Wall clock time and date at job start Sun Mar 29 2020 23:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99685 * 2 1 4 4 H 1.48501 * 109.47139 * 239.99676 * 3 2 1 5 5 H 1.48498 * 109.47330 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46939 * 120.00246 * 3 2 1 7 7 C 1.37875 * 119.99936 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99973 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00386 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47404 * 180.02562 * 9 7 2 11 11 N 1.46502 * 109.47244 * 179.97438 * 10 9 7 12 12 N 1.29009 * 126.48914 * 274.86238 * 11 10 9 13 13 N 1.28680 * 109.05518 * 180.23418 * 12 11 10 14 14 N 1.28824 * 109.63908 * 359.75731 * 13 12 11 15 15 C 1.31953 * 107.87789 * 0.02562 * 14 13 12 16 16 C 1.48065 * 126.80178 * 179.97438 * 15 14 13 17 17 C 1.39869 * 120.91598 * 340.84075 * 16 15 14 18 18 C 1.38000 * 119.00755 * 179.97438 * 17 16 15 19 19 N 1.31908 * 120.88929 * 0.02803 * 18 17 16 20 20 C 1.31906 * 122.04152 * 359.97438 * 19 18 17 21 21 C 1.37997 * 120.89073 * 359.97438 * 20 19 18 22 22 H 0.97000 * 120.00226 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46996 * 59.99716 * 9 7 2 24 24 H 1.09004 * 109.46523 * 300.00243 * 9 7 2 25 25 H 1.09001 * 109.47282 * 59.99884 * 10 9 7 26 26 H 1.09004 * 109.47473 * 299.99654 * 10 9 7 27 27 H 1.07998 * 120.49824 * 359.97438 * 17 16 15 28 28 H 1.07997 * 119.55486 * 180.30352 * 18 17 16 29 29 H 1.08002 * 119.55901 * 180.02562 * 20 19 18 30 30 H 1.08002 * 120.49776 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 7 1.5129 -4.9308 -0.0020 12 7 1.0527 -5.5514 1.0312 13 7 0.4716 -6.6334 0.6471 14 7 0.5403 -6.7297 -0.6357 15 6 1.1884 -5.6727 -1.0873 16 6 1.5030 -5.3620 -2.5003 17 6 1.4814 -6.3620 -3.4780 18 6 1.7807 -6.0284 -4.7832 19 7 2.0842 -4.7876 -5.1125 20 6 2.1161 -3.8151 -4.2219 21 6 1.8292 -4.0603 -2.8946 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5563 -0.8920 24 1 0.6241 -2.5574 0.8880 25 1 2.8713 -3.6047 0.8890 26 1 2.8727 -3.6040 -0.8910 27 1 1.2342 -7.3800 -3.2155 28 1 1.7618 -6.7926 -5.5461 29 1 2.3693 -2.8132 -4.5359 30 1 1.8568 -3.2591 -2.1708 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097050381.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:45:07 Heat of formation + Delta-G solvation = 147.003122 kcal Electronic energy + Delta-G solvation = -16939.157654 eV Core-core repulsion = 14158.197543 eV Total energy + Delta-G solvation = -2780.960111 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.097 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.82032 -40.05492 -36.13955 -33.95999 -33.34760 -31.36971 -30.98822 -30.29489 -26.14211 -24.72225 -23.81842 -22.85162 -22.10720 -21.08789 -17.81903 -17.18535 -16.59374 -16.25399 -16.00321 -15.77480 -14.72334 -14.23615 -14.20151 -13.92868 -13.23711 -12.88664 -12.72462 -12.19429 -11.97364 -11.54973 -11.22627 -11.19480 -11.01319 -10.89958 -10.63842 -10.52822 -9.85852 -9.66187 -9.58409 -9.22296 -9.14544 -8.69871 -6.33922 -4.43143 0.56345 1.07436 1.85027 2.31094 2.54332 3.14973 3.21896 3.22337 3.74320 3.87106 4.19761 4.39539 4.41338 4.86463 4.92887 5.02788 5.07007 5.27553 5.50519 5.52582 5.62260 5.76466 5.83203 5.90451 6.01255 6.13360 6.42232 6.57115 7.07482 7.19321 7.57479 7.86402 7.87549 8.61438 8.84958 9.24781 10.76639 Molecular weight = 245.10amu Principal moments of inertia in cm(-1) A = 0.020026 B = 0.007573 C = 0.005803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.867040 B = 3696.496347 C = 4824.003369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.067 3.933 3 Si 0.901 3.099 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.064 0.936 9 C 0.011 3.989 10 C 0.096 3.904 11 N -0.275 5.275 12 N -0.082 5.082 13 N -0.090 5.090 14 N -0.294 5.294 15 C 0.206 3.794 16 C 0.022 3.978 17 C -0.130 4.130 18 C 0.096 3.904 19 N -0.478 5.478 20 C 0.108 3.892 21 C -0.158 4.158 22 H 0.268 0.732 23 H 0.030 0.970 24 H 0.035 0.965 25 H 0.107 0.893 26 H 0.106 0.894 27 H 0.146 0.854 28 H 0.162 0.838 29 H 0.167 0.833 30 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.245 -7.503 -7.267 11.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.137 4.137 3 Si 0.728 3.272 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.577 4.577 8 H 0.083 0.917 9 C -0.027 4.027 10 C -0.022 4.022 11 N -0.077 5.077 12 N -0.067 5.067 13 N -0.083 5.083 14 N -0.146 5.146 15 C -0.069 4.069 16 C 0.011 3.989 17 C -0.152 4.152 18 C -0.060 4.060 19 N -0.187 5.187 20 C -0.048 4.048 21 C -0.179 4.179 22 H 0.077 0.923 23 H 0.048 0.952 24 H 0.054 0.946 25 H 0.125 0.875 26 H 0.124 0.876 27 H 0.164 0.836 28 H 0.179 0.821 29 H 0.184 0.816 30 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 4.706 -8.018 -7.032 11.657 hybrid contribution 0.508 1.444 0.487 1.607 sum 5.214 -6.574 -6.545 10.641 Atomic orbital electron populations 1.69946 1.06242 1.27674 1.48182 1.24990 0.94884 0.99610 0.94251 0.86502 0.79519 0.82236 0.78936 1.19826 1.21027 1.19917 1.20810 0.93134 0.89501 1.54220 0.91744 1.19578 0.93867 0.89881 0.99418 1.23258 0.96301 0.77325 1.05364 1.49176 1.35605 1.19514 1.03384 1.78816 1.11383 1.03440 1.13100 1.78486 1.15756 1.10431 1.03610 1.75165 1.16949 1.18699 1.03800 1.23705 1.01078 0.90766 0.91338 1.17741 0.99574 0.94594 0.87000 1.22195 0.99377 1.00338 0.93286 1.22723 0.95209 0.93698 0.94420 1.67638 1.12016 1.00876 1.38188 1.22791 0.94836 0.98774 0.88401 1.23031 0.98410 0.96784 0.99671 0.92255 0.95224 0.94621 0.87523 0.87613 0.83584 0.82070 0.81578 0.81620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.19 13.29 55.43 0.74 -23.46 16 2 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 19.41 29.54 -169.99 -5.02 14.39 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.54 -12.94 9.11 -34.44 -0.31 -13.25 16 8 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.01 0.24 4.66 -27.89 -0.13 0.11 16 10 C 0.10 1.70 5.49 -4.04 -0.02 1.67 16 11 N -0.27 -5.09 3.37 -58.76 -0.20 -5.29 16 12 N -0.08 -1.65 13.27 60.35 0.80 -0.85 16 13 N -0.09 -1.80 13.42 60.35 0.81 -0.99 16 14 N -0.29 -5.53 12.31 32.35 0.40 -5.14 16 15 C 0.21 3.63 7.79 -155.12 -1.21 2.42 16 16 C 0.02 0.34 5.88 -104.65 -0.62 -0.28 16 17 C -0.13 -1.61 9.82 -39.06 -0.38 -2.00 16 18 C 0.10 1.09 11.17 -17.61 -0.20 0.89 16 19 N -0.48 -6.28 10.34 -13.34 -0.14 -6.42 16 20 C 0.11 1.43 11.17 -17.61 -0.20 1.23 16 21 C -0.16 -2.30 8.66 -39.06 -0.34 -2.64 16 22 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 23 H 0.03 0.70 7.06 -51.93 -0.37 0.33 16 24 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.11 1.76 8.14 -51.93 -0.42 1.34 16 26 H 0.11 1.61 5.66 -51.93 -0.29 1.32 16 27 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 28 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.17 1.83 8.06 -52.49 -0.42 1.41 16 30 H 0.17 2.64 3.58 -52.49 -0.19 2.45 16 LS Contribution 268.88 15.07 4.05 4.05 Total: -1.00 -28.88 268.88 -4.57 -33.45 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -2.50 Total: 0.48 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -3.50 Total: -10.23 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: 2.41 Total: -42.14 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.88 -4.57 -33.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097050381.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.450 kcal (2) G-P(sol) polarization free energy of solvation -28.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds