Wall clock time and date at job start Sun Mar 29 2020 22:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99958 * 2 1 4 4 H 1.48501 * 109.47144 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47141 * 120.00009 * 3 2 1 6 6 H 1.48501 * 109.47071 * 239.99409 * 3 2 1 7 7 C 1.37868 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00105 * 187.52056 * 7 2 1 9 9 C 1.50701 * 120.00208 * 7.51992 * 7 2 1 10 10 C 1.53004 * 115.54895 * 275.11209 * 9 7 2 11 11 N 1.46505 * 109.46962 * 294.65392 * 10 9 7 12 12 C 1.47060 * 126.30505 * 278.18479 * 11 10 9 13 13 C 1.54323 * 109.96809 * 150.90153 * 12 11 10 14 14 C 1.55605 * 104.18747 * 45.51274 * 13 12 11 15 15 S 1.67007 * 126.29846 * 98.49401 * 11 10 9 16 16 O 1.42096 * 105.13572 * 298.89840 * 15 11 10 17 17 O 1.42108 * 105.12999 * 68.56509 * 15 11 10 18 18 C 1.52994 * 117.50173 * 129.43783 * 9 7 2 19 19 C 1.52999 * 117.50097 * 60.77790 * 9 7 2 20 20 H 0.96991 * 120.00311 * 175.56293 * 1 2 3 21 21 H 1.08999 * 109.47386 * 54.65729 * 10 9 7 22 22 H 1.08999 * 109.46929 * 174.66070 * 10 9 7 23 23 H 1.08996 * 109.36029 * 271.18592 * 12 11 10 24 24 H 1.09007 * 109.35501 * 30.83320 * 12 11 10 25 25 H 1.08997 * 110.65109 * 286.77700 * 13 12 11 26 26 H 1.08996 * 110.38448 * 164.11544 * 13 12 11 27 27 H 1.08998 * 111.16095 * 204.06087 * 14 13 12 28 28 H 1.09000 * 111.20781 * 79.80413 * 14 13 12 29 29 H 1.08999 * 117.49727 * 0.02562 * 18 9 7 30 30 H 1.08999 * 117.50170 * 145.02209 * 18 9 7 31 31 H 1.08994 * 117.49973 * 214.98832 * 19 9 7 32 32 H 1.09010 * 117.49263 * 359.97438 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1030 1.6964 -1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0775 -1.1980 0.1229 9 6 1.2607 -2.4936 -0.1697 10 6 0.6732 -3.0902 1.1109 11 7 1.7606 -3.4724 2.0152 12 6 2.5477 -4.7132 1.9549 13 6 3.9639 -4.4666 2.5164 14 6 3.7204 -3.6614 3.8254 15 16 2.3297 -2.5824 3.3087 16 8 2.8027 -1.3675 2.7437 17 8 1.2785 -2.6038 4.2648 18 6 1.7742 -3.4676 -1.2320 19 6 0.4750 -2.6932 -1.4672 20 1 -0.4850 -0.8374 -0.0650 21 1 0.0382 -2.3505 1.5983 22 1 0.0806 -3.9708 0.8628 23 1 2.0518 -5.4846 2.5440 24 1 2.6226 -5.0435 0.9188 25 1 4.5593 -3.8825 1.8147 26 1 4.4549 -5.4143 2.7375 27 1 4.5971 -3.0719 4.0936 28 1 3.4257 -4.3186 4.6436 29 1 2.6503 -3.1685 -1.8075 30 1 1.6931 -4.5334 -1.0188 31 1 -0.4603 -3.2498 -1.4087 32 1 0.4957 -1.8842 -2.1976 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083862394.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:39 Heat of formation + Delta-G solvation = -61.846844 kcal Electronic energy + Delta-G solvation = -17090.436193 eV Core-core repulsion = 14371.278118 eV Total energy + Delta-G solvation = -2719.158076 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.20887 -37.84899 -37.38282 -36.59129 -33.85527 -33.36019 -28.27522 -26.87601 -26.11709 -23.05853 -22.75510 -21.43405 -19.71163 -18.57518 -17.93767 -17.50959 -16.64716 -16.02783 -15.64089 -15.53898 -15.20677 -14.91254 -14.40435 -14.17645 -13.90851 -13.64706 -13.02791 -12.93092 -12.74986 -12.63821 -12.52094 -12.24696 -12.13654 -11.97955 -11.92230 -11.42111 -11.23867 -10.42690 -10.33764 -10.17872 -9.55770 -8.39054 -6.05237 -0.57285 1.48751 1.60929 1.76350 1.77494 2.66153 2.93127 3.16697 3.35579 3.40356 3.55965 3.76608 4.07349 4.17177 4.26187 4.45268 4.51462 4.60604 4.61909 4.74288 4.86969 4.90746 4.97175 5.10380 5.12513 5.27630 5.51011 5.57211 5.94094 6.35950 6.44907 6.91880 7.68722 9.03573 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.023581 B = 0.011898 C = 0.009602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.102509 B = 2352.813931 C = 2915.431981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.021 4.021 3 Si 1.087 2.913 4 H -0.288 1.288 5 H -0.287 1.287 6 H -0.269 1.269 7 C -0.532 4.532 8 H 0.037 0.963 9 C -0.030 4.030 10 C 0.206 3.794 11 N -0.977 5.977 12 C 0.069 3.931 13 C -0.118 4.118 14 C -0.558 4.558 15 S 2.528 3.472 16 O -0.980 6.980 17 O -1.022 7.022 18 C -0.157 4.157 19 C -0.183 4.183 20 H 0.264 0.736 21 H 0.030 0.970 22 H 0.076 0.924 23 H 0.093 0.907 24 H 0.096 0.904 25 H 0.085 0.915 26 H 0.152 0.848 27 H 0.160 0.840 28 H 0.169 0.831 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.925 -13.883 5.086 17.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.219 4.219 3 Si 0.913 3.087 4 H -0.214 1.214 5 H -0.213 1.213 6 H -0.194 1.194 7 C -0.570 4.570 8 H 0.055 0.945 9 C -0.032 4.032 10 C 0.081 3.919 11 N -0.818 5.818 12 C -0.056 4.056 13 C -0.157 4.157 14 C -0.693 4.693 15 S 2.629 3.371 16 O -0.969 6.969 17 O -1.012 7.012 18 C -0.194 4.194 19 C -0.222 4.222 20 H 0.074 0.926 21 H 0.049 0.951 22 H 0.094 0.906 23 H 0.112 0.888 24 H 0.114 0.886 25 H 0.104 0.896 26 H 0.170 0.830 27 H 0.178 0.822 28 H 0.187 0.813 29 H 0.091 0.909 30 H 0.121 0.879 31 H 0.105 0.895 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.266 -11.296 5.446 15.019 hybrid contribution 0.117 -1.534 -0.254 1.559 sum 8.384 -12.830 5.191 16.181 Atomic orbital electron populations 1.70850 1.07514 1.30743 1.49710 1.26535 0.96617 1.05102 0.93630 0.83329 0.74687 0.73462 0.77216 1.21416 1.21331 1.19383 1.21276 0.93856 0.90929 1.50944 0.94455 1.19727 1.00013 0.95732 0.87681 1.20360 0.85720 0.96613 0.89188 1.56808 1.46505 1.32240 1.46226 1.22404 0.90874 0.87006 1.05317 1.22812 0.96421 1.04161 0.92292 1.30634 1.16255 1.14405 1.08037 1.07360 0.78529 0.76331 0.74845 1.93661 1.82034 1.45537 1.75707 1.93487 1.56459 1.87808 1.63407 1.22808 0.96176 0.96526 1.03938 1.22693 0.95100 1.02264 1.02105 0.92572 0.95135 0.90621 0.88845 0.88595 0.89588 0.83031 0.82216 0.81333 0.90883 0.87891 0.89516 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.98 13.57 21.44 0.29 -59.69 16 2 C -0.02 -1.24 5.38 84.65 0.46 -0.78 16 3 Si 1.09 56.17 29.91 68.60 2.05 58.23 16 4 H -0.29 -14.80 7.11 99.48 0.71 -14.09 16 5 H -0.29 -14.90 7.11 99.48 0.71 -14.20 16 6 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.53 -30.22 6.98 25.60 0.18 -30.04 16 8 H 0.04 2.21 7.73 -2.91 -0.02 2.18 16 9 C -0.03 -1.40 1.12 -52.93 -0.06 -1.46 16 10 C 0.21 8.95 6.08 86.38 0.52 9.47 16 11 N -0.98 -35.30 3.22 -512.02 -1.65 -36.95 16 12 C 0.07 1.56 6.83 86.72 0.59 2.16 16 13 C -0.12 -1.97 6.81 31.94 0.22 -1.75 16 14 C -0.56 -10.63 7.51 72.88 0.55 -10.08 16 15 S 2.53 94.82 6.17 -56.49 -0.35 94.47 16 16 O -0.98 -48.19 16.25 -127.77 -2.08 -50.27 16 17 O -1.02 -45.24 18.14 -127.77 -2.32 -47.56 16 18 C -0.16 -6.10 9.67 30.61 0.30 -5.80 16 19 C -0.18 -8.11 8.74 30.62 0.27 -7.84 16 20 H 0.26 16.30 6.23 -92.72 -0.58 15.72 16 21 H 0.03 1.57 7.85 -2.39 -0.02 1.55 16 22 H 0.08 2.76 8.09 -2.39 -0.02 2.74 16 23 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.10 2.06 7.18 -2.38 -0.02 2.04 16 25 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.15 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.16 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.17 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 30 H 0.10 3.19 7.50 -2.39 -0.02 3.17 16 31 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 32 H 0.06 2.77 8.14 -2.38 -0.02 2.75 16 Total: -1.00 -83.10 277.42 0.26 -82.84 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: 1.29 Total: 5.06 kcal Atomic # 6 Polarization: -49.15 SS G_CDS: 3.02 Total: -46.13 kcal Atomic # 7 Polarization: -95.29 SS G_CDS: -1.36 Total: -96.64 kcal Atomic # 8 Polarization: -93.43 SS G_CDS: -4.39 Total: -97.83 kcal Atomic # 14 Polarization: 56.17 SS G_CDS: 2.05 Total: 58.23 kcal Atomic # 16 Polarization: 94.82 SS G_CDS: -0.35 Total: 94.47 kcal Total: -83.10 0.26 -82.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862394.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.991 kcal (2) G-P(sol) polarization free energy of solvation -83.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds