Wall clock time and date at job start Sun Mar 29 2020 22:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50705 * 120.00096 * 2 1 4 4 N 1.46500 * 109.47149 * 124.99350 * 3 2 1 5 5 C 1.36939 * 119.99819 * 96.12895 * 4 3 2 6 6 H 1.08002 * 120.00158 * 166.40906 * 5 4 3 7 7 C 1.38810 * 119.99858 * 346.41260 * 5 4 3 8 8 N 1.31615 * 120.00347 * 336.85300 * 7 5 4 9 9 Si 1.86803 * 120.00072 * 156.85404 * 7 5 4 10 10 H 1.48503 * 109.47214 * 265.51930 * 9 7 5 11 11 H 1.48509 * 109.46941 * 25.51700 * 9 7 5 12 12 H 1.48500 * 109.47298 * 145.51658 * 9 7 5 13 13 C 1.46499 * 120.00296 * 276.12689 * 4 3 2 14 14 H 1.09005 * 110.00771 * 358.62625 * 13 4 3 15 15 C 1.53875 * 110.02717 * 237.19417 * 13 4 3 16 16 C 1.54168 * 108.70260 * 193.52549 * 15 13 4 17 17 S 1.82922 * 105.08289 * 27.91170 * 16 15 13 18 18 O 1.42101 * 109.35159 * 244.47058 * 17 16 15 19 19 O 1.42096 * 109.47194 * 111.31076 * 17 16 15 20 20 C 1.55041 * 110.02572 * 120.00236 * 13 4 3 21 21 H 1.08000 * 120.00326 * 0.02562 * 1 2 3 22 22 H 1.08002 * 119.99999 * 180.02562 * 1 2 3 23 23 H 1.08000 * 120.00326 * 179.97438 * 2 1 3 24 24 H 1.09001 * 109.46675 * 4.99391 * 3 2 1 25 25 H 1.08994 * 109.46892 * 244.99716 * 3 2 1 26 26 H 0.97002 * 120.00468 * 179.97438 * 8 7 5 27 27 H 1.08998 * 109.64756 * 313.38250 * 15 13 4 28 28 H 1.09006 * 109.64635 * 73.67581 * 15 13 4 29 29 H 1.08998 * 110.31920 * 269.00539 * 16 15 13 30 30 H 1.08997 * 110.31499 * 146.81340 * 16 15 13 31 31 H 1.09003 * 110.79158 * 279.99266 * 20 13 4 32 32 H 1.09003 * 110.79145 * 43.45770 * 20 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9936 1.3320 1.1315 5 6 4.3036 0.9770 0.9495 6 1 5.0349 1.2012 1.7120 7 6 4.6917 0.3290 -0.2151 8 7 3.8068 -0.3429 -0.9206 9 14 6.4700 0.4107 -0.7812 10 1 6.6294 1.5214 -1.7540 11 1 7.3519 0.6481 0.3899 12 1 6.8426 -0.8723 -1.4294 13 6 2.5224 1.7386 2.4577 14 1 1.4671 2.0079 2.4121 15 6 3.3502 2.9310 2.9683 16 6 3.0731 3.1167 4.4735 17 16 2.6318 1.4503 5.0854 18 8 1.2833 1.4551 5.5335 19 8 3.6602 0.9722 5.9414 20 6 2.7328 0.5855 3.4725 21 1 -0.5401 0.9353 -0.0004 22 1 -0.5400 -0.9353 0.0004 23 1 1.8500 -0.9353 0.0004 24 1 1.3585 2.1316 0.0895 25 1 2.6213 1.4026 -0.9313 26 1 4.0779 -0.7954 -1.7346 27 1 4.4109 2.7344 2.8124 28 1 3.0637 3.8339 2.4289 29 1 2.2431 3.8071 4.6233 30 1 3.9663 3.4817 4.9805 31 1 1.9414 -0.1586 3.3823 32 1 3.7130 0.1274 3.3399 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171748873.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:28 Heat of formation + Delta-G solvation = -20.045921 kcal Electronic energy + Delta-G solvation = -16573.287153 eV Core-core repulsion = 13855.941701 eV Total energy + Delta-G solvation = -2717.345452 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -37.46398 -36.65958 -35.66559 -34.36653 -32.22751 -30.69862 -28.72492 -25.64485 -24.74872 -22.56677 -20.15083 -18.86770 -18.45516 -16.89653 -16.35798 -16.01308 -15.21344 -14.97946 -14.22550 -13.95571 -13.83182 -13.52695 -12.99356 -12.60124 -12.07182 -11.83561 -11.73386 -11.65421 -11.56019 -11.32553 -11.00815 -10.71891 -10.56836 -10.33613 -10.21068 -10.15332 -9.86178 -9.73447 -8.72596 -8.24938 -7.10640 -5.99556 -3.35547 0.44518 2.90804 3.27792 3.35114 3.37131 3.41990 3.96658 4.30425 4.36775 4.81762 5.04899 5.10859 5.20503 5.37296 5.49516 5.53637 5.88770 6.05049 6.16406 6.19245 6.27272 6.48766 6.56760 6.60589 7.22764 7.24015 7.56120 7.79419 7.92151 8.19884 8.98019 9.60139 10.04915 11.05701 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.023271 B = 0.009085 C = 0.007344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.914374 B = 3081.325626 C = 3811.592182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 C -0.082 4.082 3 C 0.188 3.812 4 N -0.570 5.570 5 C -0.265 4.265 6 H 0.080 0.920 7 C 0.007 3.993 8 N -0.894 5.894 9 Si 0.901 3.099 10 H -0.287 1.287 11 H -0.278 1.278 12 H -0.292 1.292 13 C 0.179 3.821 14 H 0.078 0.922 15 C -0.127 4.127 16 C -0.588 4.588 17 S 2.368 3.632 18 O -0.954 6.954 19 O -0.955 6.955 20 C -0.580 4.580 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.125 0.875 24 H 0.020 0.980 25 H 0.095 0.905 26 H 0.256 0.744 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.376 5.307 5.001 7.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 C -0.102 4.102 3 C 0.064 3.936 4 N -0.289 5.289 5 C -0.393 4.393 6 H 0.098 0.902 7 C -0.192 4.192 8 N -0.538 5.538 9 Si 0.730 3.270 10 H -0.214 1.214 11 H -0.203 1.203 12 H -0.218 1.218 13 C 0.068 3.932 14 H 0.096 0.904 15 C -0.167 4.167 16 C -0.719 4.719 17 S 2.554 3.446 18 O -0.951 6.951 19 O -0.952 6.952 20 C -0.715 4.715 21 H 0.094 0.906 22 H 0.094 0.906 23 H 0.142 0.858 24 H 0.038 0.962 25 H 0.113 0.887 26 H 0.066 0.934 27 H 0.109 0.891 28 H 0.102 0.898 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.550 4.900 5.767 7.986 hybrid contribution 1.077 0.084 -1.114 1.552 sum -1.473 4.983 4.653 6.975 Atomic orbital electron populations 1.23535 0.96547 0.99529 1.11915 1.24199 0.94061 1.02613 0.89330 1.20062 0.90311 0.90780 0.92464 1.44092 1.07312 1.76183 1.01269 1.19213 0.83552 1.33110 1.03465 0.90238 1.24816 0.97759 0.97373 0.99291 1.70177 1.33246 1.32677 1.17660 0.86299 0.84604 0.77173 0.78889 1.21401 1.20340 1.21829 1.20946 0.96907 0.88948 0.86447 0.90364 1.22433 1.04103 1.00991 0.89217 1.30399 1.11379 1.22088 1.08026 1.09434 0.75194 0.80545 0.79413 1.93564 1.34842 1.86225 1.80472 1.93559 1.58680 1.78679 1.64307 1.31086 1.12274 1.10988 1.17148 0.90567 0.90568 0.85770 0.96189 0.88727 0.93390 0.89095 0.89800 0.85402 0.85318 0.85372 0.83827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -5.21 14.32 29.02 0.42 -4.80 16 2 C -0.08 -1.75 8.77 -36.02 -0.32 -2.07 16 3 C 0.19 4.05 5.28 -5.19 -0.03 4.02 16 4 N -0.57 -12.16 2.52 -165.28 -0.42 -12.57 16 5 C -0.26 -6.24 8.17 -15.06 -0.12 -6.36 16 6 H 0.08 1.81 6.76 -52.49 -0.35 1.46 16 7 C 0.01 0.16 4.87 -17.43 -0.08 0.08 16 8 N -0.89 -22.83 8.82 55.49 0.49 -22.35 16 9 Si 0.90 19.96 29.61 -169.99 -5.03 14.93 16 10 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 12 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.18 3.10 3.08 -66.40 -0.20 2.89 16 14 H 0.08 1.25 7.90 -51.93 -0.41 0.84 16 15 C -0.13 -1.86 5.84 -25.67 -0.15 -2.01 16 16 C -0.59 -7.10 7.26 37.77 0.27 -6.83 16 17 S 2.37 35.14 6.10 -107.50 -0.66 34.49 16 18 O -0.95 -16.66 18.15 -57.73 -1.05 -17.71 16 19 O -0.96 -17.15 18.15 -57.73 -1.05 -18.19 16 20 C -0.58 -9.53 6.77 38.24 0.26 -9.27 16 21 H 0.08 1.32 7.84 -52.49 -0.41 0.91 16 22 H 0.08 1.35 8.06 -52.49 -0.42 0.92 16 23 H 0.12 3.01 6.78 -52.49 -0.36 2.65 16 24 H 0.02 0.39 7.70 -51.93 -0.40 -0.01 16 25 H 0.09 2.27 6.17 -51.93 -0.32 1.95 16 26 H 0.26 6.47 8.31 -40.82 -0.34 6.13 16 27 H 0.09 1.42 6.59 -51.93 -0.34 1.07 16 28 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.13 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.13 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.13 2.07 8.14 -51.93 -0.42 1.65 16 32 H 0.14 2.53 7.34 -51.93 -0.38 2.15 16 LS Contribution 275.06 15.07 4.15 4.15 Total: -1.00 -29.60 275.06 -7.75 -37.35 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -4.23 Total: 4.25 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: 0.04 Total: -24.34 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: 0.07 Total: -34.92 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: -2.10 Total: -35.91 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.03 Total: 14.93 kcal Atomic # 16 Polarization: 35.14 SS G_CDS: -0.66 Total: 34.49 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.60 -7.75 -37.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171748873.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.301 kcal (2) G-P(sol) polarization free energy of solvation -29.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds