Wall clock time and date at job start Sun Mar 29 2020 22:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46878 * 2 1 4 4 H 1.09000 * 109.47449 * 54.38452 * 3 2 1 5 5 C 1.50701 * 109.46962 * 174.38919 * 3 2 1 6 6 H 1.07997 * 120.00194 * 119.99984 * 5 3 2 7 7 C 1.37875 * 119.99828 * 299.71942 * 5 3 2 8 8 N 1.31520 * 120.00160 * 0.27993 * 7 5 3 9 9 Si 1.86800 * 120.00063 * 180.27547 * 7 5 3 10 10 H 1.48504 * 109.47195 * 90.00224 * 9 7 5 11 11 H 1.48493 * 109.47456 * 209.99938 * 9 7 5 12 12 H 1.48497 * 109.47187 * 330.00388 * 9 7 5 13 13 N 1.46902 * 109.47061 * 294.38288 * 3 2 1 14 14 C 1.46894 * 111.00136 * 155.99574 * 13 3 2 15 15 H 1.09006 * 109.40503 * 33.75995 * 14 13 3 16 16 C 1.49572 * 109.41804 * 273.90122 * 14 13 3 17 17 C 1.30327 * 119.15826 * 221.27255 * 16 14 13 18 18 S 1.77805 * 107.56467 * 0.32693 * 17 16 14 19 19 O 1.42097 * 105.57306 * 129.09273 * 18 17 16 20 20 O 1.42101 * 105.57363 * 259.53587 * 18 17 16 21 21 C 1.54938 * 109.41440 * 153.55359 * 14 13 3 22 22 H 1.08996 * 109.47336 * 66.04947 * 1 2 3 23 23 H 1.09004 * 109.46518 * 186.04677 * 1 2 3 24 24 H 1.08999 * 109.47322 * 306.04454 * 1 2 3 25 25 H 1.08994 * 109.47507 * 239.99278 * 2 1 3 26 26 H 1.09001 * 109.47239 * 119.99595 * 2 1 3 27 27 H 0.96995 * 119.99833 * 179.97438 * 8 7 5 28 28 H 1.00907 * 110.99600 * 32.04860 * 13 3 2 29 29 H 1.08002 * 120.42169 * 41.25200 * 16 14 13 30 30 H 1.07996 * 126.22232 * 180.30559 * 17 16 14 31 31 H 1.09001 * 111.34066 * 262.83438 * 21 14 13 32 32 H 1.09005 * 111.33553 * 27.54231 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5968 1.9846 0.8354 5 6 3.5405 1.4448 0.1389 6 1 4.1536 1.8866 -0.6326 7 6 4.1305 0.8880 1.2538 8 7 3.3839 0.3500 2.1934 9 14 5.9901 0.8977 1.4297 10 1 6.4147 2.1366 2.1299 11 1 6.4192 -0.2868 2.2156 12 1 6.6149 0.8513 0.0833 13 7 1.6641 2.0948 -1.2615 14 6 1.6065 3.5540 -1.1029 15 1 2.3651 3.8707 -0.3871 16 6 0.2536 3.9465 -0.6000 17 6 -0.3268 5.0023 -1.0971 18 16 0.7645 5.6881 -2.3218 19 8 -0.0301 5.8605 -3.4872 20 8 1.4144 6.7798 -1.6853 21 6 1.8755 4.2316 -2.4701 22 1 -0.3634 0.4172 -0.9391 23 1 -0.3632 -1.0220 0.1083 24 1 -0.3634 0.6047 0.8309 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.7990 -0.0420 2.9775 28 1 0.7878 1.7339 -1.6080 29 1 -0.2361 3.3623 0.1650 30 1 -1.2949 5.3899 -0.8164 31 1 2.9179 4.5359 -2.5637 32 1 1.5770 3.5877 -3.2974 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084130990.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:18 Heat of formation + Delta-G solvation = -43.331912 kcal Electronic energy + Delta-G solvation = -16198.946445 eV Core-core repulsion = 13480.591237 eV Total energy + Delta-G solvation = -2718.355208 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.22014 -36.92893 -35.78256 -35.05456 -32.14872 -31.05806 -29.02943 -26.53722 -23.66780 -22.67166 -20.40800 -19.86879 -18.67066 -17.13644 -16.35009 -16.10490 -15.41973 -14.99659 -14.51818 -14.22583 -14.18276 -13.30106 -13.00453 -12.71439 -12.36196 -12.17605 -11.95689 -11.89904 -11.70593 -11.33173 -10.96548 -10.79234 -10.67895 -10.40630 -10.16197 -10.07199 -9.88085 -9.74030 -9.30956 -8.51766 -7.68076 -6.12947 -4.18646 0.22574 1.45733 2.76109 3.23866 3.31490 3.34958 3.69907 4.26060 4.32651 4.51472 4.65382 5.01196 5.17269 5.22692 5.51716 5.72515 5.83095 5.87721 5.98324 6.01581 6.20877 6.24494 6.65139 6.84314 6.91868 7.19904 7.56316 7.71443 7.92814 8.15710 8.43432 8.88797 9.47696 10.92482 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.028163 B = 0.007010 C = 0.006053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.972823 B = 3993.262603 C = 4624.943371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C 0.212 3.788 4 H 0.008 0.992 5 C -0.503 4.503 6 H 0.065 0.935 7 C 0.058 3.942 8 N -0.893 5.893 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.661 5.661 14 C 0.094 3.906 15 H 0.132 0.868 16 C -0.065 4.065 17 C -0.678 4.678 18 S 2.435 3.565 19 O -0.948 6.948 20 O -0.939 6.939 21 C -0.548 4.548 22 H 0.035 0.965 23 H 0.040 0.960 24 H 0.042 0.958 25 H 0.044 0.956 26 H 0.102 0.898 27 H 0.262 0.738 28 H 0.326 0.674 29 H 0.135 0.865 30 H 0.174 0.826 31 H 0.147 0.853 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.274 4.451 -5.780 9.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.165 4.165 3 C 0.106 3.894 4 H 0.026 0.974 5 C -0.542 4.542 6 H 0.083 0.917 7 C -0.144 4.144 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.291 5.291 14 C -0.019 4.019 15 H 0.149 0.851 16 C -0.087 4.087 17 C -0.787 4.787 18 S 2.618 3.382 19 O -0.945 6.945 20 O -0.936 6.936 21 C -0.681 4.681 22 H 0.054 0.946 23 H 0.060 0.940 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.121 0.879 27 H 0.072 0.928 28 H 0.144 0.856 29 H 0.153 0.847 30 H 0.192 0.808 31 H 0.166 0.834 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.619 5.215 -6.276 9.377 hybrid contribution -0.108 -0.871 1.404 1.656 sum -4.727 4.344 -4.872 8.059 Atomic orbital electron populations 1.21922 0.99526 1.00172 0.99477 1.21782 0.91254 0.99958 1.03511 1.19355 0.96029 0.90354 0.83706 0.97389 1.21165 0.90870 1.37649 1.04505 0.91722 1.24963 0.98396 0.95288 0.95710 1.69856 1.34975 1.38998 1.09423 0.86512 0.85311 0.77525 0.78180 1.20714 1.21271 1.19804 1.60986 1.35300 0.99070 1.33763 1.21170 0.93370 0.93627 0.93721 0.85079 1.24219 0.95748 0.93939 0.94795 1.32582 1.15184 1.10024 1.20886 1.07455 0.77508 0.77617 0.75632 1.93569 1.66890 1.85868 1.48150 1.93623 1.75801 1.48818 1.75404 1.30626 1.15169 1.16816 1.05452 0.94571 0.94048 0.93839 0.93700 0.87942 0.92839 0.85570 0.84695 0.80808 0.83450 0.83410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.63 37.16 0.36 -2.29 16 2 C -0.13 -2.69 5.37 -26.73 -0.14 -2.84 16 3 C 0.21 4.68 1.84 -68.86 -0.13 4.55 16 4 H 0.01 0.20 7.65 -51.93 -0.40 -0.20 16 5 C -0.50 -12.68 8.44 -34.44 -0.29 -12.97 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.50 5.29 -17.82 -0.09 1.40 16 8 N -0.89 -23.85 11.30 55.43 0.63 -23.23 16 9 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 N -0.66 -11.88 6.02 -101.66 -0.61 -12.49 16 14 C 0.09 1.46 2.77 -68.39 -0.19 1.27 16 15 H 0.13 2.25 7.58 -51.93 -0.39 1.86 16 16 C -0.07 -0.92 9.14 -36.38 -0.33 -1.25 16 17 C -0.68 -8.84 11.04 29.20 0.32 -8.52 16 18 S 2.44 32.05 6.19 -107.50 -0.67 31.38 16 19 O -0.95 -14.79 18.01 -57.38 -1.03 -15.82 16 20 O -0.94 -15.33 18.02 -57.38 -1.03 -16.36 16 21 C -0.55 -6.73 7.41 38.18 0.28 -6.45 16 22 H 0.04 0.54 6.66 -51.93 -0.35 0.20 16 23 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.10 2.50 5.95 -51.93 -0.31 2.19 16 27 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 28 H 0.33 5.23 6.32 -39.29 -0.25 4.98 16 29 H 0.14 1.88 8.02 -52.49 -0.42 1.46 16 30 H 0.17 1.99 8.06 -52.49 -0.42 1.56 16 31 H 0.15 1.58 8.14 -51.93 -0.42 1.15 16 32 H 0.15 1.61 8.09 -51.93 -0.42 1.19 16 LS Contribution 278.36 15.07 4.19 4.19 Total: -1.00 -30.87 278.36 -7.95 -38.82 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -4.19 Total: 5.26 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: -0.21 Total: -27.09 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: 0.01 Total: -35.72 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -2.07 Total: -32.18 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 32.05 SS G_CDS: -0.67 Total: 31.38 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.87 -7.95 -38.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084130990.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.511 kcal (2) G-P(sol) polarization free energy of solvation -30.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds