Wall clock time and date at job start Sun Mar 29 2020 22:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86806 * 120.00424 * 2 1 4 4 H 1.48494 * 109.47197 * 269.99814 * 3 2 1 5 5 H 1.48500 * 109.46526 * 29.99802 * 3 2 1 6 6 H 1.48499 * 109.46904 * 149.99497 * 3 2 1 7 7 C 1.38820 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99615 * 168.07773 * 7 2 1 9 9 N 1.36929 * 120.00004 * 347.80896 * 7 2 1 10 10 C 1.46503 * 119.99715 * 307.97232 * 9 7 2 11 11 C 1.52993 * 117.50100 * 1.84831 * 10 9 7 12 12 C 1.53004 * 117.49882 * 293.18962 * 10 9 7 13 13 C 1.46497 * 120.00201 * 127.97570 * 9 7 2 14 14 H 1.09006 * 110.01461 * 179.29573 * 13 9 7 15 15 C 1.53880 * 110.02742 * 300.67598 * 13 9 7 16 16 C 1.54159 * 108.70608 * 166.47292 * 15 13 9 17 17 S 1.82919 * 105.08610 * 332.08920 * 16 15 13 18 18 O 1.42107 * 109.35207 * 115.51970 * 17 16 15 19 19 O 1.42095 * 109.35498 * 248.72828 * 17 16 15 20 20 C 1.55041 * 110.02969 * 57.91649 * 13 9 7 21 21 H 0.97002 * 120.00212 * 355.32398 * 1 2 3 22 22 H 1.09005 * 115.54907 * 147.52630 * 10 9 7 23 23 H 1.09009 * 117.49899 * 0.02562 * 11 10 9 24 24 H 1.09005 * 117.49706 * 145.01620 * 11 10 9 25 25 H 1.09003 * 117.49704 * 214.98572 * 12 10 9 26 26 H 1.08999 * 117.49700 * 0.02562 * 12 10 9 27 27 H 1.08998 * 109.64354 * 286.32467 * 15 13 9 28 28 H 1.09001 * 109.64275 * 46.61993 * 15 13 9 29 29 H 1.09003 * 110.31907 * 90.99415 * 16 15 13 30 30 H 1.08999 * 110.31998 * 213.08932 * 16 15 13 31 31 H 1.09006 * 110.79201 * 316.54611 * 20 13 9 32 32 H 1.09006 * 110.79428 * 80.00778 * 20 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4400 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0727 -1.2124 -0.1927 9 7 1.3486 -2.3746 0.2515 10 6 0.5093 -2.5008 1.4456 11 6 0.3780 -1.2738 2.3498 12 6 1.2083 -2.4760 2.8063 13 6 1.4803 -3.5025 -0.6740 14 1 0.8992 -4.3512 -0.3129 15 6 0.9982 -3.0925 -2.0766 16 6 1.4575 -4.1603 -3.0891 17 16 2.9769 -4.8786 -2.3671 18 8 2.7511 -6.2479 -2.0612 19 8 4.0968 -4.5029 -3.1569 20 6 2.9716 -3.9020 -0.8156 21 1 -0.4850 0.8372 0.0685 22 1 -0.3643 -3.1442 1.3402 23 1 0.9159 -0.3723 2.0562 24 1 -0.5819 -1.1099 2.8397 25 1 0.7944 -3.1027 3.5963 26 1 2.2926 -2.3652 2.8131 27 1 -0.0896 -3.0237 -2.0846 28 1 1.4265 -2.1263 -2.3433 29 1 0.6925 -4.9285 -3.2024 30 1 1.6758 -3.6995 -4.0525 31 1 3.6015 -3.0177 -0.9135 32 1 3.2903 -4.5137 0.0284 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109768256.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:36 Heat of formation + Delta-G solvation = -18.136491 kcal Electronic energy + Delta-G solvation = -16696.324037 eV Core-core repulsion = 13979.061384 eV Total energy + Delta-G solvation = -2717.262653 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -37.62633 -36.63531 -35.67217 -35.18668 -32.36091 -30.69359 -28.37473 -25.09344 -23.64998 -21.11975 -20.49261 -19.93655 -18.43283 -16.68427 -16.31726 -16.03013 -15.16699 -14.89450 -14.65981 -14.01595 -13.72938 -13.24167 -13.04437 -12.45179 -11.82989 -11.77533 -11.70905 -11.57841 -11.50091 -11.24857 -10.98767 -10.59317 -10.44976 -10.29401 -10.25828 -9.92882 -9.82741 -9.42185 -9.01335 -8.33863 -6.57732 -5.92940 -3.80443 0.50439 2.95574 3.21269 3.30464 3.33297 4.01231 4.24748 4.40573 4.87897 5.05248 5.15300 5.24539 5.28861 5.46135 5.51088 5.62559 5.99324 6.09108 6.17923 6.31386 6.37739 6.43959 6.62536 6.68459 6.87234 6.95418 7.16869 7.53344 7.65192 8.39762 9.00174 9.49314 10.18220 10.97538 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.027445 B = 0.008763 C = 0.007623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.994222 B = 3194.433703 C = 3672.209123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.041 3.959 3 Si 0.887 3.113 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.287 4.287 8 H 0.059 0.941 9 N -0.533 5.533 10 C 0.146 3.854 11 C -0.148 4.148 12 C -0.244 4.244 13 C 0.182 3.818 14 H 0.073 0.927 15 C -0.118 4.118 16 C -0.587 4.587 17 S 2.372 3.628 18 O -0.956 6.956 19 O -0.956 6.956 20 C -0.585 4.585 21 H 0.258 0.742 22 H 0.080 0.920 23 H 0.108 0.892 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.125 0.875 30 H 0.128 0.872 31 H 0.142 0.858 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.417 -5.105 -1.369 5.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.164 4.164 3 Si 0.715 3.285 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.417 4.417 8 H 0.077 0.923 9 N -0.249 5.249 10 C 0.037 3.963 11 C -0.186 4.186 12 C -0.284 4.284 13 C 0.072 3.928 14 H 0.091 0.909 15 C -0.159 4.159 16 C -0.718 4.718 17 S 2.558 3.442 18 O -0.953 6.953 19 O -0.953 6.953 20 C -0.720 4.720 21 H 0.068 0.932 22 H 0.098 0.902 23 H 0.126 0.874 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.100 0.900 27 H 0.101 0.899 28 H 0.114 0.886 29 H 0.144 0.856 30 H 0.146 0.854 31 H 0.160 0.840 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.888 -5.670 -1.820 6.021 hybrid contribution -0.198 1.633 0.324 1.677 sum 0.690 -4.037 -1.496 4.361 Atomic orbital electron populations 1.70095 1.05465 1.26437 1.47951 1.25517 0.95098 0.98875 0.96880 0.86593 0.79959 0.83675 0.78297 1.20670 1.21177 1.19862 1.18758 0.90849 0.83652 1.48439 0.92314 1.43023 1.53578 1.09891 1.18413 1.20724 0.93482 0.99689 0.82357 1.22963 0.99059 0.94369 1.02197 1.23536 0.99172 1.04623 1.01107 1.20925 0.88623 0.92621 0.90658 0.90866 1.22373 1.03559 0.97908 0.92014 1.30389 1.20071 1.11223 1.10132 1.09308 0.78102 0.76800 0.79971 1.93559 1.86348 1.30920 1.84504 1.93557 1.48706 1.84730 1.68272 1.30899 1.09064 1.14436 1.17559 0.93210 0.90206 0.87410 0.91701 0.91557 0.90024 0.89857 0.88600 0.85616 0.85402 0.84009 0.85564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.93 11.35 55.49 0.63 -21.30 16 2 C 0.04 1.00 3.20 -17.43 -0.06 0.95 16 3 Si 0.89 19.61 29.52 -169.99 -5.02 14.59 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.29 -6.86 7.25 -15.06 -0.11 -6.97 16 8 H 0.06 1.42 6.79 -52.49 -0.36 1.06 16 9 N -0.53 -11.61 2.63 -156.41 -0.41 -12.02 16 10 C 0.15 3.10 5.97 -67.93 -0.41 2.69 16 11 C -0.15 -3.19 8.26 -26.70 -0.22 -3.41 16 12 C -0.24 -4.79 10.38 -26.69 -0.28 -5.07 16 13 C 0.18 3.29 3.10 -66.40 -0.21 3.08 16 14 H 0.07 1.20 7.95 -51.93 -0.41 0.79 16 15 C -0.12 -2.00 5.86 -25.67 -0.15 -2.15 16 16 C -0.59 -7.89 7.26 37.76 0.27 -7.62 16 17 S 2.37 35.87 6.11 -107.50 -0.66 35.22 16 18 O -0.96 -16.73 18.15 -57.71 -1.05 -17.78 16 19 O -0.96 -17.38 18.15 -57.71 -1.05 -18.42 16 20 C -0.59 -9.42 6.76 38.24 0.26 -9.16 16 21 H 0.26 6.43 8.32 -40.82 -0.34 6.09 16 22 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 23 H 0.11 2.60 5.13 -51.92 -0.27 2.33 16 24 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 25 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 27 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 28 H 0.10 1.83 7.31 -51.93 -0.38 1.45 16 29 H 0.13 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.13 1.54 8.14 -51.93 -0.42 1.12 16 31 H 0.14 2.41 6.67 -51.93 -0.35 2.07 16 32 H 0.13 1.86 8.14 -51.93 -0.42 1.44 16 LS Contribution 272.59 15.07 4.11 4.11 Total: -1.00 -29.69 272.59 -8.61 -38.31 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -4.28 Total: 4.95 kcal Atomic # 6 Polarization: -26.76 SS G_CDS: -0.89 Total: -27.66 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: 0.22 Total: -33.32 kcal Atomic # 8 Polarization: -34.11 SS G_CDS: -2.09 Total: -36.20 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Atomic # 16 Polarization: 35.87 SS G_CDS: -0.66 Total: 35.22 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.69 -8.61 -38.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109768256.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.172 kcal (2) G-P(sol) polarization free energy of solvation -29.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds