Wall clock time and date at job start Sun Mar 29 2020 23:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47516 * 2 1 4 4 C 1.50703 * 109.47302 * 119.99907 * 2 1 3 5 5 H 1.08004 * 120.00026 * 119.99777 * 4 2 1 6 6 C 1.37878 * 119.99838 * 299.99866 * 4 2 1 7 7 N 1.31513 * 119.99887 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99954 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47247 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47093 * 120.00255 * 8 6 4 11 11 H 1.48497 * 109.47042 * 240.00004 * 8 6 4 12 12 N 1.46506 * 109.47262 * 239.99662 * 2 1 3 13 13 C 1.34777 * 119.99873 * 84.99703 * 12 2 1 14 14 O 1.21507 * 119.99802 * 0.28254 * 13 12 2 15 15 C 1.48216 * 119.99997 * 179.97438 * 13 12 2 16 16 C 1.39370 * 119.56043 * 180.02562 * 15 13 12 17 17 C 1.38359 * 119.20257 * 179.97438 * 16 15 13 18 18 C 1.39973 * 118.35152 * 359.97438 * 17 16 15 19 19 C 1.43203 * 120.46765 * 180.02562 * 18 17 16 20 20 N 8.97345 * 108.78710 * 246.89606 * 2 1 3 21 21 C 1.39853 * 119.06438 * 0.02562 * 18 17 16 22 22 N 1.31372 * 120.70552 * 359.74230 * 21 18 17 23 23 H 1.09002 * 109.47121 * 300.00317 * 1 2 3 24 24 H 1.09001 * 109.47093 * 60.00104 * 1 2 3 25 25 H 1.09002 * 109.46901 * 180.02562 * 1 2 3 26 26 H 0.97004 * 119.99992 * 179.97438 * 7 6 4 27 27 H 0.96999 * 120.00080 * 265.00307 * 12 2 1 28 28 H 1.07995 * 120.40180 * 359.95463 * 16 15 13 29 29 H 1.07995 * 120.82610 * 180.02562 * 17 16 15 30 30 H 1.08000 * 119.65257 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6033 8 14 2.3214 -1.1202 4.0080 9 1 3.1465 -2.2869 3.6039 10 1 3.1467 -0.1872 4.8165 11 1 1.1661 -1.5865 4.8161 12 7 2.0184 -0.6907 -1.1962 13 6 2.1470 -0.0184 -2.3572 14 8 1.8628 1.1618 -2.4105 15 6 2.6417 -0.7170 -3.5672 16 6 2.7717 -0.0128 -4.7628 17 6 3.2346 -0.6721 -5.8877 18 6 3.5563 -2.0299 -5.7771 19 6 4.0399 -2.7564 -6.9124 20 7 4.4199 -3.3336 -7.8140 21 6 3.3987 -2.6670 -4.5421 22 7 2.9602 -2.0038 -3.4963 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7090 1.1616 3.4844 27 1 2.2490 -1.6319 -1.1526 28 1 2.5139 1.0348 -4.8109 29 1 3.3459 -0.1519 -6.8275 30 1 3.6444 -3.7143 -4.4459 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104199134.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:36:46 Heat of formation + Delta-G solvation = 5.535860 kcal Electronic energy + Delta-G solvation = -16257.265602 eV Core-core repulsion = 13437.878259 eV Total energy + Delta-G solvation = -2819.387343 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.72871 -40.05241 -37.73921 -36.76395 -34.50016 -33.73071 -32.78219 -30.77567 -27.33697 -26.62486 -24.75706 -23.27830 -21.41629 -20.20786 -19.68330 -18.01143 -17.82991 -16.94836 -16.28307 -16.16965 -15.71654 -15.34380 -15.23215 -14.65283 -14.39585 -14.33683 -14.11347 -14.06146 -13.66109 -13.27631 -12.97814 -12.85829 -12.72994 -12.26195 -12.11030 -11.27560 -11.08843 -11.07364 -10.64371 -10.57504 -10.32950 -9.75710 -8.16009 -6.32834 -0.87165 0.14104 1.42619 1.46936 1.48278 1.49442 1.60270 2.16427 2.25441 2.47227 2.63821 2.85594 3.14608 3.16824 3.64933 3.83294 3.90244 4.09255 4.69767 4.74094 4.80825 4.89415 4.95080 5.09877 5.35043 5.43419 5.59977 5.69337 5.88754 6.10607 6.28867 6.55968 6.73680 6.93826 7.30223 7.45633 8.90558 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.040810 B = 0.004629 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.948891 B = 6046.796682 C = 6544.893711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.267 3.733 3 H 0.007 0.993 4 C -0.547 4.547 5 H 0.071 0.929 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.972 3.028 9 H -0.261 1.261 10 H -0.283 1.283 11 H -0.278 1.278 12 N -0.682 5.682 13 C 0.545 3.455 14 O -0.580 6.580 15 C 0.100 3.900 16 C -0.115 4.115 17 C -0.007 4.007 18 C -0.059 4.059 19 C 0.288 3.712 20 N -0.441 5.441 21 C 0.159 3.841 22 N -0.474 5.474 23 H 0.069 0.931 24 H 0.017 0.983 25 H 0.039 0.961 26 H 0.266 0.734 27 H 0.410 0.590 28 H 0.162 0.838 29 H 0.189 0.811 30 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.285 -6.047 -14.348 16.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.164 3.836 3 H 0.025 0.975 4 C -0.585 4.585 5 H 0.089 0.911 6 C -0.184 4.184 7 N -0.554 5.554 8 Si 0.796 3.204 9 H -0.185 1.185 10 H -0.209 1.209 11 H -0.204 1.204 12 N -0.329 5.329 13 C 0.330 3.670 14 O -0.461 6.461 15 C -0.037 4.037 16 C -0.136 4.136 17 C -0.035 4.035 18 C -0.065 4.065 19 C -0.028 4.028 20 N -0.117 5.117 21 C -0.005 4.005 22 N -0.185 5.185 23 H 0.088 0.912 24 H 0.036 0.964 25 H 0.058 0.942 26 H 0.075 0.925 27 H 0.246 0.754 28 H 0.180 0.820 29 H 0.206 0.794 30 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 4.470 -6.394 -14.757 16.692 hybrid contribution 0.090 0.203 0.663 0.699 sum 4.560 -6.191 -14.094 16.055 Atomic orbital electron populations 1.21907 0.97904 0.99588 0.99937 1.18487 0.91413 0.92183 0.81526 0.97511 1.21557 1.32616 1.13563 0.90791 0.91051 1.25759 0.94841 0.95571 1.02189 1.70044 1.36944 1.23837 1.24608 0.85298 0.78108 0.78529 0.78416 1.18525 1.20892 1.20392 1.46251 1.62735 1.14699 1.09257 1.18516 0.78532 0.86147 0.83807 1.90729 1.53321 1.16683 1.85392 1.21301 0.97480 0.90892 0.94014 1.22172 0.97561 1.02853 0.90965 1.21976 0.90298 0.91425 0.99786 1.17118 1.05106 0.94058 0.90171 1.25161 0.92717 0.92737 0.92222 1.81338 1.09913 1.09290 1.11157 1.23421 0.90739 1.01211 0.85104 1.67666 1.10789 1.07618 1.32382 0.91188 0.96439 0.94182 0.92479 0.75355 0.82019 0.79396 0.78242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.72 9.26 71.98 0.67 -6.06 16 2 C 0.27 13.73 2.56 44.24 0.11 13.85 16 3 H 0.01 0.42 7.57 -2.39 -0.02 0.40 16 4 C -0.55 -28.89 8.73 25.60 0.22 -28.67 16 5 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 6 C 0.02 0.88 5.30 84.66 0.45 1.33 16 7 N -0.92 -51.76 11.32 21.45 0.24 -51.52 16 8 Si 0.97 41.66 29.54 68.60 2.03 43.69 16 9 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 10 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 12 N -0.68 -28.83 5.06 -448.61 -2.27 -31.10 16 13 C 0.55 21.45 7.78 86.90 0.68 22.13 16 14 O -0.58 -26.73 15.97 -3.74 -0.06 -26.79 16 15 C 0.10 2.82 6.75 41.93 0.28 3.10 16 16 C -0.11 -2.34 9.61 22.57 0.22 -2.12 16 17 C -0.01 -0.09 9.90 22.72 0.22 0.13 16 18 C -0.06 -0.81 5.75 -21.22 -0.12 -0.93 16 19 C 0.29 4.46 15.36 88.33 1.36 5.82 16 20 N -0.44 -9.09 18.54 19.00 0.35 -8.74 16 21 C 0.16 2.55 10.91 85.15 0.93 3.48 16 22 N -0.47 -11.51 9.52 -183.87 -1.75 -13.26 16 23 H 0.07 3.81 6.07 -2.39 -0.01 3.80 16 24 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 27 H 0.41 15.58 7.86 -92.71 -0.73 14.85 16 28 H 0.16 3.26 7.63 -2.91 -0.02 3.23 16 29 H 0.19 1.03 8.06 -2.91 -0.02 1.01 16 30 H 0.20 1.94 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -67.19 280.75 4.02 -63.17 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 0.46 Total: 12.49 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: 5.02 Total: 12.06 kcal Atomic # 7 Polarization: -101.19 SS G_CDS: -3.42 Total: -104.61 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.06 Total: -26.79 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -67.19 4.02 -63.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104199134.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.705 kcal (2) G-P(sol) polarization free energy of solvation -67.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds