Wall clock time and date at job start Sun Mar 29 2020 22:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99694 * 2 1 4 4 H 1.48507 * 109.47195 * 89.99888 * 3 2 1 5 5 H 1.48492 * 109.47572 * 209.99867 * 3 2 1 6 6 H 1.48500 * 109.47375 * 330.00567 * 3 2 1 7 7 C 1.38806 * 120.00195 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00127 * 165.37473 * 7 2 1 9 9 N 1.36932 * 120.00172 * 345.37219 * 7 2 1 10 10 C 1.46493 * 120.00422 * 308.60652 * 9 7 2 11 11 C 1.53004 * 117.49561 * 3.01416 * 10 9 7 12 12 C 1.52996 * 59.99875 * 252.51034 * 11 10 9 13 13 C 1.46505 * 119.99685 * 128.60192 * 9 7 2 14 14 H 1.09000 * 109.63933 * 180.43143 * 13 9 7 15 15 C 1.53878 * 109.64395 * 60.00695 * 13 9 7 16 16 C 1.55055 * 106.62105 * 192.96434 * 15 13 9 17 17 S 1.83292 * 102.56669 * 42.42843 * 16 15 13 18 18 O 1.42105 * 109.35140 * 90.18662 * 17 16 15 19 19 O 1.42095 * 109.35486 * 223.25267 * 17 16 15 20 20 C 1.54160 * 109.64995 * 300.72469 * 13 9 7 21 21 H 0.97003 * 119.99285 * 174.52014 * 1 2 3 22 22 H 1.09005 * 115.55522 * 148.72107 * 10 9 7 23 23 H 1.09003 * 117.49917 * 0.02562 * 11 10 9 24 24 H 1.09002 * 117.49502 * 145.02345 * 11 10 9 25 25 H 1.08999 * 117.50078 * 252.50762 * 12 11 10 26 26 H 1.08999 * 117.49828 * 107.49259 * 12 11 10 27 27 H 1.09000 * 110.02834 * 312.24917 * 15 13 9 28 28 H 1.08998 * 110.02899 * 73.62836 * 15 13 9 29 29 H 1.08996 * 110.78916 * 160.69769 * 16 15 13 30 30 H 1.09000 * 110.78689 * 283.97178 * 16 15 13 31 31 H 1.08998 * 110.32513 * 266.66533 * 20 13 9 32 32 H 1.09000 * 110.31515 * 28.86256 * 20 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 1.4001 5 1 3.5477 1.4404 -0.7000 6 1 1.4475 2.6527 -0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0641 -1.2171 -0.2367 9 7 1.3590 -2.3689 0.2984 10 6 0.5529 -2.4663 1.5178 11 6 0.4208 -1.2089 2.3794 12 6 1.2856 -2.3767 2.8579 13 6 1.4682 -3.5200 -0.6013 14 1 0.8814 -4.3498 -0.2075 15 6 2.9429 -3.9419 -0.7248 16 6 3.0245 -4.9235 -1.9223 17 16 1.9484 -4.1207 -3.1701 18 8 2.7295 -3.2456 -3.9723 19 8 1.1284 -5.1036 -3.7870 20 6 0.9449 -3.1364 -1.9997 21 1 -0.4849 -0.8363 -0.0802 22 1 -0.3100 -3.1297 1.4593 23 1 0.9332 -0.3091 2.0388 24 1 -0.5293 -1.0448 2.8879 25 1 0.9045 -2.9810 3.6812 26 1 2.3673 -2.2455 2.8324 27 1 3.5664 -3.0684 -0.9151 28 1 3.2666 -4.4395 0.1894 29 1 4.0482 -5.0032 -2.2881 30 1 2.6366 -5.9039 -1.6459 31 1 -0.1095 -3.3962 -2.0938 32 1 1.0905 -2.0712 -2.1792 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109768253.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:33 Heat of formation + Delta-G solvation = -20.901029 kcal Electronic energy + Delta-G solvation = -16801.541754 eV Core-core repulsion = 14084.159222 eV Total energy + Delta-G solvation = -2717.382532 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -37.90635 -36.61545 -35.68449 -35.32912 -32.46204 -30.53573 -28.39202 -24.70415 -23.89684 -21.21705 -20.60844 -20.02534 -18.43437 -17.03917 -16.35104 -16.22993 -15.20980 -15.12537 -14.24706 -13.93506 -13.69942 -13.49668 -13.18434 -12.48160 -12.10669 -11.81835 -11.77894 -11.63170 -11.48486 -11.21183 -10.96927 -10.68062 -10.28175 -10.26625 -10.18316 -9.86790 -9.69251 -9.42208 -9.13812 -8.26762 -6.88729 -6.09535 -3.78668 0.49091 2.95772 3.38210 3.41945 3.56770 4.00436 4.30373 4.42529 4.76727 4.96905 5.01721 5.17547 5.20824 5.37417 5.45042 5.52644 5.84547 5.92332 6.05903 6.16300 6.20606 6.23373 6.49436 6.56555 6.68550 6.73986 7.05028 7.47159 8.05525 8.48040 8.92747 9.57248 10.06195 10.98738 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.025920 B = 0.009434 C = 0.007956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.983568 B = 2967.430665 C = 3518.422327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.002 3.998 3 Si 1.063 2.937 4 H -0.288 1.288 5 H -0.287 1.287 6 H -0.285 1.285 7 C -0.372 4.372 8 H 0.052 0.948 9 N -0.547 5.547 10 C 0.118 3.882 11 C -0.163 4.163 12 C -0.232 4.232 13 C 0.185 3.815 14 H 0.069 0.931 15 C -0.128 4.128 16 C -0.587 4.587 17 S 2.373 3.627 18 O -0.947 6.947 19 O -0.961 6.961 20 C -0.582 4.582 21 H 0.276 0.724 22 H 0.082 0.918 23 H 0.121 0.879 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.123 0.877 32 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.993 -7.140 0.658 7.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.205 4.205 3 Si 0.891 3.109 4 H -0.215 1.215 5 H -0.213 1.213 6 H -0.211 1.211 7 C -0.501 4.501 8 H 0.070 0.930 9 N -0.265 5.265 10 C 0.010 3.990 11 C -0.201 4.201 12 C -0.273 4.273 13 C 0.076 3.924 14 H 0.088 0.912 15 C -0.168 4.168 16 C -0.717 4.717 17 S 2.558 3.442 18 O -0.944 6.944 19 O -0.958 6.958 20 C -0.716 4.716 21 H 0.087 0.913 22 H 0.100 0.900 23 H 0.139 0.861 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.102 0.898 27 H 0.111 0.889 28 H 0.103 0.897 29 H 0.145 0.855 30 H 0.146 0.854 31 H 0.141 0.859 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.768 -5.567 -0.336 6.227 hybrid contribution 0.211 -1.618 0.829 1.831 sum 2.980 -7.186 0.493 7.795 Atomic orbital electron populations 1.70728 1.06547 1.31356 1.43643 1.26205 0.96850 1.02059 0.95430 0.83556 0.74947 0.75462 0.76885 1.21500 1.21254 1.21118 1.19684 0.92967 0.85553 1.51938 0.93013 1.43339 1.56155 1.09736 1.17277 1.21035 0.94670 0.99975 0.83302 1.23297 0.99662 0.94941 1.02245 1.23415 0.99068 1.04865 0.99929 1.20774 0.92454 0.91660 0.87552 0.91242 1.22659 1.00257 0.97539 0.96371 1.30539 1.15200 1.10219 1.15785 1.09387 0.78562 0.77586 0.78639 1.93578 1.69733 1.65054 1.66032 1.93541 1.67609 1.59902 1.74733 1.30857 1.12007 1.16348 1.12345 0.91256 0.90043 0.86143 0.91301 0.91470 0.89780 0.88926 0.89663 0.85524 0.85383 0.85867 0.82871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.71 11.89 55.49 0.66 -23.05 16 2 C 0.00 0.05 3.13 -17.43 -0.05 -0.01 16 3 Si 1.06 23.42 29.80 -169.99 -5.06 18.35 16 4 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.37 -9.03 7.14 -15.06 -0.11 -9.14 16 8 H 0.05 1.29 6.86 -52.48 -0.36 0.93 16 9 N -0.55 -11.83 2.29 -156.95 -0.36 -12.19 16 10 C 0.12 2.46 5.39 -67.93 -0.37 2.10 16 11 C -0.16 -3.54 8.23 -26.73 -0.22 -3.76 16 12 C -0.23 -4.50 10.36 -26.73 -0.28 -4.78 16 13 C 0.18 3.29 3.07 -66.86 -0.21 3.08 16 14 H 0.07 1.09 7.93 -51.93 -0.41 0.68 16 15 C -0.13 -1.99 5.90 -25.19 -0.15 -2.14 16 16 C -0.59 -7.52 7.31 38.24 0.28 -7.24 16 17 S 2.37 37.71 6.10 -107.50 -0.66 37.05 16 18 O -0.95 -18.50 18.15 -57.73 -1.05 -19.55 16 19 O -0.96 -17.35 18.15 -57.73 -1.05 -18.39 16 20 C -0.58 -10.17 6.83 37.76 0.26 -9.91 16 21 H 0.28 7.44 7.08 -40.82 -0.29 7.15 16 22 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 23 H 0.12 2.97 4.94 -51.93 -0.26 2.71 16 24 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 25 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 27 H 0.09 1.60 6.75 -51.93 -0.35 1.25 16 28 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.13 1.42 8.14 -51.93 -0.42 0.99 16 30 H 0.13 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.12 1.97 8.14 -51.93 -0.42 1.55 16 32 H 0.15 3.17 7.05 -51.93 -0.37 2.80 16 LS Contribution 270.79 15.07 4.08 4.08 Total: -1.00 -30.57 270.79 -8.49 -39.06 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -4.21 Total: 6.44 kcal Atomic # 6 Polarization: -30.96 SS G_CDS: -0.84 Total: -31.80 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.30 Total: -35.24 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -2.10 Total: -37.94 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -5.06 Total: 18.35 kcal Atomic # 16 Polarization: 37.71 SS G_CDS: -0.66 Total: 37.05 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.57 -8.49 -39.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109768253.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.154 kcal (2) G-P(sol) polarization free energy of solvation -30.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds