Wall clock time and date at job start Sun Mar 29 2020 22:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50695 * 120.00241 * 2 1 4 4 N 1.46508 * 109.47076 * 124.16587 * 3 2 1 5 5 C 1.36937 * 119.99940 * 263.52267 * 4 3 2 6 6 H 1.08001 * 119.99557 * 145.40376 * 5 4 3 7 7 C 1.38806 * 120.00311 * 325.41146 * 5 4 3 8 8 N 1.31622 * 120.00108 * 159.50085 * 7 5 4 9 9 Si 1.86803 * 120.00054 * 339.50048 * 7 5 4 10 10 H 1.48494 * 109.47311 * 95.37844 * 9 7 5 11 11 H 1.48497 * 109.47174 * 215.38339 * 9 7 5 12 12 H 1.48499 * 109.46909 * 335.37889 * 9 7 5 13 13 C 1.46496 * 119.99546 * 83.52578 * 4 3 2 14 14 H 1.08999 * 110.05601 * 1.40426 * 13 4 3 15 15 C 1.53884 * 110.02249 * 122.81021 * 13 4 3 16 16 C 1.54168 * 108.69986 * 166.46892 * 15 13 4 17 17 S 1.82916 * 105.08724 * 332.08975 * 16 15 13 18 18 O 1.42097 * 109.35459 * 115.52855 * 17 16 15 19 19 O 1.42102 * 109.35094 * 248.72609 * 17 16 15 20 20 C 1.55047 * 110.02511 * 239.99436 * 13 4 3 21 21 H 1.08000 * 119.99866 * 354.92882 * 1 2 3 22 22 H 1.08007 * 120.00327 * 174.91914 * 1 2 3 23 23 H 1.08001 * 119.99902 * 179.97438 * 2 1 3 24 24 H 1.08996 * 109.47095 * 4.16952 * 3 2 1 25 25 H 1.09000 * 109.47263 * 244.16625 * 3 2 1 26 26 H 0.97009 * 119.99794 * 180.02562 * 8 7 5 27 27 H 1.09000 * 109.64730 * 46.61669 * 15 13 4 28 28 H 1.09000 * 109.64690 * 286.31850 * 15 13 4 29 29 H 1.09003 * 110.31528 * 213.18743 * 16 15 13 30 30 H 1.09004 * 110.32208 * 90.99362 * 16 15 13 31 31 H 1.09004 * 110.78472 * 80.01239 * 20 13 4 32 32 H 1.08991 * 110.95931 * 316.62693 * 20 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9795 1.3400 1.1429 5 6 2.6046 1.9657 2.3019 6 1 2.9281 1.5751 3.2554 7 6 1.8086 3.1017 2.2512 8 7 1.1202 3.4708 3.3106 9 14 1.7144 4.1069 0.6795 10 1 0.5296 3.6829 -0.1090 11 1 1.5931 5.5473 1.0196 12 1 2.9457 3.8895 -0.1216 13 6 4.2964 0.7058 1.0457 14 1 4.4344 0.2814 0.0513 15 6 5.4007 1.7373 1.3365 16 6 6.7290 0.9884 1.5640 17 16 6.2455 -0.6535 2.2091 18 8 6.6291 -1.6566 1.2787 19 8 6.6401 -0.7594 3.5701 20 6 4.4319 -0.4038 2.1201 21 1 -0.5400 0.9317 0.0827 22 1 -0.5401 -0.9317 -0.0828 23 1 1.8499 -0.9353 0.0004 24 1 1.3576 2.1322 0.0747 25 1 2.6330 1.3958 -0.9250 26 1 0.5637 4.2646 3.2751 27 1 5.1439 2.3074 2.2293 28 1 5.5023 2.4143 0.4883 29 1 7.3411 1.5170 2.2948 30 1 7.2692 0.8814 0.6232 31 1 3.9310 -1.3170 1.7985 32 1 4.0402 -0.0671 3.0799 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171748878.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:32 Heat of formation + Delta-G solvation = -19.342285 kcal Electronic energy + Delta-G solvation = -16568.534830 eV Core-core repulsion = 13851.219890 eV Total energy + Delta-G solvation = -2717.314940 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -37.65711 -36.72160 -35.72162 -34.53026 -32.56084 -31.07221 -29.02516 -25.79171 -24.94551 -22.74761 -20.05682 -19.55859 -18.51144 -17.10383 -16.30380 -16.13162 -15.39575 -15.06690 -14.57903 -14.46990 -13.99020 -13.48136 -13.16061 -12.62990 -12.36154 -12.24113 -11.89966 -11.76387 -11.67107 -11.55977 -11.40520 -11.01347 -10.60584 -10.47357 -10.27365 -10.07440 -9.97829 -9.61448 -8.79039 -8.69252 -7.15324 -6.15708 -3.59910 0.39359 2.82462 2.89885 3.16176 3.33103 3.35394 3.91030 4.28769 4.33676 4.65532 4.94170 5.08653 5.16508 5.20798 5.33198 5.41052 5.59743 5.79168 5.80587 6.01265 6.04591 6.13654 6.32760 6.45099 6.57989 6.65134 7.16183 7.39485 7.80880 8.16047 8.73686 9.50038 9.84630 10.98628 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.027249 B = 0.008743 C = 0.007769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.299053 B = 3201.694470 C = 3603.276902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 C 0.151 3.849 4 N -0.581 5.581 5 C -0.275 4.275 6 H 0.087 0.913 7 C 0.040 3.960 8 N -0.892 5.892 9 Si 0.878 3.122 10 H -0.285 1.285 11 H -0.300 1.300 12 H -0.267 1.267 13 C 0.180 3.820 14 H 0.079 0.921 15 C -0.127 4.127 16 C -0.587 4.587 17 S 2.374 3.626 18 O -0.954 6.954 19 O -0.951 6.951 20 C -0.588 4.588 21 H 0.092 0.908 22 H 0.086 0.914 23 H 0.099 0.901 24 H 0.067 0.933 25 H 0.051 0.949 26 H 0.266 0.734 27 H 0.100 0.900 28 H 0.082 0.918 29 H 0.131 0.869 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.117 -4.205 -6.537 9.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.170 4.170 3 C 0.026 3.974 4 N -0.301 5.301 5 C -0.403 4.403 6 H 0.104 0.896 7 C -0.162 4.162 8 N -0.532 5.532 9 Si 0.709 3.291 10 H -0.213 1.213 11 H -0.229 1.229 12 H -0.192 1.192 13 C 0.069 3.931 14 H 0.097 0.903 15 C -0.167 4.167 16 C -0.718 4.718 17 S 2.560 3.440 18 O -0.951 6.951 19 O -0.948 6.948 20 C -0.722 4.722 21 H 0.110 0.890 22 H 0.104 0.896 23 H 0.117 0.883 24 H 0.085 0.915 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.119 0.881 28 H 0.101 0.899 29 H 0.149 0.851 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.580 -4.832 -6.132 10.210 hybrid contribution -0.690 1.274 -0.940 1.727 sum 5.889 -3.558 -7.072 9.867 Atomic orbital electron populations 1.23651 0.96154 1.00993 1.03378 1.23673 0.96220 0.99706 0.97432 1.20581 0.92676 0.94199 0.89896 1.44011 1.09146 1.63681 1.13252 1.18703 1.30904 1.05606 0.85123 0.89597 1.25390 0.97604 0.96828 0.96375 1.69837 1.27589 1.25978 1.29819 0.86958 0.78293 0.79452 0.84442 1.21308 1.22853 1.19174 1.20929 0.87238 0.90023 0.94895 0.90311 1.22424 0.88719 0.99772 1.05830 1.30380 1.07228 1.21789 1.12403 1.09259 0.80806 0.78417 0.75507 1.93565 1.81874 1.55366 1.64341 1.93576 1.81555 1.86393 1.33269 1.30943 1.20869 1.08986 1.11366 0.88994 0.89559 0.88322 0.91486 0.93117 0.92416 0.88135 0.89946 0.85084 0.85444 0.85432 0.83554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.51 14.32 29.02 0.42 -3.10 16 2 C -0.15 -2.68 9.83 -36.03 -0.35 -3.03 16 3 C 0.15 2.97 4.63 -5.19 -0.02 2.95 16 4 N -0.58 -12.04 2.13 -165.27 -0.35 -12.39 16 5 C -0.28 -6.82 8.46 -15.06 -0.13 -6.95 16 6 H 0.09 2.28 6.85 -52.49 -0.36 1.92 16 7 C 0.04 1.05 5.32 -17.43 -0.09 0.96 16 8 N -0.89 -25.50 13.97 55.49 0.78 -24.72 16 9 Si 0.88 20.44 24.77 -169.99 -4.21 16.23 16 10 H -0.28 -6.51 6.68 56.52 0.38 -6.13 16 11 H -0.30 -7.23 7.11 56.52 0.40 -6.82 16 12 H -0.27 -5.91 7.09 56.52 0.40 -5.51 16 13 C 0.18 2.97 3.08 -66.39 -0.20 2.77 16 14 H 0.08 1.12 7.91 -51.93 -0.41 0.71 16 15 C -0.13 -1.92 5.84 -25.66 -0.15 -2.07 16 16 C -0.59 -7.09 7.26 37.77 0.27 -6.81 16 17 S 2.37 33.80 6.11 -107.50 -0.66 33.15 16 18 O -0.95 -15.77 18.15 -57.71 -1.05 -16.82 16 19 O -0.95 -16.77 18.15 -57.71 -1.05 -17.82 16 20 C -0.59 -9.01 6.77 38.24 0.26 -8.75 16 21 H 0.09 1.69 7.84 -52.49 -0.41 1.27 16 22 H 0.09 1.28 8.06 -52.48 -0.42 0.85 16 23 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 24 H 0.07 1.46 2.71 -51.93 -0.14 1.32 16 25 H 0.05 0.88 8.06 -51.93 -0.42 0.46 16 26 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.10 1.71 7.25 -51.93 -0.38 1.34 16 28 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.13 1.41 8.14 -51.93 -0.42 0.98 16 30 H 0.13 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.13 1.77 8.14 -51.93 -0.42 1.35 16 32 H 0.15 2.48 6.66 -51.93 -0.35 2.13 16 LS Contribution 273.94 15.07 4.13 4.13 Total: -1.00 -32.14 273.94 -6.57 -38.72 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -4.16 Total: 3.57 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: 0.00 Total: -24.04 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.42 Total: -37.11 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -2.09 Total: -34.64 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.21 Total: 16.23 kcal Atomic # 16 Polarization: 33.80 SS G_CDS: -0.66 Total: 33.15 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -32.14 -6.57 -38.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171748878.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.373 kcal (2) G-P(sol) polarization free energy of solvation -32.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds