Wall clock time and date at job start Sun Mar 29 2020 22:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86801 * 119.99913 * 2 1 4 4 H 1.48495 * 109.47454 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.47189 * 300.00229 * 3 2 1 6 6 H 1.48499 * 109.47180 * 59.99857 * 3 2 1 7 7 C 1.38946 * 120.00279 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00184 * 179.97438 * 7 2 1 9 9 N 1.37099 * 120.00020 * 359.97438 * 7 2 1 10 10 C 1.34782 * 120.00157 * 180.02562 * 9 7 2 11 11 O 1.21289 * 119.99690 * 359.97438 * 10 9 7 12 12 C 1.50694 * 119.99975 * 179.97438 * 10 9 7 13 13 N 1.46497 * 109.47325 * 179.97438 * 12 10 9 14 14 C 1.36038 * 126.35114 * 264.98076 * 13 12 10 15 15 N 1.30112 * 110.09814 * 179.97438 * 14 13 12 16 16 C 1.35785 * 109.64631 * 359.97438 * 15 14 13 17 17 C 1.39735 * 133.60204 * 179.97438 * 16 15 14 18 18 C 1.36605 * 119.88505 * 180.02562 * 17 16 15 19 19 C 1.38772 * 120.67413 * 359.97438 * 18 17 16 20 20 C 1.37857 * 120.44773 * 359.97248 * 19 18 17 21 21 C 1.38055 * 126.34508 * 84.97270 * 13 12 10 22 22 H 0.97001 * 120.00081 * 359.97438 * 1 2 3 23 23 H 0.96997 * 119.99711 * 359.97438 * 9 7 2 24 24 H 1.09008 * 109.47192 * 59.99659 * 12 10 9 25 25 H 1.09003 * 109.47555 * 299.99827 * 12 10 9 26 26 H 1.07991 * 124.95216 * 359.97319 * 14 13 12 27 27 H 1.08000 * 120.05646 * 359.97438 * 17 16 15 28 28 H 1.07999 * 119.66329 * 179.72373 * 18 17 16 29 29 H 1.07998 * 119.77865 * 180.02562 * 19 18 17 30 30 H 1.07997 * 120.15633 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0010 12 6 1.2440 -4.8629 0.0000 13 7 2.1960 -5.9764 -0.0007 14 6 2.6462 -6.6516 -1.0925 15 7 3.4828 -7.5800 -0.7304 16 6 3.6270 -7.5634 0.6196 17 6 4.3814 -8.3230 1.5177 18 6 4.3131 -8.0602 2.8564 19 6 3.5006 -7.0434 3.3378 20 6 2.7483 -6.2805 2.4703 21 6 2.8026 -6.5350 1.1065 22 1 -0.4850 0.8400 0.0004 23 1 0.3535 -2.3906 0.0002 24 1 0.6169 -4.9209 -0.8897 25 1 0.6177 -4.9206 0.8903 26 1 2.3522 -6.4469 -2.1112 27 1 5.0168 -9.1169 1.1540 28 1 4.8944 -8.6524 3.5477 29 1 3.4579 -6.8478 4.3990 30 1 2.1179 -5.4901 2.8500 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168659665.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:40 Heat of formation + Delta-G solvation = 18.251657 kcal Electronic energy + Delta-G solvation = -16748.646814 eV Core-core repulsion = 13929.810869 eV Total energy + Delta-G solvation = -2818.835944 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.05844 -40.15510 -38.14826 -36.16356 -34.99336 -33.38923 -31.49421 -30.22620 -29.05180 -26.53903 -24.16610 -23.07810 -22.20992 -21.02829 -20.04617 -18.19537 -18.13178 -17.93557 -16.70319 -16.66202 -15.93937 -15.88027 -15.76144 -14.93952 -14.81734 -14.49237 -14.38085 -13.59607 -13.38188 -12.94858 -12.79837 -12.66742 -12.49698 -12.38099 -12.16077 -11.62499 -11.59469 -10.95378 -10.52297 -10.11737 -9.26635 -9.03732 -8.54646 -6.04251 0.05388 0.61499 1.31385 1.40005 1.51657 1.61542 1.87220 1.91629 2.26295 2.95597 3.08201 3.11126 3.38216 3.68118 3.86008 4.07759 4.18940 4.22450 4.27581 4.53373 4.54237 4.68886 4.86745 5.24421 5.34626 5.52353 5.59818 5.62533 5.86527 6.00540 6.19114 6.48381 6.89412 7.03104 7.41013 7.96214 8.61576 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.037616 B = 0.005318 C = 0.005061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.192985 B = 5263.508977 C = 5531.463001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.003 4.003 3 Si 0.990 3.010 4 H -0.278 1.278 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.336 4.336 8 H 0.075 0.925 9 N -0.557 5.557 10 C 0.417 3.583 11 O -0.628 6.628 12 C 0.110 3.890 13 N -0.473 5.473 14 C 0.266 3.734 15 N -0.533 5.533 16 C 0.011 3.989 17 C -0.084 4.084 18 C -0.124 4.124 19 C -0.104 4.104 20 C -0.125 4.125 21 C 0.034 3.966 22 H 0.281 0.719 23 H 0.402 0.598 24 H 0.155 0.845 25 H 0.129 0.871 26 H 0.245 0.755 27 H 0.139 0.861 28 H 0.164 0.836 29 H 0.159 0.841 30 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.854 -11.481 3.722 12.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.205 4.205 3 Si 0.814 3.186 4 H -0.202 1.202 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.466 4.466 8 H 0.093 0.907 9 N -0.194 5.194 10 C 0.203 3.797 11 O -0.515 6.515 12 C -0.016 4.016 13 N -0.161 5.161 14 C -0.019 4.019 15 N -0.253 5.253 16 C -0.107 4.107 17 C -0.104 4.104 18 C -0.144 4.144 19 C -0.123 4.123 20 C -0.146 4.146 21 C -0.075 4.075 22 H 0.090 0.910 23 H 0.236 0.764 24 H 0.172 0.828 25 H 0.147 0.853 26 H 0.261 0.739 27 H 0.157 0.843 28 H 0.181 0.819 29 H 0.176 0.824 30 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.113 -11.779 3.187 12.203 hybrid contribution -0.551 1.748 0.203 1.844 sum -0.439 -10.031 3.390 10.597 Atomic orbital electron populations 1.69644 1.06650 1.29566 1.49280 1.25969 0.96504 1.02197 0.95792 0.84919 0.77906 0.77268 0.78552 1.20241 1.19340 1.19420 1.19624 0.92563 0.83877 1.50492 0.90726 1.41821 1.09526 1.04300 1.63721 1.20989 0.88380 0.86375 0.83910 1.90584 1.16028 1.87731 1.57188 1.21636 0.89810 0.81410 1.08745 1.45025 1.37410 1.27538 1.06123 1.25979 0.92534 0.88888 0.94549 1.70382 1.19667 1.23819 1.11384 1.19550 1.01279 0.98997 0.90878 1.20315 0.98467 0.99254 0.92356 1.21014 1.00028 0.98770 0.94605 1.21275 0.95620 0.95012 1.00414 1.20283 1.03274 1.01831 0.89212 1.19249 0.99704 0.98013 0.90574 0.90982 0.76362 0.82765 0.85297 0.73936 0.84277 0.81878 0.82380 0.86165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.37 13.05 21.66 0.28 -46.09 16 2 C 0.00 -0.18 5.50 84.92 0.47 0.29 16 3 Si 0.99 41.42 29.55 68.60 2.03 43.44 16 4 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 6 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 7 C -0.34 -18.29 9.68 84.04 0.81 -17.48 16 8 H 0.07 4.45 7.16 -2.91 -0.02 4.43 16 9 N -0.56 -26.48 5.29 -306.98 -1.62 -28.10 16 10 C 0.42 18.57 7.85 87.65 0.69 19.26 16 11 O -0.63 -34.62 16.01 -3.06 -0.05 -34.67 16 12 C 0.11 3.35 6.64 85.63 0.57 3.92 16 13 N -0.47 -16.11 2.29 -524.33 -1.20 -17.31 16 14 C 0.27 8.54 12.49 180.05 2.25 10.79 16 15 N -0.53 -19.45 11.27 -192.04 -2.16 -21.62 16 16 C 0.01 0.38 7.23 39.45 0.29 0.67 16 17 C -0.08 -2.47 10.05 22.25 0.22 -2.25 16 18 C -0.12 -2.95 9.96 22.02 0.22 -2.74 16 19 C -0.10 -2.62 10.03 22.31 0.22 -2.40 16 20 C -0.13 -3.99 10.05 22.32 0.22 -3.77 16 21 C 0.03 1.22 6.88 38.86 0.27 1.48 16 22 H 0.28 13.33 8.31 -92.71 -0.77 12.56 16 23 H 0.40 17.55 7.90 -92.71 -0.73 16.82 16 24 H 0.15 3.38 8.13 -2.38 -0.02 3.36 16 25 H 0.13 3.31 8.14 -2.39 -0.02 3.29 16 26 H 0.24 5.46 8.06 -2.92 -0.02 5.44 16 27 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 28 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 29 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 30 H 0.12 3.66 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -73.51 275.07 3.94 -69.57 By element: Atomic # 1 Polarization: 26.54 SS G_CDS: 0.44 Total: 26.98 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: 6.23 Total: 7.79 kcal Atomic # 7 Polarization: -108.41 SS G_CDS: -4.71 Total: -113.12 kcal Atomic # 8 Polarization: -34.62 SS G_CDS: -0.05 Total: -34.67 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.44 kcal Total: -73.51 3.94 -69.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168659665.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.823 kcal (2) G-P(sol) polarization free energy of solvation -73.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds