Wall clock time and date at job start Sun Mar 29 2020 22:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46851 * 2 1 4 4 H 1.09004 * 109.47198 * 54.82709 * 3 2 1 5 5 C 1.50705 * 109.47206 * 174.82397 * 3 2 1 6 6 H 1.08001 * 119.99698 * 120.00184 * 5 3 2 7 7 C 1.37875 * 120.00081 * 300.00285 * 5 3 2 8 8 N 1.31519 * 119.99769 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00141 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46961 * 59.99997 * 9 7 5 11 11 H 1.48498 * 109.47320 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47035 * 300.00341 * 9 7 5 13 13 N 1.46900 * 109.47291 * 294.82986 * 3 2 1 14 14 C 1.46894 * 111.00271 * 149.14252 * 13 3 2 15 15 H 1.08996 * 109.40691 * 328.36116 * 14 13 3 16 16 C 1.49581 * 109.41669 * 88.21706 * 14 13 3 17 17 C 1.30325 * 119.16178 * 138.66782 * 16 14 13 18 18 S 1.77795 * 107.56114 * 359.67044 * 17 16 14 19 19 O 1.42100 * 105.57414 * 100.43650 * 18 17 16 20 20 O 1.42100 * 105.57612 * 230.86938 * 18 17 16 21 21 C 1.54938 * 109.36731 * 208.52796 * 14 13 3 22 22 H 1.09000 * 109.47577 * 55.40458 * 1 2 3 23 23 H 1.09004 * 109.46701 * 175.40724 * 1 2 3 24 24 H 1.08998 * 109.47038 * 295.40306 * 1 2 3 25 25 H 1.08997 * 109.47376 * 240.00305 * 2 1 3 26 26 H 1.08995 * 109.47688 * 119.99708 * 2 1 3 27 27 H 0.96999 * 119.99472 * 180.02562 * 8 7 5 28 28 H 1.00903 * 110.99459 * 273.09601 * 13 3 2 29 29 H 1.08005 * 120.41793 * 318.69274 * 16 14 13 30 30 H 1.07999 * 126.22282 * 179.69435 * 17 16 14 31 31 H 1.08998 * 111.34168 * 332.49278 * 21 14 13 32 32 H 1.09005 * 111.33681 * 97.20058 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6029 1.9825 0.8401 5 6 3.5415 1.4446 0.1282 6 1 4.1490 1.8884 -0.6467 7 6 4.1397 0.8798 1.2346 8 7 3.3999 0.3398 2.1783 9 14 6.0010 0.8817 1.3931 10 1 6.4964 2.2816 1.3928 11 1 6.3902 0.2197 2.6641 12 1 6.5960 0.1458 0.2487 13 7 1.6548 2.0981 -1.2569 14 6 1.4402 3.5373 -1.0559 15 1 1.0645 3.7101 -0.0474 16 6 2.7359 4.2630 -1.2348 17 6 2.7464 5.3933 -1.8835 18 16 1.0785 5.7323 -2.3976 19 8 0.5762 6.6783 -1.4637 20 8 1.1578 6.0161 -3.7877 21 6 0.4040 4.0512 -2.0868 22 1 -0.3634 0.5835 -0.8459 23 1 -0.3633 -1.0244 -0.0823 24 1 -0.3633 0.4408 0.9283 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5137 0.8899 27 1 3.8208 -0.0572 2.9569 28 1 2.3422 1.9320 -1.9767 29 1 3.6512 3.8553 -0.8318 30 1 3.6111 6.0115 -2.0746 31 1 0.4130 3.4465 -2.9935 32 1 -0.5956 4.0986 -1.6545 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084130987.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:11 Heat of formation + Delta-G solvation = -68.062988 kcal Electronic energy + Delta-G solvation = -16226.517403 eV Core-core repulsion = 13507.089775 eV Total energy + Delta-G solvation = -2719.427628 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.46339 -38.09944 -36.96033 -36.48355 -33.89753 -32.35043 -30.49893 -27.95290 -25.10421 -23.99139 -21.58798 -21.48192 -19.78564 -18.72917 -18.13203 -17.20638 -16.74868 -16.42007 -15.77072 -15.62147 -15.22644 -14.62570 -14.58003 -14.10150 -13.45418 -13.37160 -13.21830 -13.08739 -13.06801 -12.93138 -12.79312 -12.56943 -12.18623 -11.82393 -11.64282 -11.41842 -11.19685 -11.18144 -10.93897 -10.45582 -9.28403 -8.08968 -6.28468 -0.83098 0.41821 1.38191 1.41465 1.45961 1.70900 2.38256 2.65172 3.13145 3.18666 3.41875 3.57595 3.76366 4.14614 4.49039 4.62888 4.70630 4.73050 4.81991 4.91488 4.97041 5.17958 5.21755 5.46940 5.53141 5.62918 5.77330 6.05041 6.15146 6.29638 6.68259 6.95641 7.42940 8.89005 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.027198 B = 0.007312 C = 0.006153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.247205 B = 3828.333815 C = 4549.718588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.105 4.105 3 C 0.216 3.784 4 H 0.013 0.987 5 C -0.559 4.559 6 H 0.061 0.939 7 C 0.025 3.975 8 N -0.907 5.907 9 Si 0.941 3.059 10 H -0.275 1.275 11 H -0.289 1.289 12 H -0.273 1.273 13 N -0.655 5.655 14 C 0.090 3.910 15 H 0.113 0.887 16 C -0.070 4.070 17 C -0.677 4.677 18 S 2.461 3.539 19 O -0.971 6.971 20 O -0.971 6.971 21 C -0.528 4.528 22 H 0.066 0.934 23 H 0.041 0.959 24 H 0.031 0.969 25 H 0.030 0.970 26 H 0.060 0.940 27 H 0.261 0.739 28 H 0.343 0.657 29 H 0.132 0.868 30 H 0.184 0.816 31 H 0.170 0.830 32 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.729 4.794 -7.018 9.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.143 4.143 3 C 0.107 3.893 4 H 0.030 0.970 5 C -0.598 4.598 6 H 0.079 0.921 7 C -0.176 4.176 8 N -0.546 5.546 9 Si 0.768 3.232 10 H -0.201 1.201 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.284 5.284 14 C -0.023 4.023 15 H 0.131 0.869 16 C -0.091 4.091 17 C -0.785 4.785 18 S 2.646 3.354 19 O -0.968 6.968 20 O -0.968 6.968 21 C -0.662 4.662 22 H 0.085 0.915 23 H 0.060 0.940 24 H 0.050 0.950 25 H 0.049 0.951 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.161 0.839 29 H 0.150 0.850 30 H 0.201 0.799 31 H 0.188 0.812 32 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -5.785 5.379 -7.114 10.631 hybrid contribution 2.929 -0.588 1.070 3.173 sum -2.857 4.791 -6.043 8.224 Atomic orbital electron populations 1.21621 0.96346 1.00057 1.00766 1.21380 0.94490 0.98286 1.00190 1.19137 0.92022 0.91948 0.86162 0.96954 1.22173 0.93791 1.38314 1.05503 0.92094 1.25573 1.01321 0.94915 0.95823 1.69980 1.36275 1.38606 1.09709 0.85882 0.81918 0.78172 0.77259 1.20071 1.21474 1.19855 1.61021 1.51197 1.05717 1.10420 1.21250 0.89669 0.90937 1.00420 0.86936 1.24215 1.02150 0.93323 0.89439 1.32724 1.25847 1.06381 1.13591 1.06672 0.76573 0.78560 0.73628 1.93576 1.79737 1.59443 1.64066 1.93537 1.86049 1.84714 1.32545 1.30601 1.08922 1.17299 1.09358 0.91500 0.93985 0.94989 0.95108 0.92195 0.92931 0.83922 0.85033 0.79868 0.81175 0.80712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.62 9.85 71.98 0.71 -3.91 16 2 C -0.10 -4.49 5.45 30.60 0.17 -4.32 16 3 C 0.22 9.25 2.00 44.17 0.09 9.33 16 4 H 0.01 0.60 7.28 -2.38 -0.02 0.58 16 5 C -0.56 -26.58 7.58 25.60 0.19 -26.39 16 6 H 0.06 2.78 6.64 -2.91 -0.02 2.76 16 7 C 0.02 1.24 5.29 84.65 0.45 1.68 16 8 N -0.91 -48.38 11.29 21.45 0.24 -48.13 16 9 Si 0.94 40.57 29.54 68.60 2.03 42.59 16 10 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 13 N -0.65 -21.74 5.42 -475.53 -2.58 -24.32 16 14 C 0.09 2.55 2.98 44.48 0.13 2.68 16 15 H 0.11 3.37 7.30 -2.39 -0.02 3.35 16 16 C -0.07 -2.05 9.08 26.00 0.24 -1.82 16 17 C -0.68 -17.94 11.04 68.48 0.76 -17.18 16 18 S 2.46 60.14 6.19 -56.49 -0.35 59.79 16 19 O -0.97 -29.98 18.02 -127.81 -2.30 -32.28 16 20 O -0.97 -28.82 18.02 -127.81 -2.30 -31.13 16 21 C -0.53 -10.46 7.41 72.64 0.54 -9.92 16 22 H 0.07 2.14 7.64 -2.39 -0.02 2.12 16 23 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.06 2.98 5.95 -2.39 -0.01 2.97 16 27 H 0.26 13.52 8.31 -92.71 -0.77 12.75 16 28 H 0.34 11.09 7.96 -89.69 -0.71 10.38 16 29 H 0.13 4.43 6.26 -2.91 -0.02 4.41 16 30 H 0.18 4.40 8.06 -2.91 -0.02 4.37 16 31 H 0.17 2.78 8.09 -2.39 -0.02 2.76 16 32 H 0.18 2.49 8.14 -2.38 -0.02 2.47 16 Total: -1.00 -62.75 276.54 -1.58 -64.33 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.41 Total: 18.98 kcal Atomic # 6 Polarization: -53.11 SS G_CDS: 3.27 Total: -49.84 kcal Atomic # 7 Polarization: -70.12 SS G_CDS: -2.34 Total: -72.45 kcal Atomic # 8 Polarization: -58.80 SS G_CDS: -4.60 Total: -63.40 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.59 kcal Atomic # 16 Polarization: 60.14 SS G_CDS: -0.35 Total: 59.79 kcal Total: -62.75 -1.58 -64.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084130987.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.733 kcal (2) G-P(sol) polarization free energy of solvation -62.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds