Wall clock time and date at job start Sun Mar 29 2020 22:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50695 * 120.00241 * 2 1 4 4 N 1.46508 * 109.47076 * 124.16587 * 3 2 1 5 5 C 1.36937 * 119.99940 * 263.52267 * 4 3 2 6 6 H 1.08001 * 119.99557 * 145.40376 * 5 4 3 7 7 C 1.38806 * 120.00311 * 325.41146 * 5 4 3 8 8 N 1.31622 * 120.00108 * 159.50085 * 7 5 4 9 9 Si 1.86803 * 120.00054 * 339.50048 * 7 5 4 10 10 H 1.48494 * 109.47311 * 95.37844 * 9 7 5 11 11 H 1.48497 * 109.47174 * 215.38339 * 9 7 5 12 12 H 1.48499 * 109.46909 * 335.37889 * 9 7 5 13 13 C 1.46496 * 119.99546 * 83.52578 * 4 3 2 14 14 H 1.08999 * 110.05601 * 1.40426 * 13 4 3 15 15 C 1.53884 * 110.02249 * 122.81021 * 13 4 3 16 16 C 1.54168 * 108.69986 * 166.46892 * 15 13 4 17 17 S 1.82916 * 105.08724 * 332.08975 * 16 15 13 18 18 O 1.42097 * 109.35459 * 115.52855 * 17 16 15 19 19 O 1.42102 * 109.35094 * 248.72609 * 17 16 15 20 20 C 1.55047 * 110.02511 * 239.99436 * 13 4 3 21 21 H 1.08000 * 119.99866 * 354.92882 * 1 2 3 22 22 H 1.08007 * 120.00327 * 174.91914 * 1 2 3 23 23 H 1.08001 * 119.99902 * 179.97438 * 2 1 3 24 24 H 1.08996 * 109.47095 * 4.16952 * 3 2 1 25 25 H 1.09000 * 109.47263 * 244.16625 * 3 2 1 26 26 H 0.97009 * 119.99794 * 180.02562 * 8 7 5 27 27 H 1.09000 * 109.64730 * 46.61669 * 15 13 4 28 28 H 1.09000 * 109.64690 * 286.31850 * 15 13 4 29 29 H 1.09003 * 110.31528 * 213.18743 * 16 15 13 30 30 H 1.09004 * 110.32208 * 90.99362 * 16 15 13 31 31 H 1.09004 * 110.78472 * 80.01239 * 20 13 4 32 32 H 1.08991 * 110.95931 * 316.62693 * 20 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9795 1.3400 1.1429 5 6 2.6046 1.9657 2.3019 6 1 2.9281 1.5751 3.2554 7 6 1.8086 3.1017 2.2512 8 7 1.1202 3.4708 3.3106 9 14 1.7144 4.1069 0.6795 10 1 0.5296 3.6829 -0.1090 11 1 1.5931 5.5473 1.0196 12 1 2.9457 3.8895 -0.1216 13 6 4.2964 0.7058 1.0457 14 1 4.4344 0.2814 0.0513 15 6 5.4007 1.7373 1.3365 16 6 6.7290 0.9884 1.5640 17 16 6.2455 -0.6535 2.2091 18 8 6.6291 -1.6566 1.2787 19 8 6.6401 -0.7594 3.5701 20 6 4.4319 -0.4038 2.1201 21 1 -0.5400 0.9317 0.0827 22 1 -0.5401 -0.9317 -0.0828 23 1 1.8499 -0.9353 0.0004 24 1 1.3576 2.1322 0.0747 25 1 2.6330 1.3958 -0.9250 26 1 0.5637 4.2646 3.2751 27 1 5.1439 2.3074 2.2293 28 1 5.5023 2.4143 0.4883 29 1 7.3411 1.5170 2.2948 30 1 7.2692 0.8814 0.6232 31 1 3.9310 -1.3170 1.7985 32 1 4.0402 -0.0671 3.0799 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171748878.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:31 Heat of formation + Delta-G solvation = -43.399150 kcal Electronic energy + Delta-G solvation = -16569.578014 eV Core-core repulsion = 13851.219890 eV Total energy + Delta-G solvation = -2718.358124 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.12126 -37.99890 -37.00415 -35.88188 -34.31262 -32.64474 -30.29452 -27.48246 -26.31282 -24.18487 -21.51294 -21.01486 -19.70144 -18.72156 -17.64038 -17.46359 -16.99807 -16.39596 -16.00664 -15.94423 -15.14995 -14.86505 -14.70158 -14.38726 -13.89592 -13.52263 -13.21862 -13.08498 -13.05642 -12.99122 -12.84175 -12.47179 -12.17145 -11.94400 -11.72929 -11.55558 -11.32498 -11.20324 -10.60946 -10.16872 -8.87146 -8.16056 -5.55662 -0.77631 1.31686 1.43026 1.48767 1.52761 1.71072 2.42826 2.74757 3.05665 3.15403 3.32289 3.80227 3.97449 3.99739 4.12971 4.17160 4.24969 4.40940 4.57468 4.69889 4.85653 4.89820 4.97446 5.11732 5.26133 5.40545 5.76973 5.93996 6.01366 6.21844 6.94496 7.61891 7.99632 9.02682 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.027249 B = 0.008743 C = 0.007769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.299053 B = 3201.694470 C = 3603.276902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C 0.140 3.860 4 N -0.592 5.592 5 C -0.247 4.247 6 H 0.055 0.945 7 C -0.020 4.020 8 N -0.950 5.950 9 Si 0.936 3.064 10 H -0.283 1.283 11 H -0.318 1.318 12 H -0.242 1.242 13 C 0.168 3.832 14 H 0.115 0.885 15 C -0.130 4.130 16 C -0.560 4.560 17 S 2.401 3.599 18 O -0.971 6.971 19 O -0.988 6.988 20 C -0.592 4.592 21 H 0.074 0.926 22 H 0.113 0.887 23 H 0.121 0.879 24 H 0.043 0.957 25 H 0.083 0.917 26 H 0.261 0.739 27 H 0.073 0.927 28 H 0.097 0.903 29 H 0.150 0.850 30 H 0.164 0.836 31 H 0.140 0.860 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.827 -4.995 -9.042 12.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.179 4.179 3 C 0.017 3.983 4 N -0.313 5.313 5 C -0.376 4.376 6 H 0.072 0.928 7 C -0.217 4.217 8 N -0.594 5.594 9 Si 0.766 3.234 10 H -0.210 1.210 11 H -0.247 1.247 12 H -0.165 1.165 13 C 0.059 3.941 14 H 0.133 0.867 15 C -0.170 4.170 16 C -0.693 4.693 17 S 2.589 3.411 18 O -0.968 6.968 19 O -0.985 6.985 20 C -0.725 4.725 21 H 0.092 0.908 22 H 0.131 0.869 23 H 0.139 0.861 24 H 0.061 0.939 25 H 0.101 0.899 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.116 0.884 29 H 0.168 0.832 30 H 0.182 0.818 31 H 0.158 0.842 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 8.308 -5.680 -8.666 13.281 hybrid contribution -1.170 1.409 -0.157 1.839 sum 7.137 -4.270 -8.823 12.125 Atomic orbital electron populations 1.23807 0.96302 1.01474 1.02690 1.23728 0.96409 0.99777 0.97964 1.20720 0.92738 0.94309 0.90582 1.44070 1.11399 1.63578 1.12244 1.18578 1.28649 1.04589 0.85818 0.92763 1.25971 0.98307 0.98367 0.99023 1.69980 1.30049 1.26905 1.32438 0.86010 0.79304 0.76748 0.81382 1.21045 1.24713 1.16516 1.21330 0.85601 0.90172 0.97019 0.86727 1.22366 0.89730 0.99621 1.05250 1.30240 1.06190 1.18256 1.14588 1.08417 0.79419 0.79042 0.74270 1.93540 1.81719 1.57142 1.64406 1.93530 1.81774 1.87454 1.35729 1.30954 1.22549 1.09168 1.09859 0.90791 0.86914 0.86113 0.93916 0.89948 0.93044 0.90785 0.88409 0.83156 0.81774 0.84155 0.85990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.70 14.32 67.79 0.97 -5.72 16 2 C -0.16 -5.26 9.83 25.65 0.25 -5.01 16 3 C 0.14 5.16 4.63 85.63 0.40 5.56 16 4 N -0.59 -23.50 2.13 -676.81 -1.44 -24.94 16 5 C -0.25 -12.37 8.46 84.03 0.71 -11.66 16 6 H 0.05 3.02 6.85 -2.91 -0.02 3.00 16 7 C -0.02 -1.10 5.32 84.86 0.45 -0.65 16 8 N -0.95 -56.61 13.97 21.65 0.30 -56.31 16 9 Si 0.94 42.49 24.77 68.60 1.70 44.19 16 10 H -0.28 -12.53 6.68 99.48 0.66 -11.86 16 11 H -0.32 -15.13 7.11 99.48 0.71 -14.42 16 12 H -0.24 -9.81 7.09 99.48 0.71 -9.10 16 13 C 0.17 5.05 3.08 45.99 0.14 5.20 16 14 H 0.11 2.67 7.91 -2.39 -0.02 2.66 16 15 C -0.13 -3.50 5.84 31.29 0.18 -3.32 16 16 C -0.56 -11.12 7.26 72.38 0.53 -10.59 16 17 S 2.40 62.68 6.11 -56.49 -0.34 62.33 16 18 O -0.97 -29.12 18.15 -127.49 -2.31 -31.43 16 19 O -0.99 -33.79 18.15 -127.49 -2.31 -36.11 16 20 C -0.59 -17.28 6.77 72.68 0.49 -16.79 16 21 H 0.07 2.68 7.84 -2.91 -0.02 2.65 16 22 H 0.11 3.04 8.06 -2.91 -0.02 3.02 16 23 H 0.12 3.46 8.06 -2.91 -0.02 3.43 16 24 H 0.04 1.80 2.71 -2.39 -0.01 1.79 16 25 H 0.08 2.49 8.06 -2.39 -0.02 2.47 16 26 H 0.26 14.92 8.31 -92.70 -0.77 14.15 16 27 H 0.07 2.43 7.25 -2.39 -0.02 2.41 16 28 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.15 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.16 2.23 8.14 -2.38 -0.02 2.21 16 31 H 0.14 3.63 8.14 -2.38 -0.02 3.62 16 32 H 0.12 4.22 6.66 -2.39 -0.02 4.20 16 Total: -1.00 -70.86 273.94 0.77 -70.09 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 1.06 Total: 15.16 kcal Atomic # 6 Polarization: -47.11 SS G_CDS: 4.12 Total: -42.98 kcal Atomic # 7 Polarization: -80.11 SS G_CDS: -1.14 Total: -81.25 kcal Atomic # 8 Polarization: -62.91 SS G_CDS: -4.63 Total: -67.54 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 1.70 Total: 44.19 kcal Atomic # 16 Polarization: 62.68 SS G_CDS: -0.34 Total: 62.33 kcal Total: -70.86 0.77 -70.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171748878.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.689 kcal (2) G-P(sol) polarization free energy of solvation -70.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds