N 1.33332 * 106.89860 * 359.55496 * 11 9 8 21 21 C 1.39442 * 119.86912 * 0.25389 * 6 5 4 22 22 C 1.37872 * 119.92602 * 359.49685 * 21 6 5 23 23 H 1.08990 * 109.47286 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47047 * 300.00896 * 1 2 3 25 25 H 1.09006 * 109.46560 * 60.00273 * 1 2 3 26 26 H 1.08000 * 119.96379 * 359.95097 * 4 3 2 27 27 H 1.07996 * 120.02952 * 180.02562 * 5 4 3 28 28 H 0.97005 * 120.00029 * 179.97438 * 15 14 12 29 29 H 1.08000 * 120.03505 * 179.74257 * 21 6 5 30 30 H 1.07998 * 119.96048 * 180.22972 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 6 3.4327 1.2814 0.0005 5 6 4.0616 2.5083 0.0000 6 6 3.3034 3.6786 -0.0016 7 6 3.9767 4.9998 -0.0016 8 7 5.2825 5.1992 0.0003 9 7 5.5178 6.4660 -0.0060 10 1 6.3934 6.8832 -0.0098 11 6 4.3145 7.1206 -0.0020 12 6 4.1192 8.5100 -0.0029 13 1 4.9702 9.1750 -0.0023 14 6 2.8192 9.0352 -0.0104 15 7 1.7895 8.2307 -0.0111 16 14 2.5591 10.8850 -0.0194 17 1 3.8767 11.5701 -0.0163 18 1 1.8019 11.2725 -1.2366 19 1 1.7921 11.2828 1.1884 20 7 3.3644 6.1851 -0.0031 21 6 1.9110 3.6041 0.0027 22 6 1.2881 2.3741 -0.0020 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 4.0193 0.3746 0.0018 27 1 5.1402 2.5628 0.0000 28 1 0.8901 8.5940 -0.0159 29 1 1.3212 4.5088 0.0056 30 1 0.2097 2.3158 -0.0024 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053994821.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:42:23 Heat of formation + Delta-G solvation = 39.391209 kcal Electronic energy + Delta-G solvation = -16510.987189 eV Core-core repulsion = 13693.067925 eV Total energy + Delta-G solvation = -2817.919264 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.86155 -40.91060 -38.29915 -35.59263 -33.57336 -32.19633 -31.91684 -30.35703 -28.11943 -27.61158 -24.07608 -23.60895 -22.40138 -21.17237 -19.45918 -19.00124 -18.10179 -17.07584 -16.58724 -16.48747 -16.30197 -16.06274 -15.27254 -14.94829 -14.50428 -14.19485 -13.62153 -13.53823 -13.15339 -12.93735 -12.72437 -12.54400 -12.11526 -12.07787 -11.76188 -11.69187 -11.38469 -10.68096 -10.09653 -9.99346 -9.93898 -8.74796 -8.47720 -6.61920 0.21752 0.44406 1.32622 1.45977 1.62358 1.78320 2.23887 2.40213 2.44829 2.76658 3.07777 3.46910 3.74129 3.90428 3.97756 4.27940 4.46197 4.49001 4.49960 4.65377 4.79113 4.82627 5.12591 5.16079 5.28006 5.36265 5.62681 5.76590 5.77451 6.14480 6.36431 6.47053 6.55326 6.82190 7.20541 8.28639 8.49830 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.035789 B = 0.005374 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.176822 B = 5208.986483 C = 5976.011725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.326 6.326 3 C 0.125 3.875 4 C -0.152 4.152 5 C -0.061 4.061 6 C -0.045 4.045 7 C 0.186 3.814 8 N -0.398 5.398 9 N -0.481 5.481 10 H 0.437 0.563 11 C 0.332 3.668 12 C -0.480 4.480 13 H 0.103 0.897 14 C 0.035 3.965 15 N -0.779 5.779 16 Si 1.002 2.998 17 H -0.250 1.250 18 H -0.268 1.268 19 H -0.268 1.268 20 N -0.557 5.557 21 C -0.059 4.059 22 C -0.203 4.203 23 H 0.125 0.875 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.156 0.844 27 H 0.134 0.866 28 H 0.283 0.717 29 H 0.115 0.885 30 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.280 -8.706 -0.010 9.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.240 6.240 3 C 0.079 3.921 4 C -0.171 4.171 5 C -0.082 4.082 6 C -0.048 4.048 7 C -0.092 4.092 8 N -0.236 5.236 9 N -0.202 5.202 10 H 0.282 0.718 11 C 0.080 3.920 12 C -0.522 4.522 13 H 0.121 0.879 14 C -0.187 4.187 15 N -0.404 5.404 16 Si 0.822 3.178 17 H -0.173 1.173 18 H -0.193 1.193 19 H -0.193 1.193 20 N -0.290 5.290 21 C -0.079 4.079 22 C -0.221 4.221 23 H 0.143 0.857 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.174 0.826 27 H 0.152 0.848 28 H 0.093 0.907 29 H 0.134 0.866 30 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -3.356 -9.499 -0.010 10.074 hybrid contribution 0.292 1.604 -0.005 1.631 sum -3.064 -7.894 -0.015 8.468 Atomic orbital electron populations 1.23372 0.76533 1.05699 1.02231 1.86015 1.23403 1.26003 1.88561 1.19144 0.92428 0.84417 0.96154 1.20474 0.91678 0.98157 1.06759 1.21008 1.00189 0.90255 0.96709 1.17737 0.93108 0.88391 1.05557 1.22696 0.87561 0.94671 1.04227 1.73724 1.18264 0.99563 1.32068 1.44859 1.09519 1.03006 1.62847 0.71838 1.21962 0.80054 0.95558 0.94414 1.18813 0.95274 0.87234 1.50873 0.87871 1.26859 0.94450 1.05566 0.91799 1.70099 0.99938 1.38867 1.31492 0.84867 0.79665 0.74728 0.78563 1.17267 1.19336 1.19334 1.72174 1.28971 0.96529 1.31362 1.20998 0.93254 0.97961 0.95696 1.21286 1.01126 0.90856 1.08855 0.85696 0.91943 0.91937 0.82649 0.84807 0.90703 0.86647 0.82839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.38 16 2 O -0.33 -8.27 10.49 -91.75 -0.96 -9.23 16 3 C 0.12 3.79 6.69 22.58 0.15 3.94 16 4 C -0.15 -4.75 9.97 22.34 0.22 -4.53 16 5 C -0.06 -2.31 9.68 22.47 0.22 -2.09 16 6 C -0.05 -2.05 5.88 -20.02 -0.12 -2.17 16 7 C 0.19 10.03 7.75 137.43 1.06 11.09 16 8 N -0.40 -20.45 11.91 -52.46 -0.62 -21.07 16 9 N -0.48 -23.88 7.07 -55.42 -0.39 -24.27 16 10 H 0.44 17.85 8.96 -219.80 -1.97 15.88 16 11 C 0.33 18.67 7.70 133.75 1.03 19.70 16 12 C -0.48 -25.30 9.47 23.25 0.22 -25.08 16 13 H 0.10 4.84 7.85 -2.91 -0.02 4.82 16 14 C 0.04 1.77 5.50 85.34 0.47 2.24 16 15 N -0.78 -42.42 11.94 21.87 0.26 -42.16 16 16 Si 1.00 37.12 29.56 68.60 2.03 39.15 16 17 H -0.25 -8.64 7.11 99.48 0.71 -7.94 16 18 H -0.27 -9.65 7.11 99.48 0.71 -8.95 16 19 H -0.27 -9.65 7.11 99.48 0.71 -8.94 16 20 N -0.56 -32.85 9.26 -186.95 -1.73 -34.58 16 21 C -0.06 -2.43 9.68 22.47 0.22 -2.21 16 22 C -0.20 -6.53 9.02 22.33 0.20 -6.33 16 23 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.06 0.97 7.66 -2.39 -0.02 0.95 16 25 H 0.06 0.97 7.65 -2.38 -0.02 0.95 16 26 H 0.16 3.88 8.06 -2.91 -0.02 3.86 16 27 H 0.13 4.89 7.83 -2.91 -0.02 4.87 16 28 H 0.28 13.82 8.29 -92.70 -0.77 13.06 16 29 H 0.12 5.32 7.83 -2.91 -0.02 5.30 16 30 H 0.15 3.92 6.28 -2.91 -0.02 3.90 16 Total: -1.00 -69.74 271.25 2.58 -67.15 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: -0.78 Total: 29.08 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: 4.79 Total: -4.06 kcal Atomic # 7 Polarization: -119.60 SS G_CDS: -2.49 Total: -122.08 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -0.96 Total: -9.23 kcal Atomic # 14 Polarization: 37.12 SS G_CDS: 2.03 Total: 39.15 kcal Total: -69.74 2.58 -67.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053994821.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.545 kcal (2) G-P(sol) polarization free energy of solvation -69.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds