Wall clock time and date at job start Sun Mar 29 2020 22:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47254 * 2 1 4 4 H 1.09002 * 109.47296 * 177.53305 * 3 2 1 5 5 C 1.50699 * 109.47294 * 57.53345 * 3 2 1 6 6 H 1.08000 * 120.00469 * 240.00270 * 5 3 2 7 7 C 1.37879 * 120.00127 * 59.99358 * 5 3 2 8 8 N 1.31516 * 119.99656 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00366 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.46870 * 60.00679 * 9 7 5 11 11 H 1.48500 * 109.47216 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47537 * 300.00693 * 9 7 5 13 13 N 1.46901 * 109.47194 * 297.53420 * 3 2 1 14 14 C 1.46905 * 110.99983 * 274.38781 * 13 3 2 15 15 H 1.08999 * 109.35502 * 35.01996 * 14 13 3 16 16 C 1.49707 * 109.46337 * 275.13924 * 14 13 3 17 17 C 1.30331 * 119.16994 * 221.28181 * 16 14 13 18 18 S 1.77798 * 107.56358 * 0.33367 * 17 16 14 19 19 O 1.42097 * 105.57500 * 259.56473 * 18 17 16 20 20 O 1.42102 * 105.60315 * 129.11169 * 18 17 16 21 21 C 1.54941 * 109.41242 * 154.84896 * 14 13 3 22 22 H 1.08997 * 109.46793 * 174.53584 * 1 2 3 23 23 H 1.08996 * 109.46915 * 294.54101 * 1 2 3 24 24 H 1.09003 * 109.46932 * 54.53583 * 1 2 3 25 25 H 1.09004 * 109.47232 * 240.00554 * 2 1 3 26 26 H 1.08995 * 109.47177 * 120.00209 * 2 1 3 27 27 H 0.97006 * 119.99857 * 180.02562 * 8 7 5 28 28 H 1.00901 * 110.99994 * 150.43884 * 13 3 2 29 29 H 1.08000 * 120.40946 * 41.29970 * 16 14 13 30 30 H 1.08000 * 126.21490 * 180.36031 * 17 16 14 31 31 H 1.08997 * 111.33844 * 27.54049 * 21 14 13 32 32 H 1.08999 * 111.33616 * 262.88025 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1292 1.4428 0.0442 5 6 1.4885 2.1703 1.1987 6 1 0.8723 3.0467 1.0620 7 6 1.7702 1.7174 2.4701 8 7 2.5208 0.6503 2.6367 9 14 1.0859 2.6191 3.9560 10 1 -0.3979 2.6181 3.8955 11 1 1.5316 1.9370 5.1975 12 1 1.5803 4.0193 3.9563 13 7 1.5997 2.1176 -1.2281 14 6 2.5368 1.8674 -2.3314 15 1 2.9358 0.8568 -2.2444 16 6 3.6607 2.8541 -2.2647 17 6 4.1012 3.3908 -3.3676 18 16 3.1385 2.7292 -4.7080 19 8 3.9452 1.7167 -5.2938 20 8 2.6890 3.8559 -5.4483 21 6 1.7924 2.0128 -3.6824 22 1 -0.3633 -1.0230 -0.0979 23 1 -0.3633 0.4268 0.9348 24 1 -0.3633 0.5963 -0.8370 25 1 1.8934 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 2.7187 0.3314 3.5312 28 1 1.4793 3.1073 -1.0734 29 1 4.1011 3.1177 -1.3144 30 1 4.9053 4.1069 -3.4521 31 1 0.9494 2.6987 -3.5990 32 1 1.4744 1.0434 -4.0663 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084130994.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:21 Heat of formation + Delta-G solvation = -43.446622 kcal Electronic energy + Delta-G solvation = -16184.496830 eV Core-core repulsion = 13466.136648 eV Total energy + Delta-G solvation = -2718.360182 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.22308 -36.96680 -35.82086 -35.04414 -32.11882 -30.69855 -29.21274 -26.13625 -23.50935 -23.29568 -20.62300 -19.29883 -18.60674 -17.33948 -16.44549 -16.06056 -15.36291 -15.00334 -14.49977 -14.16122 -13.97531 -13.33663 -13.11438 -12.70126 -12.27793 -12.04293 -11.97698 -11.93825 -11.72079 -11.12898 -10.99701 -10.63435 -10.59649 -10.41500 -10.29235 -10.08004 -9.86145 -9.54428 -8.99962 -8.65783 -7.70193 -6.18405 -4.25302 0.18273 1.45498 2.72689 3.20723 3.26659 3.28682 3.66090 4.19547 4.28580 4.47335 4.58716 5.01569 5.12031 5.16117 5.47611 5.69232 5.73575 5.84340 6.18687 6.35523 6.53682 6.67519 7.00061 7.06283 7.27259 7.52947 7.57312 7.65164 7.96140 8.10413 8.34091 8.80509 9.40528 10.87462 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.040795 B = 0.005982 C = 0.005701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.189120 B = 4679.392226 C = 4910.031812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.105 4.105 3 C 0.210 3.790 4 H 0.008 0.992 5 C -0.521 4.521 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.896 3.104 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.660 5.660 14 C 0.089 3.911 15 H 0.120 0.880 16 C -0.064 4.064 17 C -0.678 4.678 18 S 2.437 3.563 19 O -0.941 6.941 20 O -0.946 6.946 21 C -0.552 4.552 22 H 0.015 0.985 23 H 0.053 0.947 24 H 0.047 0.953 25 H 0.012 0.988 26 H 0.088 0.912 27 H 0.263 0.737 28 H 0.340 0.660 29 H 0.140 0.860 30 H 0.175 0.825 31 H 0.150 0.850 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.164 1.964 -8.818 9.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.144 4.144 3 C 0.103 3.897 4 H 0.025 0.975 5 C -0.560 4.560 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.524 5.524 9 Si 0.723 3.277 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.290 5.290 14 C -0.024 4.024 15 H 0.137 0.863 16 C -0.086 4.086 17 C -0.786 4.786 18 S 2.620 3.380 19 O -0.938 6.938 20 O -0.943 6.943 21 C -0.684 4.684 22 H 0.034 0.966 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.031 0.969 26 H 0.107 0.893 27 H 0.073 0.927 28 H 0.159 0.841 29 H 0.158 0.842 30 H 0.192 0.808 31 H 0.168 0.832 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.356 1.355 -9.795 9.894 hybrid contribution 0.518 1.078 2.281 2.576 sum 0.162 2.433 -7.513 7.899 Atomic orbital electron populations 1.21453 0.97255 0.97396 1.01724 1.21474 0.95398 0.97836 0.99648 1.19304 0.93876 0.91924 0.84610 0.97473 1.21075 1.32402 1.12314 0.90166 0.92117 1.24870 0.94880 0.94944 0.98927 1.69863 1.36999 1.22937 1.22623 0.86599 0.79547 0.79718 0.81812 1.20094 1.21251 1.20322 1.61011 1.44018 1.16734 1.07267 1.21238 0.88922 0.99529 0.92697 0.86288 1.24256 0.92539 0.90644 1.01112 1.32568 1.16278 1.13601 1.16201 1.07398 0.78310 0.75901 0.76428 1.93617 1.65662 1.59313 1.75209 1.93576 1.81873 1.49334 1.69545 1.30631 1.14913 1.13947 1.08868 0.96633 0.92784 0.93400 0.96921 0.89329 0.92662 0.84135 0.84213 0.80766 0.83237 0.83655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.49 9.45 37.16 0.35 -2.14 16 2 C -0.11 -2.30 5.55 -26.73 -0.15 -2.45 16 3 C 0.21 4.59 2.10 -68.87 -0.14 4.45 16 4 H 0.01 0.18 7.54 -51.93 -0.39 -0.21 16 5 C -0.52 -12.73 7.31 -34.44 -0.25 -12.98 16 6 H 0.06 1.47 7.61 -52.49 -0.40 1.07 16 7 C 0.07 1.69 5.30 -17.82 -0.09 1.60 16 8 N -0.89 -23.45 11.35 55.43 0.63 -22.82 16 9 Si 0.90 19.98 29.54 -169.99 -5.02 14.96 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 13 N -0.66 -11.61 5.28 -101.59 -0.54 -12.15 16 14 C 0.09 1.29 2.78 -68.31 -0.19 1.10 16 15 H 0.12 1.77 7.14 -51.93 -0.37 1.40 16 16 C -0.06 -0.89 9.12 -36.32 -0.33 -1.22 16 17 C -0.68 -8.72 11.05 29.20 0.32 -8.40 16 18 S 2.44 30.65 6.19 -107.50 -0.66 29.98 16 19 O -0.94 -14.61 18.01 -57.38 -1.03 -15.65 16 20 O -0.95 -14.49 18.02 -57.38 -1.03 -15.53 16 21 C -0.55 -6.22 7.41 38.18 0.28 -5.94 16 22 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 23 H 0.05 1.21 7.36 -51.93 -0.38 0.83 16 24 H 0.05 0.93 7.52 -51.93 -0.39 0.54 16 25 H 0.01 0.25 7.44 -51.93 -0.39 -0.14 16 26 H 0.09 2.20 6.14 -51.93 -0.32 1.88 16 27 H 0.26 6.74 8.31 -40.82 -0.34 6.41 16 28 H 0.34 5.80 7.95 -39.29 -0.31 5.49 16 29 H 0.14 2.04 7.97 -52.49 -0.42 1.62 16 30 H 0.17 2.01 8.06 -52.49 -0.42 1.58 16 31 H 0.15 1.53 8.09 -51.93 -0.42 1.11 16 32 H 0.15 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 277.17 15.07 4.18 4.18 Total: -1.00 -30.32 277.17 -7.88 -38.20 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -4.19 Total: 4.81 kcal Atomic # 6 Polarization: -25.78 SS G_CDS: -0.20 Total: -25.98 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: 0.09 Total: -34.98 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -2.07 Total: -31.17 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Atomic # 16 Polarization: 30.65 SS G_CDS: -0.66 Total: 29.98 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.32 -7.88 -38.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084130994.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.245 kcal (2) G-P(sol) polarization free energy of solvation -30.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds