Wall clock time and date at job start Sun Mar 29 2020 22:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86801 * 119.99913 * 2 1 4 4 H 1.48495 * 109.47454 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.47189 * 300.00229 * 3 2 1 6 6 H 1.48499 * 109.47180 * 59.99857 * 3 2 1 7 7 C 1.38946 * 120.00279 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00184 * 179.97438 * 7 2 1 9 9 N 1.37099 * 120.00020 * 359.97438 * 7 2 1 10 10 C 1.34782 * 120.00157 * 180.02562 * 9 7 2 11 11 O 1.21289 * 119.99690 * 359.97438 * 10 9 7 12 12 C 1.50694 * 119.99975 * 179.97438 * 10 9 7 13 13 N 1.46497 * 109.47325 * 179.97438 * 12 10 9 14 14 C 1.36038 * 126.35114 * 264.98076 * 13 12 10 15 15 N 1.30112 * 110.09814 * 179.97438 * 14 13 12 16 16 C 1.35785 * 109.64631 * 359.97438 * 15 14 13 17 17 C 1.39735 * 133.60204 * 179.97438 * 16 15 14 18 18 C 1.36605 * 119.88505 * 180.02562 * 17 16 15 19 19 C 1.38772 * 120.67413 * 359.97438 * 18 17 16 20 20 C 1.37857 * 120.44773 * 359.97248 * 19 18 17 21 21 C 1.38055 * 126.34508 * 84.97270 * 13 12 10 22 22 H 0.97001 * 120.00081 * 359.97438 * 1 2 3 23 23 H 0.96997 * 119.99711 * 359.97438 * 9 7 2 24 24 H 1.09008 * 109.47192 * 59.99659 * 12 10 9 25 25 H 1.09003 * 109.47555 * 299.99827 * 12 10 9 26 26 H 1.07991 * 124.95216 * 359.97319 * 14 13 12 27 27 H 1.08000 * 120.05646 * 359.97438 * 17 16 15 28 28 H 1.07999 * 119.66329 * 179.72373 * 18 17 16 29 29 H 1.07998 * 119.77865 * 180.02562 * 19 18 17 30 30 H 1.07997 * 120.15633 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0010 12 6 1.2440 -4.8629 0.0000 13 7 2.1960 -5.9764 -0.0007 14 6 2.6462 -6.6516 -1.0925 15 7 3.4828 -7.5800 -0.7304 16 6 3.6270 -7.5634 0.6196 17 6 4.3814 -8.3230 1.5177 18 6 4.3131 -8.0602 2.8564 19 6 3.5006 -7.0434 3.3378 20 6 2.7483 -6.2805 2.4703 21 6 2.8026 -6.5350 1.1065 22 1 -0.4850 0.8400 0.0004 23 1 0.3535 -2.3906 0.0002 24 1 0.6169 -4.9209 -0.8897 25 1 0.6177 -4.9206 0.8903 26 1 2.3522 -6.4469 -2.1112 27 1 5.0168 -9.1169 1.1540 28 1 4.8944 -8.6524 3.5477 29 1 3.4579 -6.8478 4.3990 30 1 2.1179 -5.4901 2.8500 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168659665.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:40 Heat of formation + Delta-G solvation = 39.276909 kcal Electronic energy + Delta-G solvation = -16747.735090 eV Core-core repulsion = 13929.810869 eV Total energy + Delta-G solvation = -2817.924221 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.82629 -38.37427 -36.97729 -34.32255 -33.56967 -31.46987 -30.28725 -29.05057 -27.59335 -24.71708 -22.99884 -21.86438 -20.77509 -19.46617 -18.17196 -16.98399 -16.69817 -16.40943 -15.57034 -14.90695 -14.39851 -14.33451 -14.11813 -13.63625 -13.54912 -13.28429 -12.69930 -12.02472 -11.73855 -11.71011 -11.48079 -11.25069 -11.18354 -10.46694 -10.39965 -10.26241 -9.71986 -9.68370 -8.74330 -8.18362 -8.04360 -7.80148 -6.59898 -4.01750 1.23037 1.79667 2.83525 3.04268 3.14642 3.18293 3.25727 3.59108 4.03875 4.15431 4.53292 4.68109 4.84384 4.91827 5.20318 5.22030 5.26020 5.38180 5.67290 5.68597 5.80442 5.91793 5.99704 6.37255 6.71378 6.72776 6.79328 7.11372 7.38487 7.39122 7.84045 8.14619 8.37108 8.97862 9.28463 9.77945 10.56853 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.037616 B = 0.005318 C = 0.005061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.192985 B = 5263.508977 C = 5531.463001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.027 3.973 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.303 4.303 8 H 0.105 0.895 9 N -0.551 5.551 10 C 0.414 3.586 11 O -0.577 6.577 12 C 0.097 3.903 13 N -0.464 5.464 14 C 0.272 3.728 15 N -0.506 5.506 16 C 0.043 3.957 17 C -0.070 4.070 18 C -0.134 4.134 19 C -0.111 4.111 20 C -0.099 4.099 21 C 0.063 3.937 22 H 0.274 0.726 23 H 0.394 0.606 24 H 0.111 0.889 25 H 0.104 0.896 26 H 0.210 0.790 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.390 -11.078 2.963 11.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.176 4.176 3 Si 0.758 3.242 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.432 4.432 8 H 0.123 0.877 9 N -0.187 5.187 10 C 0.198 3.802 11 O -0.461 6.461 12 C -0.029 4.029 13 N -0.151 5.151 14 C -0.014 4.014 15 N -0.226 5.226 16 C -0.075 4.075 17 C -0.090 4.090 18 C -0.154 4.154 19 C -0.131 4.131 20 C -0.120 4.120 21 C -0.047 4.047 22 H 0.084 0.916 23 H 0.227 0.773 24 H 0.129 0.871 25 H 0.122 0.878 26 H 0.226 0.774 27 H 0.142 0.858 28 H 0.142 0.858 29 H 0.143 0.857 30 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.610 -11.361 2.419 11.631 hybrid contribution -0.745 1.703 0.383 1.898 sum -0.135 -9.658 2.802 10.057 Atomic orbital electron populations 1.69607 1.06002 1.28495 1.49541 1.25303 0.95669 0.99907 0.96703 0.85764 0.79768 0.80746 0.77902 1.19116 1.20522 1.20535 1.19773 0.93486 0.81911 1.48068 0.87725 1.41822 1.09273 1.04425 1.63179 1.19951 0.88723 0.84853 0.86637 1.90615 1.13369 1.86589 1.55574 1.21607 0.90557 0.85370 1.05400 1.44891 1.36903 1.27361 1.05970 1.25221 0.93255 0.89554 0.93348 1.70420 1.18617 1.22600 1.10937 1.19035 1.00121 0.97888 0.90471 1.19918 0.98438 0.98947 0.91661 1.20543 1.00824 0.99257 0.94807 1.20795 0.97199 0.96084 0.99052 1.20000 1.01906 1.00742 0.89333 1.18825 0.98880 0.97338 0.89621 0.91607 0.77250 0.87082 0.87837 0.77384 0.85844 0.85830 0.85670 0.86244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.13 13.05 55.50 0.72 -22.41 16 2 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 20.30 29.55 -169.99 -5.02 15.27 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.30 -8.09 9.68 -14.93 -0.14 -8.23 16 8 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 9 N -0.55 -13.02 5.29 -10.96 -0.06 -13.08 16 10 C 0.41 9.20 7.85 -10.99 -0.09 9.11 16 11 O -0.58 -15.52 16.01 5.55 0.09 -15.43 16 12 C 0.10 1.56 6.64 -5.20 -0.03 1.52 16 13 N -0.46 -8.06 2.29 -117.08 -0.27 -8.33 16 14 C 0.27 4.45 12.49 -89.78 -1.12 3.33 16 15 N -0.51 -9.25 11.27 -12.05 -0.14 -9.38 16 16 C 0.04 0.79 7.23 -84.70 -0.61 0.17 16 17 C -0.07 -1.07 10.05 -39.61 -0.40 -1.46 16 18 C -0.13 -1.77 9.96 -39.97 -0.40 -2.16 16 19 C -0.11 -1.53 10.03 -39.52 -0.40 -1.93 16 20 C -0.10 -1.61 10.05 -39.50 -0.40 -2.01 16 21 C 0.06 1.15 6.88 -83.98 -0.58 0.57 16 22 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 23 H 0.39 8.68 7.90 -40.82 -0.32 8.36 16 24 H 0.11 1.38 8.13 -51.92 -0.42 0.96 16 25 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 26 H 0.21 2.50 8.06 -52.49 -0.42 2.08 16 27 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 28 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 29 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.12 1.84 8.06 -52.49 -0.42 1.41 16 LS Contribution 275.07 15.07 4.15 4.15 Total: -1.00 -33.09 275.07 -7.58 -40.67 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -2.79 Total: 9.03 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -4.26 Total: -0.50 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: 0.26 Total: -53.19 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: 0.09 Total: -15.43 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -33.09 -7.58 -40.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168659665.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.951 kcal (2) G-P(sol) polarization free energy of solvation -33.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds