Wall clock time and date at job start Sun Mar 29 2020 22:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47254 * 2 1 4 4 H 1.09002 * 109.47296 * 177.53305 * 3 2 1 5 5 C 1.50699 * 109.47294 * 57.53345 * 3 2 1 6 6 H 1.08000 * 120.00469 * 240.00270 * 5 3 2 7 7 C 1.37879 * 120.00127 * 59.99358 * 5 3 2 8 8 N 1.31516 * 119.99656 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00366 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.46870 * 60.00679 * 9 7 5 11 11 H 1.48500 * 109.47216 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47537 * 300.00693 * 9 7 5 13 13 N 1.46901 * 109.47194 * 297.53420 * 3 2 1 14 14 C 1.46905 * 110.99983 * 274.38781 * 13 3 2 15 15 H 1.08999 * 109.35502 * 35.01996 * 14 13 3 16 16 C 1.49707 * 109.46337 * 275.13924 * 14 13 3 17 17 C 1.30331 * 119.16994 * 221.28181 * 16 14 13 18 18 S 1.77798 * 107.56358 * 0.33367 * 17 16 14 19 19 O 1.42097 * 105.57500 * 259.56473 * 18 17 16 20 20 O 1.42102 * 105.60315 * 129.11169 * 18 17 16 21 21 C 1.54941 * 109.41242 * 154.84896 * 14 13 3 22 22 H 1.08997 * 109.46793 * 174.53584 * 1 2 3 23 23 H 1.08996 * 109.46915 * 294.54101 * 1 2 3 24 24 H 1.09003 * 109.46932 * 54.53583 * 1 2 3 25 25 H 1.09004 * 109.47232 * 240.00554 * 2 1 3 26 26 H 1.08995 * 109.47177 * 120.00209 * 2 1 3 27 27 H 0.97006 * 119.99857 * 180.02562 * 8 7 5 28 28 H 1.00901 * 110.99994 * 150.43884 * 13 3 2 29 29 H 1.08000 * 120.40946 * 41.29970 * 16 14 13 30 30 H 1.08000 * 126.21490 * 180.36031 * 17 16 14 31 31 H 1.08997 * 111.33844 * 27.54049 * 21 14 13 32 32 H 1.08999 * 111.33616 * 262.88025 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1292 1.4428 0.0442 5 6 1.4885 2.1703 1.1987 6 1 0.8723 3.0467 1.0620 7 6 1.7702 1.7174 2.4701 8 7 2.5208 0.6503 2.6367 9 14 1.0859 2.6191 3.9560 10 1 -0.3979 2.6181 3.8955 11 1 1.5316 1.9370 5.1975 12 1 1.5803 4.0193 3.9563 13 7 1.5997 2.1176 -1.2281 14 6 2.5368 1.8674 -2.3314 15 1 2.9358 0.8568 -2.2444 16 6 3.6607 2.8541 -2.2647 17 6 4.1012 3.3908 -3.3676 18 16 3.1385 2.7292 -4.7080 19 8 3.9452 1.7167 -5.2938 20 8 2.6890 3.8559 -5.4483 21 6 1.7924 2.0128 -3.6824 22 1 -0.3633 -1.0230 -0.0979 23 1 -0.3633 0.4268 0.9348 24 1 -0.3633 0.5963 -0.8370 25 1 1.8934 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 2.7187 0.3314 3.5312 28 1 1.4793 3.1073 -1.0734 29 1 4.1011 3.1177 -1.3144 30 1 4.9053 4.1069 -3.4521 31 1 0.9494 2.6987 -3.5990 32 1 1.4744 1.0434 -4.0663 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084130994.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:21 Heat of formation + Delta-G solvation = -66.170565 kcal Electronic energy + Delta-G solvation = -16185.482214 eV Core-core repulsion = 13466.136648 eV Total energy + Delta-G solvation = -2719.345566 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.51615 -38.11730 -36.97947 -36.59266 -33.81714 -32.18156 -30.46284 -27.86224 -25.17239 -24.55873 -21.87959 -20.82999 -19.72075 -18.71783 -17.90499 -17.32426 -16.77372 -16.40878 -15.75218 -15.63795 -15.33130 -14.87153 -14.43979 -14.04396 -13.82084 -13.43158 -13.32951 -13.09986 -12.91225 -12.80057 -12.72549 -12.39639 -12.13087 -11.80570 -11.65756 -11.39751 -11.23153 -11.22393 -10.78997 -10.54582 -9.20701 -8.10617 -6.21777 -0.85584 0.35477 1.43126 1.45295 1.50891 1.68458 2.42218 2.63276 3.14844 3.19754 3.36370 3.53406 3.71471 4.10916 4.41697 4.61146 4.64339 4.71184 4.83684 4.84368 4.97769 5.13583 5.32647 5.39762 5.57129 5.71183 5.81801 5.90334 6.28244 6.37399 6.68751 6.97893 7.47069 8.93955 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.040795 B = 0.005982 C = 0.005701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.189120 B = 4679.392226 C = 4910.031812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.104 4.104 3 C 0.216 3.784 4 H -0.018 1.018 5 C -0.526 4.526 6 H 0.061 0.939 7 C 0.021 3.979 8 N -0.914 5.914 9 Si 0.948 3.052 10 H -0.273 1.273 11 H -0.290 1.290 12 H -0.273 1.273 13 N -0.655 5.655 14 C 0.082 3.918 15 H 0.116 0.884 16 C -0.075 4.075 17 C -0.668 4.668 18 S 2.463 3.537 19 O -0.969 6.969 20 O -0.971 6.971 21 C -0.530 4.530 22 H 0.032 0.968 23 H 0.028 0.972 24 H 0.061 0.939 25 H 0.030 0.970 26 H 0.056 0.944 27 H 0.260 0.740 28 H 0.344 0.656 29 H 0.129 0.871 30 H 0.188 0.812 31 H 0.168 0.832 32 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.114 2.380 -9.785 10.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.143 4.143 3 C 0.107 3.893 4 H -0.001 1.001 5 C -0.564 4.564 6 H 0.079 0.921 7 C -0.178 4.178 8 N -0.553 5.553 9 Si 0.774 3.226 10 H -0.198 1.198 11 H -0.216 1.216 12 H -0.199 1.199 13 N -0.285 5.285 14 C -0.030 4.030 15 H 0.134 0.866 16 C -0.097 4.097 17 C -0.776 4.776 18 S 2.648 3.352 19 O -0.966 6.966 20 O -0.968 6.968 21 C -0.663 4.663 22 H 0.051 0.949 23 H 0.047 0.953 24 H 0.080 0.920 25 H 0.049 0.951 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.162 0.838 29 H 0.147 0.853 30 H 0.205 0.795 31 H 0.186 0.814 32 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -1.296 1.795 -10.790 11.015 hybrid contribution 0.835 0.957 2.537 2.837 sum -0.461 2.751 -8.253 8.712 Atomic orbital electron populations 1.21338 0.96044 0.98565 1.00855 1.21380 0.96392 0.97599 0.98929 1.19051 0.92151 0.92259 0.85805 1.00072 1.21421 1.31629 1.12176 0.91187 0.92080 1.25527 0.95378 0.95616 1.01317 1.69994 1.38397 1.24242 1.22690 0.85769 0.78946 0.78768 0.79082 1.19801 1.21612 1.19882 1.60874 1.44796 1.16697 1.06134 1.21345 0.89034 0.99594 0.93012 0.86612 1.24091 0.93200 0.91352 1.01052 1.32745 1.16157 1.12959 1.15755 1.06631 0.77967 0.74809 0.75838 1.93582 1.66890 1.59977 1.76152 1.93545 1.82236 1.50421 1.70559 1.30588 1.14190 1.15874 1.05638 0.94886 0.95294 0.92030 0.95125 0.92571 0.93070 0.83753 0.85322 0.79508 0.81371 0.80810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.38 9.45 71.98 0.68 -3.70 16 2 C -0.10 -4.50 5.55 30.59 0.17 -4.33 16 3 C 0.22 9.35 2.10 44.17 0.09 9.45 16 4 H -0.02 -0.88 7.54 -2.39 -0.02 -0.90 16 5 C -0.53 -25.55 7.31 25.60 0.19 -25.37 16 6 H 0.06 2.90 7.61 -2.91 -0.02 2.88 16 7 C 0.02 1.09 5.30 84.65 0.45 1.54 16 8 N -0.91 -49.18 11.35 21.45 0.24 -48.93 16 9 Si 0.95 40.96 29.54 68.60 2.03 42.98 16 10 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 11 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 12 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 13 N -0.66 -21.93 5.28 -475.32 -2.51 -24.44 16 14 C 0.08 2.23 2.78 44.52 0.12 2.35 16 15 H 0.12 3.24 7.14 -2.39 -0.02 3.22 16 16 C -0.08 -2.01 9.12 26.03 0.24 -1.77 16 17 C -0.67 -16.06 11.05 68.47 0.76 -15.31 16 18 S 2.46 56.66 6.19 -56.49 -0.35 56.31 16 19 O -0.97 -28.39 18.01 -127.81 -2.30 -30.69 16 20 O -0.97 -27.73 18.02 -127.81 -2.30 -30.03 16 21 C -0.53 -10.18 7.41 72.65 0.54 -9.64 16 22 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.03 1.26 7.36 -2.39 -0.02 1.24 16 24 H 0.06 2.24 7.52 -2.39 -0.02 2.22 16 25 H 0.03 1.18 7.44 -2.38 -0.02 1.16 16 26 H 0.06 2.81 6.14 -2.39 -0.01 2.79 16 27 H 0.26 13.58 8.31 -92.70 -0.77 12.81 16 28 H 0.34 11.14 7.95 -89.69 -0.71 10.43 16 29 H 0.13 3.74 7.97 -2.91 -0.02 3.72 16 30 H 0.19 3.97 8.06 -2.91 -0.02 3.95 16 31 H 0.17 2.74 8.09 -2.39 -0.02 2.73 16 32 H 0.17 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -63.82 277.17 -1.55 -65.37 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.41 Total: 16.22 kcal Atomic # 6 Polarization: -50.02 SS G_CDS: 3.24 Total: -46.78 kcal Atomic # 7 Polarization: -71.11 SS G_CDS: -2.26 Total: -73.38 kcal Atomic # 8 Polarization: -56.12 SS G_CDS: -4.60 Total: -60.73 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.98 kcal Atomic # 16 Polarization: 56.66 SS G_CDS: -0.35 Total: 56.31 kcal Total: -63.82 -1.55 -65.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084130994.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.798 kcal (2) G-P(sol) polarization free energy of solvation -63.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds