Wall clock time and date at job start Sun Mar 29 2020 22:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42905 * 110.64280 * 2 1 4 4 C 1.55158 * 110.71978 * 123.13811 * 2 1 3 5 5 C 1.55393 * 101.36604 * 153.94677 * 4 2 1 6 6 N 1.47433 * 104.87396 * 323.02138 * 5 4 2 7 7 C 1.34770 * 125.64428 * 204.16622 * 6 5 4 8 8 O 1.21281 * 119.99539 * 179.97438 * 7 6 5 9 9 C 1.50694 * 120.00565 * 359.95749 * 7 6 5 10 10 S 1.81000 * 109.47530 * 179.97438 * 9 7 6 11 11 C 1.76203 * 100.00149 * 180.02562 * 10 9 7 12 12 H 1.07999 * 119.99934 * 0.02562 * 11 10 9 13 13 C 1.38796 * 119.99677 * 180.02562 * 11 10 9 14 14 N 1.31626 * 120.00546 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99867 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46851 * 359.97438 * 15 13 11 17 17 H 1.48492 * 109.47507 * 119.99766 * 15 13 11 18 18 H 1.48503 * 109.47012 * 240.00008 * 15 13 11 19 19 C 1.47023 * 108.70199 * 24.13006 * 6 5 4 20 20 H 1.09006 * 109.47029 * 59.29928 * 1 2 3 21 21 H 1.08997 * 109.47339 * 179.29927 * 1 2 3 22 22 H 1.08997 * 109.47393 * 299.30420 * 1 2 3 23 23 H 0.96696 * 114.00036 * 300.69961 * 3 2 1 24 24 H 1.09003 * 111.00778 * 272.11869 * 4 2 1 25 25 H 1.08998 * 110.99967 * 35.97300 * 4 2 1 26 26 H 1.08994 * 110.34653 * 204.17011 * 5 4 2 27 27 H 1.08997 * 110.34622 * 81.87129 * 5 4 2 28 28 H 1.08993 * 109.47174 * 300.00297 * 9 7 6 29 29 H 1.09008 * 109.47140 * 59.99646 * 9 7 6 30 30 H 0.96995 * 120.00754 * 180.02562 * 14 13 11 31 31 H 1.09001 * 109.87979 * 239.52809 * 19 6 5 32 32 H 1.09001 * 109.87860 * 118.35698 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0337 1.3373 0.0000 4 6 2.0789 -0.7933 1.2152 5 6 3.4674 -1.2455 0.6838 6 7 3.2471 -1.5461 -0.7426 7 6 3.9949 -2.3777 -1.4946 8 8 3.7200 -2.5510 -2.6631 9 6 5.1729 -3.0920 -0.8838 10 16 5.9673 -4.1275 -2.1379 11 6 7.2705 -4.8245 -1.1785 12 1 7.3748 -4.5603 -0.1365 13 6 8.1630 -5.7130 -1.7620 14 7 8.0356 -6.0354 -3.0318 15 14 9.5443 -6.4526 -0.7447 16 1 9.4687 -5.9331 0.6444 17 1 9.4102 -7.9313 -0.7287 18 1 10.8523 -6.0805 -1.3414 19 6 2.0760 -0.7891 -1.2086 20 1 -0.3633 0.5247 -0.8837 21 1 -0.3634 -1.0275 -0.0126 22 1 -0.3634 0.5030 0.8961 23 1 1.7504 1.8643 -0.7596 24 1 2.1819 -0.1489 2.0883 25 1 1.4468 -1.6528 1.4383 26 1 3.8031 -2.1378 1.2121 27 1 4.1954 -0.4418 0.7940 28 1 5.8884 -2.3594 -0.5106 29 1 4.8307 -3.7181 -0.0597 30 1 8.6591 -6.6566 -3.4395 31 1 1.3140 -1.4754 -1.5780 32 1 2.3712 -0.0991 -1.9991 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228045702.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:10 Heat of formation + Delta-G solvation = -86.759216 kcal Electronic energy + Delta-G solvation = -15574.393777 eV Core-core repulsion = 12854.155420 eV Total energy + Delta-G solvation = -2720.238357 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.10967 -38.06957 -35.37195 -32.42343 -31.93318 -29.77169 -29.41735 -26.20899 -25.40319 -23.22605 -20.71621 -19.40220 -17.74883 -17.22498 -16.57867 -15.71762 -14.97064 -14.79825 -14.77691 -14.33111 -13.99820 -13.78787 -13.32162 -12.80305 -12.62561 -12.42241 -12.27157 -11.87047 -11.73143 -11.57927 -11.06296 -11.00913 -10.85073 -10.76130 -10.38468 -9.79314 -9.39380 -9.06674 -8.49852 -8.22090 -6.49546 -6.20963 -3.91617 2.91221 3.07272 3.22313 3.27032 3.32100 3.62285 3.79612 4.19618 4.23160 4.35656 4.55407 5.00000 5.00648 5.11312 5.14335 5.31091 5.40484 5.47806 5.53751 5.59751 5.68007 5.75965 5.78941 5.88083 5.95216 6.15252 6.41325 7.35254 7.60636 7.67525 8.36327 8.56289 9.24410 10.86599 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.053283 B = 0.004684 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.369298 B = 5976.865177 C = 6301.614346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.114 3.886 3 O -0.551 6.551 4 C -0.119 4.119 5 C 0.103 3.897 6 N -0.624 5.624 7 C 0.548 3.452 8 O -0.517 6.517 9 C -0.146 4.146 10 S -0.062 6.062 11 C -0.534 4.534 12 H 0.073 0.927 13 C 0.074 3.926 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.271 1.271 17 H -0.280 1.280 18 H -0.280 1.280 19 C 0.086 3.914 20 H 0.062 0.938 21 H 0.071 0.929 22 H 0.068 0.932 23 H 0.379 0.621 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.268 0.732 31 H 0.074 0.926 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.549 12.124 9.193 20.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.073 3.927 3 O -0.357 6.357 4 C -0.157 4.157 5 C -0.021 4.021 6 N -0.361 5.361 7 C 0.336 3.664 8 O -0.392 6.392 9 C -0.297 4.297 10 S 0.165 5.835 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.037 4.037 20 H 0.081 0.919 21 H 0.090 0.910 22 H 0.087 0.913 23 H 0.227 0.773 24 H 0.111 0.889 25 H 0.109 0.891 26 H 0.099 0.901 27 H 0.091 0.909 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.551 11.492 7.797 19.404 hybrid contribution 0.945 -0.065 1.444 1.726 sum -12.607 11.427 9.241 19.362 Atomic orbital electron populations 1.22334 0.94168 1.03315 1.02902 1.22180 0.92712 0.82752 0.95056 1.86543 1.75988 1.23027 1.50187 1.22921 0.96348 0.99390 0.97035 1.22380 0.97224 1.01075 0.81373 1.48430 1.30395 1.45931 1.11367 1.20054 0.82752 0.77723 0.85831 1.90703 1.69887 1.62504 1.16060 1.23504 0.97733 1.02858 1.05563 1.85396 1.33516 1.52284 1.12313 1.22904 1.15163 1.31389 0.98796 0.90858 1.24991 0.97650 0.95679 0.95240 1.70025 1.36563 1.32795 1.10932 0.86111 0.80777 0.78776 0.79801 1.19598 1.20556 1.20554 1.22599 0.88881 0.95503 0.96760 0.91881 0.91014 0.91259 0.77309 0.88930 0.89148 0.90149 0.90929 0.89238 0.89264 0.92234 0.90799 0.91234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.16 8.82 37.15 0.33 -0.83 16 2 C 0.11 1.06 1.27 -88.79 -0.11 0.94 16 3 O -0.55 -5.22 13.09 -35.23 -0.46 -5.68 16 4 C -0.12 -1.08 6.29 -24.32 -0.15 -1.24 16 5 C 0.10 1.22 6.70 -2.26 -0.02 1.20 16 6 N -0.62 -9.58 3.33 -170.21 -0.57 -10.15 16 7 C 0.55 11.05 7.87 -10.99 -0.09 10.96 16 8 O -0.52 -12.40 16.19 5.56 0.09 -12.31 16 9 C -0.15 -3.09 5.16 36.00 0.19 -2.91 16 10 S -0.06 -1.71 20.57 -107.50 -2.21 -3.93 16 11 C -0.53 -15.41 9.50 30.94 0.29 -15.11 16 12 H 0.07 2.00 7.80 -52.49 -0.41 1.60 16 13 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 14 N -0.87 -26.38 13.22 55.49 0.73 -25.64 16 15 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16 16 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 C 0.09 1.08 6.23 -3.06 -0.02 1.06 16 20 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 21 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 22 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.38 2.22 9.09 45.56 0.41 2.64 16 24 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.09 0.72 8.05 -51.93 -0.42 0.30 16 26 H 0.08 0.90 7.47 -51.93 -0.39 0.51 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 29 H 0.09 1.74 7.85 -51.91 -0.41 1.33 16 30 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.07 0.92 7.80 -51.93 -0.41 0.52 16 32 H 0.07 0.89 8.07 -51.93 -0.42 0.47 16 LS Contribution 287.88 15.07 4.34 4.34 Total: -1.00 -35.43 287.88 -6.48 -41.91 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -3.70 Total: -1.15 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 0.33 Total: -3.90 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: 0.17 Total: -35.79 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.37 Total: -17.99 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -35.43 -6.48 -41.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228045702.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.853 kcal (2) G-P(sol) polarization free energy of solvation -35.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds