Wall clock time and date at job start Sun Mar 29 2020 22:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.86717 * 2 1 4 4 O 1.43743 * 109.87771 * 121.16234 * 2 1 3 5 5 C 1.44376 * 106.97419 * 145.93887 * 4 2 1 6 6 C 1.54997 * 103.49052 * 319.93871 * 5 4 2 7 7 C 1.54097 * 109.87805 * 238.99491 * 2 1 3 8 8 H 1.09007 * 110.49026 * 357.35178 * 7 2 1 9 9 N 1.46499 * 110.49105 * 119.86977 * 7 2 1 10 10 C 1.34777 * 120.00199 * 205.00162 * 9 7 2 11 11 O 1.21283 * 119.99750 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27479 * 10 9 7 13 13 S 1.80999 * 109.46903 * 179.72354 * 12 10 9 14 14 C 1.76200 * 99.99730 * 179.97438 * 13 12 10 15 15 H 1.08001 * 120.00351 * 0.02562 * 14 13 12 16 16 C 1.38796 * 120.00095 * 179.97438 * 14 13 12 17 17 N 1.31634 * 119.99941 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00384 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46990 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47522 * 119.99735 * 18 16 14 21 21 H 1.48500 * 109.47073 * 240.00101 * 18 16 14 22 22 H 1.09000 * 109.46711 * 181.01051 * 1 2 3 23 23 H 1.09000 * 109.46996 * 301.00423 * 1 2 3 24 24 H 1.09004 * 109.47068 * 61.00676 * 1 2 3 25 25 H 1.09003 * 110.61866 * 78.43708 * 5 4 2 26 26 H 1.09004 * 110.62118 * 201.28045 * 5 4 2 27 27 H 1.09007 * 110.90538 * 278.82670 * 6 5 4 28 28 H 1.08996 * 110.90716 * 155.22278 * 6 5 4 29 29 H 0.97000 * 119.99484 * 24.99259 * 9 7 2 30 30 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 31 31 H 1.08994 * 109.46990 * 59.72065 * 12 10 9 32 32 H 0.97002 * 120.00288 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6995 1.1567 5 6 3.2379 -1.3651 0.7629 6 6 2.9196 -1.8905 -0.6602 7 6 2.0540 -0.7465 -1.2421 8 1 1.2245 -1.1504 -1.8226 9 7 2.8711 0.1448 -2.0693 10 6 3.0082 -0.0971 -3.3881 11 8 2.4555 -1.0529 -3.8899 12 6 3.8538 0.8162 -4.2377 13 16 3.8465 0.2264 -5.9489 14 6 4.8798 1.4425 -6.6960 15 1 5.2974 2.2382 -6.0969 16 6 5.1580 1.3772 -8.0542 17 7 4.6504 0.4065 -8.7841 18 14 6.2541 2.6660 -8.8462 19 1 6.6942 3.6416 -7.8168 20 1 7.4426 2.0058 -9.4434 21 1 5.4962 3.3755 -9.9080 22 1 -0.3633 -1.0275 0.0181 23 1 -0.3633 0.5294 0.8808 24 1 -0.3633 0.4981 -0.8989 25 1 4.0685 -0.6598 0.7347 26 1 3.4600 -2.1910 1.4388 27 1 2.3539 -2.8212 -0.6137 28 1 3.8332 -2.0207 -1.2401 29 1 3.3134 0.9091 -1.6678 30 1 3.4474 1.8270 -4.2000 31 1 4.8760 0.8212 -3.8594 32 1 4.8445 0.3610 -9.7334 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158658418.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:06 Heat of formation + Delta-G solvation = -90.309540 kcal Electronic energy + Delta-G solvation = -15439.498063 eV Core-core repulsion = 12719.105752 eV Total energy + Delta-G solvation = -2720.392311 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.28355 -38.54237 -34.43592 -32.45278 -31.79987 -31.19811 -28.87844 -25.68075 -25.32685 -22.59458 -21.22283 -20.22004 -17.91153 -17.04226 -16.44777 -16.09795 -15.51662 -14.86908 -14.82088 -14.81022 -13.98119 -13.40181 -13.24130 -12.92035 -12.65404 -12.53013 -12.25120 -11.90971 -11.51018 -11.36638 -11.08784 -11.06436 -11.03537 -10.77213 -9.96779 -9.83090 -9.45785 -9.10394 -8.97939 -8.26673 -6.53124 -6.24270 -3.95129 2.95563 3.00352 3.20000 3.26042 3.30417 3.56984 3.70829 4.17902 4.41060 4.50525 4.79688 4.85110 5.00485 5.08616 5.11164 5.15248 5.37064 5.49168 5.55517 5.60568 5.75492 5.83483 5.85397 5.86986 5.96777 6.09812 6.45158 6.72227 7.57360 7.61220 8.32942 8.53428 9.21321 10.83234 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.054346 B = 0.004310 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.090435 B = 6494.636035 C = 6543.966810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.068 3.932 3 H 0.073 0.927 4 O -0.373 6.373 5 C 0.046 3.954 6 C -0.167 4.167 7 C 0.116 3.884 8 H 0.107 0.893 9 N -0.732 5.732 10 C 0.533 3.467 11 O -0.514 6.514 12 C -0.154 4.154 13 S -0.060 6.060 14 C -0.536 4.536 15 H 0.073 0.927 16 C 0.074 3.926 17 N -0.867 5.867 18 Si 0.919 3.081 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.280 1.280 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.398 0.602 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.634 0.095 17.849 18.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.010 3.990 3 H 0.091 0.909 4 O -0.292 6.292 5 C -0.030 4.030 6 C -0.205 4.205 7 C 0.010 3.990 8 H 0.125 0.875 9 N -0.387 5.387 10 C 0.320 3.680 11 O -0.388 6.388 12 C -0.304 4.304 13 S 0.167 5.833 14 C -0.684 4.684 15 H 0.091 0.909 16 C -0.136 4.136 17 N -0.503 5.503 18 Si 0.745 3.255 19 H -0.196 1.196 20 H -0.205 1.205 21 H -0.205 1.205 22 H 0.084 0.916 23 H 0.083 0.917 24 H 0.091 0.909 25 H 0.079 0.921 26 H 0.112 0.888 27 H 0.103 0.897 28 H 0.106 0.894 29 H 0.232 0.768 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.682 -1.591 17.029 17.732 hybrid contribution 1.747 2.293 0.033 2.883 sum -2.935 0.702 17.061 17.326 Atomic orbital electron populations 1.21904 0.92869 1.03205 1.02721 1.22992 0.95816 0.95801 0.84437 0.90884 1.88899 1.39891 1.67677 1.32780 1.23583 0.87502 0.96448 0.95508 1.23554 1.01605 0.99024 0.96359 1.22300 0.94576 0.90281 0.91861 0.87543 1.46102 1.53024 1.30972 1.08591 1.20358 0.80769 0.85577 0.81328 1.90706 1.46479 1.29380 1.72247 1.23538 1.01397 1.01781 1.03721 1.85405 1.65896 1.38538 0.93500 1.22908 1.34944 1.14060 0.96487 0.90861 1.24994 0.96102 0.96326 0.96137 1.70029 1.42426 1.30712 1.07117 0.86110 0.79727 0.80523 0.79091 1.19616 1.20546 1.20542 0.91566 0.91658 0.90856 0.92120 0.88830 0.89667 0.89423 0.76760 0.89146 0.89176 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.36 37.16 0.35 -1.01 16 2 C 0.07 0.69 3.84 -26.15 -0.10 0.59 16 3 H 0.07 0.67 7.64 -51.93 -0.40 0.28 16 4 O -0.37 -4.16 11.19 -35.23 -0.39 -4.56 16 5 C 0.05 0.43 7.72 38.21 0.29 0.73 16 6 C -0.17 -1.82 6.88 -24.72 -0.17 -1.99 16 7 C 0.12 1.38 3.04 -66.41 -0.20 1.18 16 8 H 0.11 1.45 7.11 -51.92 -0.37 1.08 16 9 N -0.73 -9.49 5.08 -52.32 -0.27 -9.76 16 10 C 0.53 9.65 7.85 -10.98 -0.09 9.56 16 11 O -0.51 -11.38 15.51 5.55 0.09 -11.29 16 12 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 13 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 14 C -0.54 -15.14 9.50 30.94 0.29 -14.84 16 15 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 16 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 17 N -0.87 -26.01 13.22 55.49 0.73 -25.28 16 18 Si 0.92 21.25 29.55 -169.99 -5.02 16.22 16 19 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 28 H 0.09 1.05 8.06 -51.93 -0.42 0.63 16 29 H 0.40 4.04 8.35 -40.82 -0.34 3.70 16 30 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 31 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 32 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 288.68 15.07 4.35 4.35 Total: -1.00 -33.49 288.68 -6.67 -40.16 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -4.45 Total: 0.57 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: 0.50 Total: -6.60 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: 0.47 Total: -35.03 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.31 Total: -15.85 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -33.49 -6.67 -40.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158658418.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.147 kcal (2) G-P(sol) polarization free energy of solvation -33.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds