Wall clock time and date at job start Sun Mar 29 2020 22:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34233 * 116.99909 * 2 1 4 4 O 1.20818 * 120.00060 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99688 * 179.72459 * 3 2 1 6 6 C 1.52999 * 109.46913 * 180.27306 * 5 3 2 7 7 H 1.08999 * 109.47446 * 305.00417 * 6 5 3 8 8 C 1.53239 * 109.47017 * 185.00679 * 6 5 3 9 9 S 1.81738 * 108.80068 * 182.33786 * 8 6 5 10 10 C 1.81741 * 102.30488 * 54.54569 * 9 8 6 11 11 C 1.53241 * 108.79646 * 305.45876 * 10 9 8 12 12 N 1.46377 * 109.48725 * 57.65605 * 11 10 9 13 13 C 1.36939 * 119.65072 * 114.89173 * 12 11 10 14 14 H 1.07988 * 120.00579 * 159.66561 * 13 12 11 15 15 C 1.38819 * 119.99549 * 339.66310 * 13 12 11 16 16 N 1.31614 * 119.99659 * 140.39273 * 15 13 12 17 17 Si 1.86800 * 120.00028 * 320.39671 * 15 13 12 18 18 H 1.48501 * 109.47284 * 84.77502 * 17 15 13 19 19 H 1.48507 * 109.46826 * 204.77188 * 17 15 13 20 20 H 1.48495 * 109.47125 * 324.77287 * 17 15 13 21 21 H 1.08996 * 109.47111 * 299.99900 * 1 2 3 22 22 H 1.08999 * 109.46705 * 60.00150 * 1 2 3 23 23 H 1.08999 * 109.46695 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47453 * 300.27780 * 5 3 2 25 25 H 1.09004 * 109.47362 * 60.27991 * 5 3 2 26 26 H 1.08998 * 109.58711 * 302.13788 * 8 6 5 27 27 H 1.09007 * 109.58417 * 62.54730 * 8 6 5 28 28 H 1.08997 * 109.58593 * 185.66486 * 10 9 8 29 29 H 1.09004 * 109.69589 * 65.31719 * 10 9 8 30 30 H 1.08997 * 109.46771 * 297.65224 * 11 10 9 31 31 H 1.09005 * 109.46463 * 177.65858 * 11 10 9 32 32 H 0.97009 * 119.99949 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0063 6 6 4.0001 2.7421 0.0118 7 1 3.5412 3.2598 -0.8305 8 6 5.5256 2.8241 -0.1079 9 16 6.0262 4.5694 -0.0297 10 6 5.2645 5.1215 1.5253 11 6 3.7654 4.8069 1.4798 12 7 3.5740 3.3721 1.2625 13 6 2.9903 2.6108 2.2398 14 1 2.5485 1.6576 1.9901 15 6 2.9667 3.0645 3.5515 16 7 1.8954 2.8779 4.2931 17 14 4.4551 3.9399 4.2640 18 1 4.3985 5.3809 3.9097 19 1 4.4551 3.7932 5.7418 20 1 5.6948 3.3415 3.7071 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 3.9525 0.7784 0.8965 25 1 3.9597 0.7831 -0.8835 26 1 5.9866 2.2746 0.7128 27 1 5.8410 2.3960 -1.0595 28 1 5.4090 6.1956 1.6418 29 1 5.7223 4.5981 2.3648 30 1 3.3022 5.3628 0.6646 31 1 3.3048 5.0959 2.4245 32 1 1.8787 3.1953 5.2096 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174731745.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:14 Heat of formation + Delta-G solvation = -41.333886 kcal Electronic energy + Delta-G solvation = -16985.271499 eV Core-core repulsion = 14267.002932 eV Total energy + Delta-G solvation = -2718.268567 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.90637 -37.35695 -35.53456 -32.89509 -31.83407 -28.93807 -28.61800 -26.49741 -24.18395 -22.46999 -20.87466 -19.39104 -17.18831 -16.96750 -16.51489 -15.86690 -15.65623 -14.94095 -14.42606 -14.02752 -13.64226 -13.16595 -12.89087 -12.85473 -12.57122 -12.12591 -11.83589 -11.59360 -11.49627 -11.04857 -10.88407 -10.66667 -10.29739 -10.15012 -10.14590 -9.66874 -9.48786 -9.15839 -8.52788 -7.49722 -7.00504 -6.12672 -3.24780 2.30649 2.95637 3.05197 3.26361 3.38320 3.43834 3.46091 4.45851 4.64875 5.08465 5.27427 5.43224 5.50784 5.57071 5.61210 5.68923 5.72391 5.76348 5.86926 5.97072 6.01096 6.07438 6.18940 6.55309 6.64658 6.79142 7.05242 7.78921 8.15084 8.54870 8.80868 9.63102 9.97454 11.00717 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.020543 B = 0.012296 C = 0.008501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.688971 B = 2276.563424 C = 3292.779226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.373 6.373 3 C 0.465 3.535 4 O -0.473 6.473 5 C -0.101 4.101 6 C 0.190 3.810 7 H 0.063 0.937 8 C -0.098 4.098 9 S -0.287 6.287 10 C -0.114 4.114 11 C 0.142 3.858 12 N -0.589 5.589 13 C -0.274 4.274 14 H 0.085 0.915 15 C 0.039 3.961 16 N -0.869 5.869 17 Si 0.841 3.159 18 H -0.279 1.279 19 H -0.302 1.302 20 H -0.276 1.276 21 H 0.065 0.935 22 H 0.054 0.946 23 H 0.091 0.909 24 H 0.114 0.886 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.096 -3.014 -8.424 9.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.291 6.291 3 C 0.306 3.694 4 O -0.357 6.357 5 C -0.141 4.141 6 C 0.081 3.919 7 H 0.080 0.920 8 C -0.249 4.249 9 S -0.060 6.060 10 C -0.264 4.264 11 C 0.014 3.986 12 N -0.310 5.310 13 C -0.401 4.401 14 H 0.102 0.898 15 C -0.162 4.162 16 N -0.508 5.508 17 Si 0.670 3.330 18 H -0.206 1.206 19 H -0.230 1.230 20 H -0.202 1.202 21 H 0.083 0.917 22 H 0.073 0.927 23 H 0.109 0.891 24 H 0.132 0.868 25 H 0.112 0.888 26 H 0.102 0.898 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.101 0.899 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.361 -2.092 -8.982 9.816 hybrid contribution 0.141 -0.134 1.630 1.642 sum 3.502 -2.226 -7.352 8.442 Atomic orbital electron populations 1.23093 0.77341 1.02560 1.02416 1.86455 1.22760 1.34620 1.85308 1.23318 0.91909 0.81210 0.72985 1.90715 1.66527 1.35725 1.42740 1.21485 0.88374 0.99209 1.05022 1.20435 0.89592 0.90819 0.91059 0.91974 1.24033 1.01936 0.94088 1.04823 1.86198 1.71922 1.14055 1.33863 1.24406 1.02655 1.03337 0.95956 1.21144 0.90480 0.85143 1.01844 1.44118 1.69562 1.02827 1.14519 1.18711 1.30026 1.05012 0.86352 0.89803 1.25029 0.97051 0.97574 0.96575 1.70190 1.24846 1.46158 1.09633 0.87758 0.87659 0.79816 0.77801 1.20649 1.23007 1.20239 0.91657 0.92711 0.89077 0.86757 0.88775 0.89758 0.88504 0.88661 0.89850 0.93534 0.89548 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 10.56 101.05 1.07 1.66 16 2 O -0.37 -6.65 10.57 -39.26 -0.41 -7.07 16 3 C 0.46 9.22 5.75 36.00 0.21 9.42 16 4 O -0.47 -11.06 14.31 -18.74 -0.27 -11.33 16 5 C -0.10 -1.74 4.80 -27.88 -0.13 -1.87 16 6 C 0.19 3.62 2.28 -67.87 -0.16 3.46 16 7 H 0.06 1.22 7.95 -51.93 -0.41 0.81 16 8 C -0.10 -1.64 5.95 37.28 0.22 -1.42 16 9 S -0.29 -5.21 22.29 -107.50 -2.40 -7.61 16 10 C -0.11 -2.26 5.53 37.28 0.21 -2.06 16 11 C 0.14 3.14 5.25 -3.98 -0.02 3.12 16 12 N -0.59 -13.61 2.29 -165.56 -0.38 -13.98 16 13 C -0.27 -7.26 7.74 -15.06 -0.12 -7.38 16 14 H 0.08 2.32 4.67 -52.49 -0.25 2.07 16 15 C 0.04 1.09 4.78 -17.43 -0.08 1.01 16 16 N -0.87 -25.78 13.97 55.49 0.78 -25.00 16 17 Si 0.84 20.86 23.31 -169.99 -3.96 16.90 16 18 H -0.28 -6.59 5.88 56.52 0.33 -6.26 16 19 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 20 H -0.28 -6.80 6.45 56.52 0.36 -6.43 16 21 H 0.06 1.10 8.13 -51.93 -0.42 0.68 16 22 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16 23 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.11 2.05 7.17 -51.93 -0.37 1.67 16 25 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 26 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 27 H 0.10 1.32 8.14 -51.92 -0.42 0.89 16 28 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 29 H 0.08 1.81 4.26 -51.93 -0.22 1.58 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.09 2.09 4.60 -51.93 -0.24 1.86 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 260.90 15.07 3.93 3.93 Total: -1.00 -31.36 260.90 -5.63 -37.00 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -4.11 Total: 1.22 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: 1.19 Total: 5.95 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.40 Total: -38.99 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.68 Total: -18.40 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -3.96 Total: 16.90 kcal Atomic # 16 Polarization: -5.21 SS G_CDS: -2.40 Total: -7.61 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -31.36 -5.63 -37.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174731745.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.339 kcal (2) G-P(sol) polarization free energy of solvation -31.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds