Wall clock time and date at job start Sun Mar 29 2020 22:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46851 * 2 1 4 4 H 1.09004 * 109.47198 * 54.82709 * 3 2 1 5 5 C 1.50705 * 109.47206 * 174.82397 * 3 2 1 6 6 H 1.08001 * 119.99698 * 120.00184 * 5 3 2 7 7 C 1.37875 * 120.00081 * 300.00285 * 5 3 2 8 8 N 1.31519 * 119.99769 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00141 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46961 * 59.99997 * 9 7 5 11 11 H 1.48498 * 109.47320 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47035 * 300.00341 * 9 7 5 13 13 N 1.46900 * 109.47291 * 294.82986 * 3 2 1 14 14 C 1.46894 * 111.00271 * 149.14252 * 13 3 2 15 15 H 1.08996 * 109.40691 * 328.36116 * 14 13 3 16 16 C 1.49581 * 109.41669 * 88.21706 * 14 13 3 17 17 C 1.30325 * 119.16178 * 138.66782 * 16 14 13 18 18 S 1.77795 * 107.56114 * 359.67044 * 17 16 14 19 19 O 1.42100 * 105.57414 * 100.43650 * 18 17 16 20 20 O 1.42100 * 105.57612 * 230.86938 * 18 17 16 21 21 C 1.54938 * 109.36731 * 208.52796 * 14 13 3 22 22 H 1.09000 * 109.47577 * 55.40458 * 1 2 3 23 23 H 1.09004 * 109.46701 * 175.40724 * 1 2 3 24 24 H 1.08998 * 109.47038 * 295.40306 * 1 2 3 25 25 H 1.08997 * 109.47376 * 240.00305 * 2 1 3 26 26 H 1.08995 * 109.47688 * 119.99708 * 2 1 3 27 27 H 0.96999 * 119.99472 * 180.02562 * 8 7 5 28 28 H 1.00903 * 110.99459 * 273.09601 * 13 3 2 29 29 H 1.08005 * 120.41793 * 318.69274 * 16 14 13 30 30 H 1.07999 * 126.22282 * 179.69435 * 17 16 14 31 31 H 1.08998 * 111.34168 * 332.49278 * 21 14 13 32 32 H 1.09005 * 111.33681 * 97.20058 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6029 1.9825 0.8401 5 6 3.5415 1.4446 0.1282 6 1 4.1490 1.8884 -0.6467 7 6 4.1397 0.8798 1.2346 8 7 3.3999 0.3398 2.1783 9 14 6.0010 0.8817 1.3931 10 1 6.4964 2.2816 1.3928 11 1 6.3902 0.2197 2.6641 12 1 6.5960 0.1458 0.2487 13 7 1.6548 2.0981 -1.2569 14 6 1.4402 3.5373 -1.0559 15 1 1.0645 3.7101 -0.0474 16 6 2.7359 4.2630 -1.2348 17 6 2.7464 5.3933 -1.8835 18 16 1.0785 5.7323 -2.3976 19 8 0.5762 6.6783 -1.4637 20 8 1.1578 6.0161 -3.7877 21 6 0.4040 4.0512 -2.0868 22 1 -0.3634 0.5835 -0.8459 23 1 -0.3633 -1.0244 -0.0823 24 1 -0.3633 0.4408 0.9283 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5137 0.8899 27 1 3.8208 -0.0572 2.9569 28 1 2.3422 1.9320 -1.9767 29 1 3.6512 3.8553 -0.8318 30 1 3.6111 6.0115 -2.0746 31 1 0.4130 3.4465 -2.9935 32 1 -0.5956 4.0986 -1.6545 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084130987.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:11 Heat of formation + Delta-G solvation = -45.821373 kcal Electronic energy + Delta-G solvation = -16225.552934 eV Core-core repulsion = 13507.089775 eV Total energy + Delta-G solvation = -2718.463159 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.12880 -36.89095 -35.74629 -34.93139 -32.15325 -30.91841 -29.23529 -26.26830 -23.65548 -22.52798 -20.37410 -19.80938 -18.64440 -17.19219 -16.72592 -15.94587 -15.23355 -15.06883 -14.38237 -14.24884 -13.79385 -13.26515 -13.08386 -12.70498 -12.15545 -12.05966 -11.86889 -11.80048 -11.49561 -11.34572 -11.15720 -10.87522 -10.60174 -10.40492 -10.31038 -9.97021 -9.75660 -9.63345 -9.26653 -8.57374 -7.75237 -6.20802 -4.35064 0.26489 1.61464 2.82065 3.15298 3.21977 3.23812 3.73818 4.21713 4.30394 4.56805 4.70024 5.01164 5.14654 5.22320 5.60156 5.77074 5.82952 6.08613 6.25096 6.35870 6.37899 6.54601 6.86859 7.01441 7.18196 7.34290 7.56093 7.76406 7.84165 8.03178 8.31051 8.73855 9.33892 10.80249 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.027198 B = 0.007312 C = 0.006153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.247205 B = 3828.333815 C = 4549.718588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.106 4.106 3 C 0.210 3.790 4 H 0.037 0.963 5 C -0.557 4.557 6 H 0.056 0.944 7 C 0.072 3.928 8 N -0.879 5.879 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.665 5.665 14 C 0.097 3.903 15 H 0.119 0.881 16 C -0.055 4.055 17 C -0.686 4.686 18 S 2.435 3.565 19 O -0.943 6.943 20 O -0.949 6.949 21 C -0.555 4.555 22 H 0.050 0.950 23 H 0.027 0.973 24 H 0.036 0.964 25 H 0.033 0.967 26 H 0.093 0.907 27 H 0.265 0.735 28 H 0.339 0.661 29 H 0.151 0.849 30 H 0.174 0.826 31 H 0.148 0.852 32 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.099 4.495 -5.774 8.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.145 4.145 3 C 0.103 3.897 4 H 0.055 0.945 5 C -0.596 4.596 6 H 0.075 0.925 7 C -0.132 4.132 8 N -0.516 5.516 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.294 5.294 14 C -0.016 4.016 15 H 0.136 0.864 16 C -0.077 4.077 17 C -0.795 4.795 18 S 2.618 3.382 19 O -0.940 6.940 20 O -0.946 6.946 21 C -0.687 4.687 22 H 0.069 0.931 23 H 0.046 0.954 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.111 0.889 27 H 0.075 0.925 28 H 0.157 0.843 29 H 0.169 0.831 30 H 0.191 0.809 31 H 0.166 0.834 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.170 5.048 -5.848 9.295 hybrid contribution 2.738 -0.522 0.711 2.876 sum -2.432 4.526 -5.137 7.265 Atomic orbital electron populations 1.21743 0.98900 0.98824 1.00410 1.21507 0.92202 0.98787 1.01998 1.19374 0.93447 0.91773 0.85143 0.94512 1.21768 0.92232 1.39670 1.05918 0.92545 1.24922 0.98121 0.94594 0.95607 1.69851 1.35167 1.37336 1.09257 0.86704 0.85632 0.78351 0.77633 1.20296 1.21056 1.20135 1.61125 1.51576 1.04296 1.12371 1.21137 0.88801 0.92292 0.99330 0.86353 1.24400 1.02641 0.92447 0.88192 1.32500 1.24714 1.07131 1.15140 1.07395 0.77500 0.78328 0.74938 1.93611 1.79482 1.57436 1.63446 1.93566 1.85875 1.83806 1.31345 1.30664 1.08697 1.19908 1.09423 0.93090 0.95425 0.94438 0.94822 0.88922 0.92508 0.84350 0.83103 0.80887 0.83363 0.83816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.85 37.16 0.37 -2.26 16 2 C -0.11 -2.30 5.45 -26.73 -0.15 -2.44 16 3 C 0.21 4.53 2.00 -68.86 -0.14 4.40 16 4 H 0.04 0.88 7.28 -51.93 -0.38 0.50 16 5 C -0.56 -13.27 7.58 -34.44 -0.26 -13.53 16 6 H 0.06 1.30 6.64 -52.49 -0.35 0.95 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -23.01 11.29 55.43 0.63 -22.38 16 9 Si 0.89 19.68 29.54 -169.99 -5.02 14.66 16 10 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 13 N -0.66 -11.62 5.42 -101.66 -0.55 -12.17 16 14 C 0.10 1.47 2.98 -68.38 -0.20 1.27 16 15 H 0.12 1.85 7.30 -51.93 -0.38 1.47 16 16 C -0.06 -0.85 9.08 -36.37 -0.33 -1.18 16 17 C -0.69 -9.63 11.04 29.20 0.32 -9.31 16 18 S 2.44 32.46 6.19 -107.50 -0.67 31.79 16 19 O -0.94 -15.37 18.02 -57.38 -1.03 -16.40 16 20 O -0.95 -15.13 18.02 -57.38 -1.03 -16.17 16 21 C -0.55 -6.46 7.41 38.18 0.28 -6.18 16 22 H 0.05 0.89 7.64 -51.93 -0.40 0.49 16 23 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.09 2.28 5.95 -51.93 -0.31 1.97 16 27 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 28 H 0.34 5.80 7.96 -39.29 -0.31 5.49 16 29 H 0.15 2.55 6.26 -52.48 -0.33 2.23 16 30 H 0.17 2.21 8.06 -52.49 -0.42 1.79 16 31 H 0.15 1.54 8.09 -51.93 -0.42 1.12 16 32 H 0.14 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 276.54 15.07 4.17 4.17 Total: -1.00 -29.68 276.54 -7.83 -37.51 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -4.12 Total: 6.52 kcal Atomic # 6 Polarization: -27.32 SS G_CDS: -0.20 Total: -27.52 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: 0.07 Total: -34.55 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -2.07 Total: -32.57 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Atomic # 16 Polarization: 32.46 SS G_CDS: -0.67 Total: 31.79 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.68 -7.83 -37.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084130987.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.313 kcal (2) G-P(sol) polarization free energy of solvation -29.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds