Wall clock time and date at job start Sun Mar 29 2020 22:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.67938 * 2 1 4 4 O 1.44386 * 110.61358 * 122.96435 * 2 1 3 5 5 C 1.43741 * 106.97241 * 158.55991 * 4 2 1 6 6 C 1.54096 * 107.29619 * 333.48296 * 5 4 2 7 7 C 1.54807 * 104.18767 * 2.03213 * 6 5 4 8 8 H 1.09004 * 110.91096 * 139.07880 * 7 6 5 9 9 N 1.46501 * 110.90846 * 262.68033 * 7 6 5 10 10 C 1.34774 * 120.00459 * 267.70511 * 9 7 6 11 11 O 1.21284 * 119.99447 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00208 * 179.97438 * 10 9 7 13 13 S 1.81006 * 109.47098 * 180.02562 * 12 10 9 14 14 C 1.76193 * 100.00047 * 179.97438 * 13 12 10 15 15 H 1.08005 * 119.99780 * 0.02562 * 14 13 12 16 16 C 1.38794 * 120.00295 * 179.97438 * 14 13 12 17 17 N 1.31632 * 119.99640 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00344 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46914 * 90.00144 * 18 16 14 20 20 H 1.48503 * 109.47007 * 210.00027 * 18 16 14 21 21 H 1.48499 * 109.46945 * 329.99838 * 18 16 14 22 22 H 1.09001 * 109.47051 * 298.49897 * 1 2 3 23 23 H 1.09003 * 109.47006 * 58.48904 * 1 2 3 24 24 H 1.08997 * 109.47475 * 178.49126 * 1 2 3 25 25 H 1.09004 * 109.88176 * 92.90824 * 5 4 2 26 26 H 1.09000 * 109.87721 * 214.05550 * 5 4 2 27 27 H 1.09003 * 110.49000 * 120.70838 * 6 5 4 28 28 H 1.08998 * 110.48906 * 243.22523 * 6 5 4 29 29 H 0.97005 * 119.99637 * 87.70240 * 9 7 6 30 30 H 1.08994 * 109.47059 * 299.99966 * 12 10 9 31 31 H 1.09004 * 109.47203 * 60.00320 * 12 10 9 32 32 H 0.97005 * 120.00188 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0198 0.0000 4 8 2.0383 -0.7353 1.1338 5 6 3.3838 -1.1255 0.8119 6 6 3.4794 -1.2169 -0.7233 7 6 2.0758 -0.7895 -1.2170 8 1 2.1509 -0.1478 -2.0950 9 7 1.2413 -1.9604 -1.4976 10 6 1.2064 -2.4811 -2.7402 11 8 1.8663 -1.9804 -3.6261 12 6 0.3483 -3.6859 -3.0286 13 16 0.5154 -4.1422 -4.7722 14 6 -0.5602 -5.5366 -4.8280 15 1 -1.0786 -5.8547 -3.9355 16 6 -0.7423 -6.2254 -6.0191 17 7 -0.1110 -5.8373 -7.1069 18 14 -1.8833 -7.7033 -6.0784 19 1 -3.2578 -7.2542 -6.4165 20 1 -1.4055 -8.6563 -7.1123 21 1 -1.8934 -8.3743 -4.7537 22 1 -0.3633 0.4903 0.9031 23 1 -0.3633 0.5371 -0.8762 24 1 -0.3634 -1.0273 -0.0271 25 1 4.0853 -0.3783 1.1831 26 1 3.6043 -2.0964 1.2555 27 1 4.2406 -0.5335 -1.0996 28 1 3.6996 -2.2389 -1.0317 29 1 0.7138 -2.3611 -0.7889 30 1 0.6695 -4.5187 -2.4031 31 1 -0.6937 -3.4500 -2.8126 32 1 -0.2379 -6.3189 -7.9394 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158658161.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:59 Heat of formation + Delta-G solvation = -112.352012 kcal Electronic energy + Delta-G solvation = -15560.928658 eV Core-core repulsion = 12839.580514 eV Total energy + Delta-G solvation = -2721.348144 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.35250 -39.72226 -35.54427 -34.58767 -32.50399 -32.41298 -30.20975 -27.68813 -26.67501 -22.88431 -22.46503 -21.41285 -19.89988 -18.19120 -17.75892 -16.88254 -16.78674 -16.57157 -16.34228 -16.00936 -15.54344 -14.96404 -14.53403 -14.25794 -13.71281 -13.37874 -13.33052 -13.16887 -12.99513 -12.87971 -12.61562 -12.25811 -12.15134 -11.90286 -11.70603 -11.14522 -10.98802 -10.74039 -10.28898 -10.10881 -8.67172 -8.35130 -6.13224 1.26040 1.42583 1.46427 1.57043 1.57301 2.21851 2.27739 2.84547 2.99252 3.30844 3.58020 3.60905 3.91636 4.04149 4.13608 4.22336 4.28276 4.38588 4.49590 4.59559 4.71162 4.87761 4.91650 4.98697 5.03893 5.26009 5.41545 5.44040 5.90069 6.19455 6.44779 7.06402 7.20033 8.74129 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.048454 B = 0.004586 C = 0.004466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.733163 B = 6103.780678 C = 6267.942538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.073 3.927 3 H 0.103 0.897 4 O -0.389 6.389 5 C 0.051 3.949 6 C -0.167 4.167 7 C 0.108 3.892 8 H 0.095 0.905 9 N -0.701 5.701 10 C 0.538 3.462 11 O -0.562 6.562 12 C -0.131 4.131 13 S -0.147 6.147 14 C -0.548 4.548 15 H 0.082 0.918 16 C 0.015 3.985 17 N -0.911 5.911 18 Si 0.998 3.002 19 H -0.267 1.267 20 H -0.278 1.278 21 H -0.259 1.259 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.061 0.939 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.096 0.904 28 H 0.067 0.933 29 H 0.413 0.587 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.440 9.826 17.567 20.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.016 3.984 3 H 0.120 0.880 4 O -0.308 6.308 5 C -0.026 4.026 6 C -0.206 4.206 7 C 0.002 3.998 8 H 0.113 0.887 9 N -0.355 5.355 10 C 0.324 3.676 11 O -0.440 6.440 12 C -0.282 4.282 13 S 0.080 5.920 14 C -0.696 4.696 15 H 0.100 0.900 16 C -0.190 4.190 17 N -0.548 5.548 18 Si 0.820 3.180 19 H -0.193 1.193 20 H -0.203 1.203 21 H -0.183 1.183 22 H 0.096 0.904 23 H 0.095 0.905 24 H 0.080 0.920 25 H 0.097 0.903 26 H 0.107 0.893 27 H 0.114 0.886 28 H 0.085 0.915 29 H 0.251 0.749 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.460 10.594 16.143 19.616 hybrid contribution -1.200 -1.585 0.576 2.070 sum 2.260 9.009 16.718 19.125 Atomic orbital electron populations 1.21773 0.92026 1.03198 1.03467 1.23493 0.96360 0.95745 0.82841 0.87973 1.88886 1.28817 1.73893 1.39247 1.23230 0.84153 1.01492 0.93705 1.23382 0.97393 1.03255 0.96593 1.22562 0.90253 0.87544 0.99421 0.88728 1.45731 1.48172 1.31494 1.10131 1.20037 0.81107 0.83947 0.82530 1.90688 1.44703 1.62111 1.46504 1.23376 1.03279 0.99008 1.02526 1.85535 1.62113 1.38505 1.05886 1.23210 1.31284 1.15669 0.99411 0.89987 1.26110 0.97752 1.01108 0.94022 1.70181 1.42238 1.41400 1.00968 0.84958 0.77756 0.76682 0.78612 1.19255 1.20273 1.18266 0.90436 0.90486 0.92016 0.90315 0.89275 0.88554 0.91464 0.74866 0.87475 0.87195 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.34 71.98 0.67 -1.64 16 2 C 0.07 1.26 3.83 31.28 0.12 1.38 16 3 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 4 O -0.39 -7.52 11.22 -148.98 -1.67 -9.19 16 5 C 0.05 0.82 7.70 72.35 0.56 1.38 16 6 C -0.17 -3.31 6.75 31.58 0.21 -3.09 16 7 C 0.11 2.40 3.23 46.29 0.15 2.55 16 8 H 0.09 2.40 7.54 -2.38 -0.02 2.39 16 9 N -0.70 -18.00 4.45 -436.39 -1.94 -19.95 16 10 C 0.54 19.60 7.85 87.66 0.69 20.29 16 11 O -0.56 -25.49 15.50 -3.04 -0.05 -25.54 16 12 C -0.13 -5.17 6.16 71.24 0.44 -4.73 16 13 S -0.15 -8.17 20.57 -56.49 -1.16 -9.33 16 14 C -0.55 -31.28 9.50 67.95 0.65 -30.64 16 15 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 16 C 0.01 0.85 5.49 84.86 0.47 1.31 16 17 N -0.91 -55.91 13.22 21.65 0.29 -55.63 16 18 Si 1.00 43.49 29.55 68.60 2.03 45.52 16 19 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 20 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 21 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 22 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.06 1.01 6.39 -2.39 -0.02 1.00 16 25 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 26 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.07 1.58 8.07 -2.39 -0.02 1.57 16 29 H 0.41 8.69 7.20 -92.70 -0.67 8.02 16 30 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 31 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 32 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 Total: -1.00 -73.42 286.16 1.89 -71.53 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.45 Total: 15.78 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: 3.95 Total: -13.20 kcal Atomic # 7 Polarization: -73.92 SS G_CDS: -1.66 Total: -75.58 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -1.72 Total: -34.73 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: -8.17 SS G_CDS: -1.16 Total: -9.33 kcal Total: -73.42 1.89 -71.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158658161.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.820 kcal (2) G-P(sol) polarization free energy of solvation -73.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds