Wall clock time and date at job start Sun Mar 29 2020 22:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.89798 * 2 1 4 4 O 1.43587 * 110.04394 * 238.97576 * 2 1 3 5 5 C 1.43651 * 110.01226 * 242.47102 * 4 2 1 6 6 C 1.54950 * 105.12850 * 335.38500 * 5 4 2 7 7 C 1.54380 * 109.83189 * 120.93316 * 2 1 3 8 8 H 1.09008 * 110.85057 * 22.47504 * 7 2 1 9 9 N 1.46499 * 110.85002 * 259.05885 * 7 2 1 10 10 C 1.34778 * 120.00278 * 157.76831 * 9 7 2 11 11 O 1.21278 * 119.99748 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00209 * 180.02562 * 10 9 7 13 13 S 1.80999 * 109.47181 * 180.02562 * 12 10 9 14 14 C 1.76199 * 99.99825 * 179.97438 * 13 12 10 15 15 H 1.08002 * 120.00405 * 0.02562 * 14 13 12 16 16 C 1.38803 * 119.99855 * 179.72221 * 14 13 12 17 17 N 1.31634 * 119.99756 * 0.27728 * 16 14 13 18 18 Si 1.86803 * 120.00005 * 180.27923 * 16 14 13 19 19 H 1.48496 * 109.47141 * 59.99753 * 18 16 14 20 20 H 1.48497 * 109.46782 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46993 * 300.00030 * 18 16 14 22 22 H 1.09005 * 109.46756 * 299.06256 * 1 2 3 23 23 H 1.09001 * 109.47324 * 59.06657 * 1 2 3 24 24 H 1.09003 * 109.47082 * 179.07379 * 1 2 3 25 25 H 1.09000 * 110.30652 * 216.47494 * 5 4 2 26 26 H 1.08993 * 110.39471 * 94.34111 * 5 4 2 27 27 H 1.09000 * 111.12227 * 278.52172 * 6 5 4 28 28 H 1.09001 * 111.11896 * 154.36786 * 6 5 4 29 29 H 0.97000 * 119.99972 * 337.77186 * 9 7 2 30 30 H 1.08999 * 109.47278 * 59.99800 * 12 10 9 31 31 H 1.09002 * 109.46837 * 300.00183 * 12 10 9 32 32 H 0.97000 * 119.99219 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9010 1.0249 0.0000 4 8 2.0221 -0.6952 -1.1559 5 6 2.7767 -1.8488 -0.7516 6 6 3.2723 -1.5261 0.6807 7 6 2.0538 -0.7465 1.2457 8 1 1.2999 -1.4323 1.6325 9 7 2.4751 0.1997 2.2818 10 6 2.5349 -0.1936 3.5695 11 8 2.2404 -1.3309 3.8705 12 6 2.9678 0.7799 4.6353 13 16 2.9463 -0.0420 6.2478 14 6 3.4794 1.2863 7.2754 15 1 3.7035 2.2492 6.8405 16 6 3.6052 1.0971 8.6447 17 7 3.3315 -0.0763 9.1748 18 14 4.1628 2.5076 9.7351 19 1 3.2037 3.6350 9.6153 20 1 4.2163 2.0504 11.1470 21 1 5.5122 2.9585 9.3098 22 1 -0.3633 0.4992 0.8983 23 1 -0.3634 0.5283 -0.8815 24 1 -0.3633 -1.0276 -0.0166 25 1 3.6242 -1.9998 -1.4201 26 1 2.1410 -2.7341 -0.7415 27 1 4.1632 -0.8986 0.6560 28 1 3.4525 -2.4388 1.2488 29 1 2.7110 1.1092 2.0410 30 1 2.2847 1.6291 4.6508 31 1 3.9774 1.1296 4.4196 32 1 3.4198 -0.2085 10.1317 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158658284.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:02 Heat of formation + Delta-G solvation = -115.640533 kcal Electronic energy + Delta-G solvation = -15409.737504 eV Core-core repulsion = 12688.246759 eV Total energy + Delta-G solvation = -2721.490745 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.28454 -39.82884 -35.71928 -34.58195 -32.56191 -32.36479 -30.27686 -27.68634 -26.52146 -23.09575 -22.25466 -21.71361 -19.84495 -18.22680 -17.89427 -17.03121 -16.87529 -16.54225 -16.27014 -15.73972 -15.24576 -14.82256 -14.70014 -14.50919 -13.86739 -13.55547 -13.34361 -13.16971 -12.98828 -12.86452 -12.63275 -12.43059 -12.24416 -11.90346 -11.73123 -11.12639 -11.01786 -10.59153 -10.28482 -10.16647 -8.66914 -8.34538 -6.12773 1.25647 1.44388 1.46343 1.55457 1.56018 2.14959 2.27903 2.77677 2.99857 3.31367 3.48986 3.64149 3.88763 3.94103 4.11771 4.18254 4.29757 4.33230 4.50675 4.62780 4.68392 4.81949 4.91151 4.96349 5.00290 5.22639 5.41723 5.42236 5.94208 6.19711 6.42941 7.06917 7.18504 8.74431 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.057781 B = 0.004267 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.474111 B = 6559.815597 C = 6678.894372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.079 3.921 3 H 0.102 0.898 4 O -0.389 6.389 5 C 0.055 3.945 6 C -0.169 4.169 7 C 0.114 3.886 8 H 0.086 0.914 9 N -0.702 5.702 10 C 0.538 3.462 11 O -0.562 6.562 12 C -0.130 4.130 13 S -0.150 6.150 14 C -0.548 4.548 15 H 0.083 0.917 16 C 0.015 3.985 17 N -0.912 5.912 18 Si 0.998 3.002 19 H -0.262 1.262 20 H -0.279 1.279 21 H -0.262 1.262 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.056 0.944 25 H 0.107 0.893 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.418 0.582 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.360 3.321 -19.352 19.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.021 3.979 3 H 0.120 0.880 4 O -0.308 6.308 5 C -0.022 4.022 6 C -0.207 4.207 7 C 0.008 3.992 8 H 0.104 0.896 9 N -0.357 5.357 10 C 0.324 3.676 11 O -0.439 6.439 12 C -0.281 4.281 13 S 0.077 5.923 14 C -0.696 4.696 15 H 0.102 0.898 16 C -0.190 4.190 17 N -0.548 5.548 18 Si 0.819 3.181 19 H -0.186 1.186 20 H -0.205 1.205 21 H -0.187 1.187 22 H 0.090 0.910 23 H 0.094 0.906 24 H 0.076 0.924 25 H 0.125 0.875 26 H 0.086 0.914 27 H 0.107 0.893 28 H 0.096 0.904 29 H 0.256 0.744 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.910 1.395 -18.938 19.085 hybrid contribution 0.718 1.902 0.765 2.173 sum -1.192 3.298 -18.173 18.508 Atomic orbital electron populations 1.22129 0.93577 1.02905 1.03231 1.22965 0.95233 0.96712 0.83036 0.87996 1.88496 1.71418 1.41023 1.29905 1.23417 0.95826 0.88574 0.94346 1.23652 0.98676 1.01625 0.96781 1.22585 0.96961 0.91687 0.87966 0.89594 1.45612 1.69228 1.15930 1.04935 1.20076 0.76205 0.87753 0.83539 1.90696 1.49244 1.21727 1.82248 1.23371 1.06026 1.01800 0.96894 1.85577 1.88845 1.20381 0.97535 1.23184 1.52598 0.98807 0.94991 0.89841 1.26115 0.94676 0.99479 0.98741 1.70178 1.46863 1.24689 1.13076 0.85014 0.79206 0.77428 0.76421 1.18634 1.20459 1.18656 0.90958 0.90583 0.92444 0.87518 0.91367 0.89286 0.90414 0.74393 0.86986 0.87064 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.45 71.98 0.68 -2.00 16 2 C 0.08 1.40 3.93 31.06 0.12 1.52 16 3 H 0.10 1.47 7.69 -2.39 -0.02 1.46 16 4 O -0.39 -7.75 11.04 -148.98 -1.64 -9.40 16 5 C 0.05 0.93 7.78 72.65 0.57 1.49 16 6 C -0.17 -3.43 6.85 32.05 0.22 -3.21 16 7 C 0.11 2.54 2.84 46.25 0.13 2.68 16 8 H 0.09 2.32 7.33 -2.38 -0.02 2.30 16 9 N -0.70 -16.78 5.20 -436.59 -2.27 -19.05 16 10 C 0.54 19.03 7.85 87.66 0.69 19.71 16 11 O -0.56 -25.21 15.55 -3.02 -0.05 -25.26 16 12 C -0.13 -4.95 6.16 71.23 0.44 -4.51 16 13 S -0.15 -8.23 20.57 -56.49 -1.16 -9.39 16 14 C -0.55 -30.89 9.50 67.96 0.65 -30.25 16 15 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 16 C 0.01 0.83 5.49 84.86 0.47 1.30 16 17 N -0.91 -55.65 13.22 21.65 0.29 -55.37 16 18 Si 1.00 43.05 29.55 68.60 2.03 45.08 16 19 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 20 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 22 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 23 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.42 7.01 8.34 -92.71 -0.77 6.23 16 30 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 31 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 32 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -73.55 289.05 1.49 -72.07 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.34 Total: 14.58 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: 3.96 Total: -13.27 kcal Atomic # 7 Polarization: -72.43 SS G_CDS: -1.98 Total: -74.42 kcal Atomic # 8 Polarization: -32.96 SS G_CDS: -1.69 Total: -34.65 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: -8.23 SS G_CDS: -1.16 Total: -9.39 kcal Total: -73.55 1.49 -72.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158658284.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.575 kcal (2) G-P(sol) polarization free energy of solvation -73.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds