Wall clock time and date at job start Sun Mar 29 2020 22:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.86717 * 2 1 4 4 O 1.43743 * 109.87771 * 121.16234 * 2 1 3 5 5 C 1.44376 * 106.97419 * 145.93887 * 4 2 1 6 6 C 1.54997 * 103.49052 * 319.93871 * 5 4 2 7 7 C 1.54097 * 109.87805 * 238.99491 * 2 1 3 8 8 H 1.09007 * 110.49026 * 357.35178 * 7 2 1 9 9 N 1.46499 * 110.49105 * 119.86977 * 7 2 1 10 10 C 1.34777 * 120.00199 * 205.00162 * 9 7 2 11 11 O 1.21283 * 119.99750 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27479 * 10 9 7 13 13 S 1.80999 * 109.46903 * 179.72354 * 12 10 9 14 14 C 1.76200 * 99.99730 * 179.97438 * 13 12 10 15 15 H 1.08001 * 120.00351 * 0.02562 * 14 13 12 16 16 C 1.38796 * 120.00095 * 179.97438 * 14 13 12 17 17 N 1.31634 * 119.99941 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00384 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46990 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47522 * 119.99735 * 18 16 14 21 21 H 1.48500 * 109.47073 * 240.00101 * 18 16 14 22 22 H 1.09000 * 109.46711 * 181.01051 * 1 2 3 23 23 H 1.09000 * 109.46996 * 301.00423 * 1 2 3 24 24 H 1.09004 * 109.47068 * 61.00676 * 1 2 3 25 25 H 1.09003 * 110.61866 * 78.43708 * 5 4 2 26 26 H 1.09004 * 110.62118 * 201.28045 * 5 4 2 27 27 H 1.09007 * 110.90538 * 278.82670 * 6 5 4 28 28 H 1.08996 * 110.90716 * 155.22278 * 6 5 4 29 29 H 0.97000 * 119.99484 * 24.99259 * 9 7 2 30 30 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 31 31 H 1.08994 * 109.46990 * 59.72065 * 12 10 9 32 32 H 0.97002 * 120.00288 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6995 1.1567 5 6 3.2379 -1.3651 0.7629 6 6 2.9196 -1.8905 -0.6602 7 6 2.0540 -0.7465 -1.2421 8 1 1.2245 -1.1504 -1.8226 9 7 2.8711 0.1448 -2.0693 10 6 3.0082 -0.0971 -3.3881 11 8 2.4555 -1.0529 -3.8899 12 6 3.8538 0.8162 -4.2377 13 16 3.8465 0.2264 -5.9489 14 6 4.8798 1.4425 -6.6960 15 1 5.2974 2.2382 -6.0969 16 6 5.1580 1.3772 -8.0542 17 7 4.6504 0.4065 -8.7841 18 14 6.2541 2.6660 -8.8462 19 1 6.6942 3.6416 -7.8168 20 1 7.4426 2.0058 -9.4434 21 1 5.4962 3.3755 -9.9080 22 1 -0.3633 -1.0275 0.0181 23 1 -0.3633 0.5294 0.8808 24 1 -0.3633 0.4981 -0.8989 25 1 4.0685 -0.6598 0.7347 26 1 3.4600 -2.1910 1.4388 27 1 2.3539 -2.8212 -0.6137 28 1 3.8332 -2.0207 -1.2401 29 1 3.3134 0.9091 -1.6678 30 1 3.4474 1.8270 -4.2000 31 1 4.8760 0.8212 -3.8594 32 1 4.8445 0.3610 -9.7334 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158658418.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:06 Heat of formation + Delta-G solvation = -114.906846 kcal Electronic energy + Delta-G solvation = -15440.564682 eV Core-core repulsion = 12719.105752 eV Total energy + Delta-G solvation = -2721.458930 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.34380 -39.79043 -35.63518 -34.58660 -32.66648 -32.28093 -30.25894 -27.69111 -26.36321 -23.48859 -22.18778 -21.52281 -19.83792 -18.12418 -17.88470 -16.98679 -16.88386 -16.50610 -16.19866 -16.12746 -15.54316 -14.70275 -14.51669 -14.18934 -13.95047 -13.49978 -13.29440 -13.16333 -12.93179 -12.89729 -12.62017 -12.45485 -12.22030 -11.90192 -11.70278 -11.16075 -11.00085 -10.73015 -10.27886 -10.17610 -8.67171 -8.35227 -6.13270 1.25992 1.41618 1.46603 1.55893 1.57857 2.18561 2.27269 2.82852 2.99375 3.31177 3.52799 3.66199 3.90029 3.95704 4.07412 4.22264 4.29352 4.36020 4.50245 4.63087 4.70990 4.82193 4.92913 4.97645 4.99751 5.22670 5.37826 5.42093 5.87257 6.19759 6.42859 7.06544 7.19054 8.74256 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.054346 B = 0.004310 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.090435 B = 6494.636035 C = 6543.966810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.074 3.926 3 H 0.089 0.911 4 O -0.385 6.385 5 C 0.050 3.950 6 C -0.167 4.167 7 C 0.111 3.889 8 H 0.087 0.913 9 N -0.705 5.705 10 C 0.537 3.463 11 O -0.562 6.562 12 C -0.130 4.130 13 S -0.151 6.151 14 C -0.546 4.546 15 H 0.083 0.917 16 C 0.014 3.986 17 N -0.912 5.912 18 Si 0.999 3.001 19 H -0.256 1.256 20 H -0.274 1.274 21 H -0.274 1.274 22 H 0.062 0.938 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.111 0.889 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.416 0.584 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.741 1.812 19.594 19.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.015 3.985 3 H 0.107 0.893 4 O -0.304 6.304 5 C -0.026 4.026 6 C -0.205 4.205 7 C 0.005 3.995 8 H 0.105 0.895 9 N -0.360 5.360 10 C 0.324 3.676 11 O -0.439 6.439 12 C -0.281 4.281 13 S 0.076 5.924 14 C -0.694 4.694 15 H 0.101 0.899 16 C -0.191 4.191 17 N -0.548 5.548 18 Si 0.820 3.180 19 H -0.180 1.180 20 H -0.200 1.200 21 H -0.200 1.200 22 H 0.081 0.919 23 H 0.095 0.905 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.129 0.871 27 H 0.104 0.896 28 H 0.095 0.905 29 H 0.254 0.746 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.784 0.151 18.838 19.214 hybrid contribution 1.425 1.727 -0.377 2.271 sum -2.359 1.878 18.461 18.705 Atomic orbital electron populations 1.21917 0.92202 1.03246 1.03343 1.22996 0.96346 0.96068 0.83053 0.89294 1.88898 1.40607 1.67927 1.32973 1.23681 0.87252 0.97188 0.94496 1.23527 1.00845 0.98804 0.97370 1.22422 0.94093 0.90814 0.92133 0.89479 1.45801 1.52083 1.31295 1.06804 1.20077 0.80235 0.84664 0.82664 1.90699 1.48492 1.31261 1.73469 1.23376 1.03284 1.02644 0.98799 1.85586 1.66467 1.40421 0.99904 1.23244 1.34881 1.14133 0.97139 0.89868 1.26115 0.97551 0.98625 0.96762 1.70188 1.44126 1.32963 1.07555 0.84906 0.77401 0.77518 0.78128 1.18005 1.19960 1.19962 0.91932 0.90511 0.90713 0.90845 0.87104 0.89555 0.90537 0.74625 0.87066 0.87093 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.36 71.98 0.67 -1.78 16 2 C 0.07 1.32 3.84 30.97 0.12 1.44 16 3 H 0.09 1.34 7.64 -2.39 -0.02 1.32 16 4 O -0.38 -7.57 11.19 -148.98 -1.67 -9.24 16 5 C 0.05 0.81 7.72 72.67 0.56 1.37 16 6 C -0.17 -3.43 6.88 31.89 0.22 -3.21 16 7 C 0.11 2.50 3.04 45.98 0.14 2.64 16 8 H 0.09 2.36 7.11 -2.38 -0.02 2.35 16 9 N -0.71 -16.98 5.08 -437.85 -2.22 -19.20 16 10 C 0.54 19.08 7.85 87.66 0.69 19.77 16 11 O -0.56 -25.33 15.51 -3.04 -0.05 -25.37 16 12 C -0.13 -4.97 6.16 71.24 0.44 -4.53 16 13 S -0.15 -8.26 20.57 -56.49 -1.16 -9.43 16 14 C -0.55 -30.83 9.50 67.95 0.65 -30.18 16 15 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 16 C 0.01 0.80 5.49 84.86 0.47 1.27 16 17 N -0.91 -55.66 13.22 21.65 0.29 -55.37 16 18 Si 1.00 43.15 29.55 68.60 2.03 45.18 16 19 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 20 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 21 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 22 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 25 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 26 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 28 H 0.08 1.76 8.06 -2.39 -0.02 1.74 16 29 H 0.42 7.14 8.35 -92.71 -0.77 6.37 16 30 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 31 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 32 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -73.73 288.68 1.51 -72.23 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.34 Total: 14.43 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: 3.95 Total: -13.22 kcal Atomic # 7 Polarization: -72.64 SS G_CDS: -1.94 Total: -74.58 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: -1.71 Total: -34.61 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: -8.26 SS G_CDS: -1.16 Total: -9.43 kcal Total: -73.73 1.51 -72.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158658418.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.681 kcal (2) G-P(sol) polarization free energy of solvation -73.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds