Wall clock time and date at job start Sun Mar 29 2020 22:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46878 * 2 1 4 4 H 1.09000 * 109.47449 * 54.38452 * 3 2 1 5 5 C 1.50701 * 109.46962 * 174.38919 * 3 2 1 6 6 H 1.07997 * 120.00194 * 119.99984 * 5 3 2 7 7 C 1.37875 * 119.99828 * 299.71942 * 5 3 2 8 8 N 1.31520 * 120.00160 * 0.27993 * 7 5 3 9 9 Si 1.86800 * 120.00063 * 180.27547 * 7 5 3 10 10 H 1.48504 * 109.47195 * 90.00224 * 9 7 5 11 11 H 1.48493 * 109.47456 * 209.99938 * 9 7 5 12 12 H 1.48497 * 109.47187 * 330.00388 * 9 7 5 13 13 N 1.46902 * 109.47061 * 294.38288 * 3 2 1 14 14 C 1.46894 * 111.00136 * 155.99574 * 13 3 2 15 15 H 1.09006 * 109.40503 * 33.75995 * 14 13 3 16 16 C 1.49572 * 109.41804 * 273.90122 * 14 13 3 17 17 C 1.30327 * 119.15826 * 221.27255 * 16 14 13 18 18 S 1.77805 * 107.56467 * 0.32693 * 17 16 14 19 19 O 1.42097 * 105.57306 * 129.09273 * 18 17 16 20 20 O 1.42101 * 105.57363 * 259.53587 * 18 17 16 21 21 C 1.54938 * 109.41440 * 153.55359 * 14 13 3 22 22 H 1.08996 * 109.47336 * 66.04947 * 1 2 3 23 23 H 1.09004 * 109.46518 * 186.04677 * 1 2 3 24 24 H 1.08999 * 109.47322 * 306.04454 * 1 2 3 25 25 H 1.08994 * 109.47507 * 239.99278 * 2 1 3 26 26 H 1.09001 * 109.47239 * 119.99595 * 2 1 3 27 27 H 0.96995 * 119.99833 * 179.97438 * 8 7 5 28 28 H 1.00907 * 110.99600 * 32.04860 * 13 3 2 29 29 H 1.08002 * 120.42169 * 41.25200 * 16 14 13 30 30 H 1.07996 * 126.22232 * 180.30559 * 17 16 14 31 31 H 1.09001 * 111.34066 * 262.83438 * 21 14 13 32 32 H 1.09005 * 111.33553 * 27.54231 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5968 1.9846 0.8354 5 6 3.5405 1.4448 0.1389 6 1 4.1536 1.8866 -0.6326 7 6 4.1305 0.8880 1.2538 8 7 3.3839 0.3500 2.1934 9 14 5.9901 0.8977 1.4297 10 1 6.4147 2.1366 2.1299 11 1 6.4192 -0.2868 2.2156 12 1 6.6149 0.8513 0.0833 13 7 1.6641 2.0948 -1.2615 14 6 1.6065 3.5540 -1.1029 15 1 2.3651 3.8707 -0.3871 16 6 0.2536 3.9465 -0.6000 17 6 -0.3268 5.0023 -1.0971 18 16 0.7645 5.6881 -2.3218 19 8 -0.0301 5.8605 -3.4872 20 8 1.4144 6.7798 -1.6853 21 6 1.8755 4.2316 -2.4701 22 1 -0.3634 0.4172 -0.9391 23 1 -0.3632 -1.0220 0.1083 24 1 -0.3634 0.6047 0.8309 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.7990 -0.0420 2.9775 28 1 0.7878 1.7339 -1.6080 29 1 -0.2361 3.3623 0.1650 30 1 -1.2949 5.3899 -0.8164 31 1 2.9179 4.5359 -2.5637 32 1 1.5770 3.5877 -3.2974 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084130990.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:18 Heat of formation + Delta-G solvation = -66.795135 kcal Electronic energy + Delta-G solvation = -16199.963886 eV Core-core repulsion = 13480.591237 eV Total energy + Delta-G solvation = -2719.372650 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.55069 -38.12836 -36.98949 -36.57261 -33.95577 -32.41512 -30.28261 -28.28285 -25.10750 -24.13309 -21.61247 -21.51629 -19.79776 -18.39762 -18.13484 -17.36034 -16.71766 -16.54231 -15.85843 -15.69783 -15.46080 -14.70224 -14.51745 -14.06562 -13.74973 -13.45416 -13.32217 -13.11095 -13.07146 -12.87210 -12.72995 -12.56755 -12.03609 -11.93898 -11.62033 -11.52655 -11.31748 -11.18686 -11.01758 -10.44103 -9.21646 -8.07985 -6.19125 -0.86733 0.34289 1.42607 1.45706 1.54059 1.67831 2.44230 2.61524 3.12799 3.20105 3.36529 3.54252 3.69303 4.16017 4.40867 4.50054 4.57350 4.64129 4.68766 4.75199 4.83141 5.07676 5.13400 5.22181 5.35846 5.57025 5.74565 5.87867 6.27474 6.40346 6.85192 6.94472 7.50204 8.95237 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.028163 B = 0.007010 C = 0.006053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.972823 B = 3993.262603 C = 4624.943371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 C 0.218 3.782 4 H -0.015 1.015 5 C -0.514 4.514 6 H 0.058 0.942 7 C 0.012 3.988 8 N -0.918 5.918 9 Si 0.950 3.050 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.270 1.270 13 N -0.661 5.661 14 C 0.086 3.914 15 H 0.111 0.889 16 C -0.074 4.074 17 C -0.663 4.663 18 S 2.461 3.539 19 O -0.968 6.968 20 O -0.971 6.971 21 C -0.533 4.533 22 H 0.061 0.939 23 H 0.054 0.946 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.068 0.932 27 H 0.260 0.740 28 H 0.339 0.661 29 H 0.136 0.864 30 H 0.194 0.806 31 H 0.166 0.834 32 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.749 4.718 -6.889 10.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.162 4.162 3 C 0.110 3.890 4 H 0.003 0.997 5 C -0.553 4.553 6 H 0.076 0.924 7 C -0.186 4.186 8 N -0.558 5.558 9 Si 0.777 3.223 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.194 1.194 13 N -0.292 5.292 14 C -0.026 4.026 15 H 0.128 0.872 16 C -0.096 4.096 17 C -0.771 4.771 18 S 2.645 3.355 19 O -0.965 6.965 20 O -0.968 6.968 21 C -0.665 4.665 22 H 0.080 0.920 23 H 0.073 0.927 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.159 0.841 29 H 0.154 0.846 30 H 0.211 0.789 31 H 0.184 0.816 32 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -5.108 5.507 -7.408 10.550 hybrid contribution 0.024 -0.932 1.725 1.961 sum -5.084 4.575 -5.682 8.892 Atomic orbital electron populations 1.21804 0.96275 1.01303 1.00750 1.21614 0.94195 0.98914 1.01500 1.19092 0.94267 0.90918 0.84709 0.99695 1.21512 0.92798 1.36886 1.04100 0.92367 1.25621 1.01830 0.95413 0.95781 1.69981 1.36153 1.39889 1.09763 0.85676 0.81325 0.77281 0.78054 1.20572 1.21343 1.19415 1.60806 1.36392 1.00430 1.31576 1.21199 0.93841 0.92363 0.95210 0.87168 1.24038 0.95211 0.94851 0.95514 1.32704 1.15670 1.08973 1.19795 1.06665 0.76933 0.77152 0.74730 1.93542 1.67520 1.86372 1.49064 1.93585 1.76425 1.50850 1.75949 1.30593 1.16067 1.15690 1.04198 0.91991 0.92692 0.94145 0.94193 0.91399 0.93122 0.84117 0.84602 0.78911 0.81649 0.81304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.72 9.63 71.98 0.69 -4.03 16 2 C -0.12 -5.23 5.37 30.60 0.16 -5.07 16 3 C 0.22 9.59 1.84 44.17 0.08 9.67 16 4 H -0.01 -0.70 7.65 -2.39 -0.02 -0.72 16 5 C -0.51 -26.03 8.44 25.60 0.22 -25.81 16 6 H 0.06 2.95 7.81 -2.91 -0.02 2.93 16 7 C 0.01 0.63 5.29 84.65 0.45 1.08 16 8 N -0.92 -49.86 11.30 21.45 0.24 -49.62 16 9 Si 0.95 41.92 29.54 68.60 2.03 43.95 16 10 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 11 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 13 N -0.66 -22.84 6.02 -475.55 -2.86 -25.70 16 14 C 0.09 2.56 2.77 44.48 0.12 2.69 16 15 H 0.11 3.76 7.58 -2.38 -0.02 3.75 16 16 C -0.07 -1.97 9.14 25.99 0.24 -1.73 16 17 C -0.66 -15.76 11.04 68.48 0.76 -15.01 16 18 S 2.46 59.97 6.19 -56.49 -0.35 59.62 16 19 O -0.97 -28.11 18.01 -127.81 -2.30 -30.41 16 20 O -0.97 -30.43 18.02 -127.81 -2.30 -32.73 16 21 C -0.53 -11.78 7.41 72.64 0.54 -11.24 16 22 H 0.06 1.70 6.66 -2.39 -0.02 1.68 16 23 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 24 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.07 3.37 5.95 -2.39 -0.01 3.36 16 27 H 0.26 13.61 8.31 -92.71 -0.77 12.84 16 28 H 0.34 10.10 6.32 -89.69 -0.57 9.53 16 29 H 0.14 3.61 8.02 -2.91 -0.02 3.59 16 30 H 0.19 3.85 8.06 -2.91 -0.02 3.82 16 31 H 0.17 3.11 8.14 -2.39 -0.02 3.09 16 32 H 0.17 3.10 8.09 -2.38 -0.02 3.08 16 Total: -1.00 -65.36 278.36 -1.74 -67.10 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.55 Total: 17.23 kcal Atomic # 6 Polarization: -52.71 SS G_CDS: 3.26 Total: -49.45 kcal Atomic # 7 Polarization: -72.70 SS G_CDS: -2.62 Total: -75.32 kcal Atomic # 8 Polarization: -58.53 SS G_CDS: -4.60 Total: -63.14 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Atomic # 16 Polarization: 59.97 SS G_CDS: -0.35 Total: 59.62 kcal Total: -65.36 -1.74 -67.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084130990.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.306 kcal (2) G-P(sol) polarization free energy of solvation -65.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds