Wall clock time and date at job start Sun Mar 29 2020 23:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40562 * 120.13779 * 2 1 4 4 C 1.34860 * 120.34200 * 179.97438 * 3 2 1 5 5 N 1.36675 * 120.63859 * 359.97438 * 4 3 2 6 6 C 1.36200 * 132.28328 * 180.02562 * 5 4 3 7 7 C 1.36678 * 107.08056 * 179.74062 * 6 5 4 8 8 C 1.47489 * 125.92692 * 180.28495 * 7 6 5 9 9 O 1.21628 * 119.99645 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00029 * 180.02562 * 8 7 6 11 11 C 1.36916 * 119.99950 * 180.02562 * 10 8 7 12 12 H 1.08002 * 120.00375 * 359.97438 * 11 10 8 13 13 C 1.39011 * 119.99896 * 180.02562 * 11 10 8 14 14 N 1.31388 * 119.99870 * 179.97438 * 13 11 10 15 15 Si 1.86794 * 119.99936 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.47409 * 90.00274 * 15 13 11 17 17 H 1.48501 * 109.47265 * 209.99945 * 15 13 11 18 18 H 1.48497 * 109.47301 * 329.99822 * 15 13 11 19 19 N 1.34597 * 108.14608 * 0.26969 * 7 6 5 20 20 C 1.32246 * 109.02875 * 359.97438 * 19 7 6 21 21 C 1.35919 * 120.13291 * 180.42257 * 2 1 3 22 22 H 1.09000 * 109.46837 * 89.99565 * 1 2 3 23 23 H 1.09002 * 109.47418 * 209.99948 * 1 2 3 24 24 H 1.09000 * 109.47042 * 329.99720 * 1 2 3 25 25 H 1.08003 * 119.82824 * 359.97438 * 3 2 1 26 26 H 1.07993 * 119.67861 * 180.02562 * 4 3 2 27 27 H 1.08002 * 126.46187 * 0.02562 * 6 5 4 28 28 H 0.97002 * 119.99938 * 0.02562 * 10 8 7 29 29 H 0.97002 * 119.99910 * 179.97438 * 14 13 11 30 30 H 1.07995 * 120.32405 * 359.48530 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2127 1.2156 0.0000 4 6 3.5613 1.2204 0.0005 5 7 4.2620 0.0470 0.0016 6 6 5.5970 -0.2232 0.0027 7 6 5.7313 -1.5833 0.0094 8 6 7.0049 -2.3271 0.0188 9 8 8.0612 -1.7242 0.0217 10 7 6.9981 -3.6749 0.0241 11 6 8.1804 -4.3653 0.0334 12 1 9.1184 -3.8300 0.0360 13 6 8.1734 -5.7554 0.0384 14 7 9.3080 -6.4180 0.0468 15 14 6.5511 -6.6813 0.0332 16 1 6.1286 -6.9318 -1.3682 17 1 6.7184 -7.9772 0.7388 18 1 5.5165 -5.8711 0.7249 19 7 4.4997 -2.1262 0.0061 20 6 3.6009 -1.1562 -0.0017 21 6 2.1893 -1.1755 -0.0087 22 1 -0.3633 0.0001 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 1.6722 2.1506 -0.0004 26 1 4.0927 2.1606 0.0009 27 1 6.3983 0.5008 0.0034 28 1 6.1557 -4.1557 0.0214 29 1 9.3031 -7.3880 0.0506 30 1 1.6568 -2.1150 -0.0072 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069348755.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:13:52 Heat of formation + Delta-G solvation = 52.461245 kcal Electronic energy + Delta-G solvation = -16542.861052 eV Core-core repulsion = 13725.508547 eV Total energy + Delta-G solvation = -2817.352505 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.61232 -38.40500 -37.24696 -34.16765 -33.98424 -31.69420 -30.61065 -29.90892 -27.01699 -25.40933 -23.45250 -22.13083 -21.61027 -19.25251 -18.48650 -17.75385 -16.56449 -15.87046 -15.84210 -15.02716 -14.78693 -14.49769 -13.92739 -13.79444 -13.40710 -13.35785 -12.73918 -12.67037 -12.22640 -12.14461 -11.72853 -11.49661 -11.14307 -10.67206 -10.51508 -10.09703 -9.92171 -9.59416 -8.72825 -8.65937 -8.19045 -7.73222 -6.38098 -3.82116 0.67332 1.28581 2.55440 2.64185 3.14390 3.19116 3.21074 3.45107 4.11859 4.17173 4.32282 4.33785 4.55700 4.71113 4.93886 4.97756 5.15609 5.31150 5.32152 5.45807 5.57467 5.65803 5.74843 5.90950 6.06818 6.18849 6.45914 6.75637 7.12444 7.53738 7.94490 8.12725 8.59380 8.89856 9.40781 9.84467 10.73232 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.034815 B = 0.005731 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.057415 B = 4884.529600 C = 5673.422784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.079 4.079 3 C -0.147 4.147 4 C 0.063 3.937 5 N -0.367 5.367 6 C -0.045 4.045 7 C 0.046 3.954 8 C 0.511 3.489 9 O -0.581 6.581 10 N -0.555 5.555 11 C -0.301 4.301 12 H 0.124 0.876 13 C 0.046 3.954 14 N -0.867 5.867 15 Si 0.876 3.124 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.260 1.260 19 N -0.477 5.477 20 C 0.220 3.780 21 C -0.079 4.079 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.147 0.853 26 H 0.163 0.837 27 H 0.193 0.807 28 H 0.382 0.618 29 H 0.277 0.723 30 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.103 13.430 -0.131 23.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.085 4.085 3 C -0.168 4.168 4 C -0.059 4.059 5 N -0.040 5.040 6 C -0.178 4.178 7 C -0.087 4.087 8 C 0.297 3.703 9 O -0.465 6.465 10 N -0.190 5.190 11 C -0.430 4.430 12 H 0.142 0.858 13 C -0.159 4.159 14 N -0.506 5.506 15 Si 0.701 3.299 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.185 1.185 19 N -0.199 5.199 20 C -0.025 4.025 21 C -0.099 4.099 22 H 0.092 0.908 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.165 0.835 26 H 0.180 0.820 27 H 0.210 0.790 28 H 0.217 0.783 29 H 0.087 0.913 30 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -18.320 12.741 -0.119 22.315 hybrid contribution -0.911 0.046 -0.003 0.912 sum -19.230 12.787 -0.122 23.094 Atomic orbital electron populations 1.20729 0.89913 1.03159 1.02657 1.19667 0.96783 0.92062 1.00013 1.20626 0.92085 0.99062 1.05028 1.21598 0.92974 0.88818 1.02525 1.42757 1.07379 1.07510 1.46389 1.22569 0.82873 0.98178 1.14211 1.21237 0.92710 0.91157 1.03617 1.16298 0.85427 0.82190 0.86368 1.90655 1.30486 1.68139 1.57258 1.42095 1.08939 1.05283 1.62719 1.19559 0.86523 0.89611 1.47312 0.85815 1.25097 0.97637 0.96247 0.96923 1.69618 1.25367 1.08414 1.47184 0.86680 0.83360 0.80394 0.79474 1.19237 1.19920 1.18528 1.70915 0.98489 1.28864 1.21648 1.20963 0.94323 0.80469 1.06702 1.20107 0.88140 0.99483 1.02197 0.90803 0.91099 0.91225 0.83498 0.82003 0.79019 0.78324 0.91288 0.83401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 10.02 36.01 0.36 -0.31 16 2 C -0.08 -0.76 5.88 -104.58 -0.62 -1.38 16 3 C -0.15 -1.26 9.67 -39.90 -0.39 -1.65 16 4 C 0.06 0.65 10.93 -16.59 -0.18 0.47 16 5 N -0.37 -5.58 2.93 -62.34 -0.18 -5.76 16 6 C -0.04 -0.79 11.47 -16.18 -0.19 -0.98 16 7 C 0.05 1.00 6.94 -83.45 -0.58 0.42 16 8 C 0.51 13.28 7.77 -12.49 -0.10 13.18 16 9 O -0.58 -16.59 16.44 5.25 0.09 -16.50 16 10 N -0.55 -14.85 5.08 -11.94 -0.06 -14.91 16 11 C -0.30 -8.89 10.16 -14.99 -0.15 -9.04 16 12 H 0.12 4.05 7.38 -52.49 -0.39 3.66 16 13 C 0.05 1.30 5.50 -17.45 -0.10 1.21 16 14 N -0.87 -25.49 13.96 55.50 0.77 -24.72 16 15 Si 0.88 20.48 27.74 -169.99 -4.71 15.76 16 16 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 17 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.26 -5.88 6.52 56.52 0.37 -5.51 16 19 N -0.48 -9.84 11.01 -9.35 -0.10 -9.94 16 20 C 0.22 3.71 7.79 -156.03 -1.22 2.49 16 21 C -0.08 -1.00 9.75 -39.30 -0.38 -1.38 16 22 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 24 H 0.07 0.33 8.10 -51.93 -0.42 -0.09 16 25 H 0.15 0.75 8.06 -52.48 -0.42 0.32 16 26 H 0.16 1.13 8.06 -52.49 -0.42 0.70 16 27 H 0.19 2.96 8.06 -52.49 -0.42 2.54 16 28 H 0.38 9.58 5.45 -40.82 -0.22 9.36 16 29 H 0.28 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 271.48 15.07 4.09 4.09 Total: -1.00 -34.83 271.48 -6.37 -41.21 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -2.73 Total: 7.73 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -3.53 Total: 3.04 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: 0.43 Total: -55.32 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: 0.09 Total: -16.50 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.71 Total: 15.76 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -34.83 -6.37 -41.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069348755.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.668 kcal (2) G-P(sol) polarization free energy of solvation -34.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds