Wall clock time and date at job start Sun Mar 29 2020 23:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50707 * 109.46900 * 2 1 4 4 C 1.38515 * 120.45952 * 265.01834 * 3 2 1 5 5 C 1.38690 * 118.49284 * 179.97438 * 4 3 2 6 6 C 1.38361 * 119.34688 * 0.02562 * 5 4 3 7 7 N 1.31685 * 120.88188 * 359.74239 * 6 5 4 8 8 C 1.32623 * 121.63270 * 0.52680 * 7 6 5 9 9 C 1.48519 * 119.71753 * 179.75503 * 8 7 6 10 10 N 1.31225 * 126.20010 * 179.72799 * 9 8 7 11 11 O 1.21274 * 110.53256 * 179.70010 * 10 9 8 12 12 C 1.34740 * 109.75188 * 0.46792 * 11 10 9 13 13 C 1.40385 * 126.68173 * 179.80069 * 12 11 10 14 14 H 1.08005 * 119.99743 * 179.68833 * 13 12 11 15 15 C 1.40436 * 120.00341 * 359.41630 * 13 12 11 16 16 N 1.30515 * 119.99711 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99987 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46989 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47211 * 120.00072 * 17 15 13 20 20 H 1.48501 * 109.46681 * 239.99774 * 17 15 13 21 21 N 1.33175 * 106.62924 * 359.54067 * 12 11 10 22 22 H 1.08995 * 109.47138 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47287 * 300.00486 * 1 2 3 24 24 H 1.09005 * 109.47062 * 60.00010 * 1 2 3 25 25 H 1.08992 * 109.47084 * 240.00174 * 2 1 3 26 26 H 1.09000 * 109.46642 * 119.99852 * 2 1 3 27 27 H 1.08000 * 120.75820 * 359.96489 * 4 3 2 28 28 H 1.07999 * 120.32409 * 180.02562 * 5 4 3 29 29 H 1.07996 * 119.56252 * 180.02562 * 6 5 4 30 30 H 0.97004 * 120.00163 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3641 2.0484 -1.1895 5 6 2.8217 3.3568 -1.1421 6 6 2.9332 3.9922 0.0819 7 7 2.6063 3.3731 1.1972 8 6 2.1698 2.1208 1.1953 9 6 1.8182 1.4617 2.4789 10 7 1.3717 0.2363 2.6242 11 8 1.1821 -0.0112 3.7962 12 6 1.4877 1.0668 4.5445 13 6 1.3956 1.1715 5.9414 14 1 1.6751 2.0913 6.4336 15 6 0.9344 0.0821 6.6983 16 7 0.5911 -1.0274 6.1030 17 14 0.8112 0.2217 8.5570 18 1 1.2566 1.5729 8.9825 19 1 -0.5972 0.0091 8.9771 20 1 1.6768 -0.8062 9.1890 21 7 1.8996 2.0117 3.7012 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.2688 1.5305 -2.1324 28 1 3.0883 3.8744 -2.0517 29 1 3.2887 5.0112 0.1228 30 1 0.2722 -1.7798 6.6257 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234130160.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:17:00 Heat of formation + Delta-G solvation = 82.202015 kcal Electronic energy + Delta-G solvation = -17058.467067 eV Core-core repulsion = 14242.404218 eV Total energy + Delta-G solvation = -2816.062849 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.08302 -39.85763 -34.57617 -34.11268 -33.73103 -31.76974 -30.21193 -29.19232 -26.56821 -24.33091 -23.81483 -21.51818 -21.25766 -20.58499 -18.17573 -16.25078 -16.11552 -15.91161 -15.46922 -15.07630 -14.36389 -13.88447 -13.65803 -13.24356 -13.19320 -12.78048 -12.32539 -11.81255 -11.66708 -11.52292 -11.49482 -10.92826 -10.61417 -10.47520 -10.27177 -10.01006 -9.86597 -9.38287 -9.05611 -8.87650 -8.68933 -8.00006 -7.10650 -5.03760 1.20678 1.56414 2.76382 2.96645 3.04547 3.22104 3.73565 3.74691 4.37652 4.43165 4.86920 5.00929 5.03770 5.17421 5.23744 5.27870 5.56305 5.75015 5.80687 5.85394 6.07302 6.07669 6.31951 6.35902 6.54418 6.76711 6.78342 6.84078 6.88240 7.30743 7.87247 8.06365 8.26282 8.39346 8.45518 9.88402 10.26570 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.040454 B = 0.006153 C = 0.005435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.982906 B = 4549.234538 C = 5150.176242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.088 4.088 3 C -0.107 4.107 4 C -0.082 4.082 5 C -0.179 4.179 6 C 0.090 3.910 7 N -0.449 5.449 8 C 0.229 3.771 9 C 0.196 3.804 10 N -0.441 5.441 11 O 0.052 5.948 12 C 0.300 3.700 13 C -0.413 4.413 14 H 0.115 0.885 15 C 0.071 3.929 16 N -0.764 5.764 17 Si 0.936 3.064 18 H -0.255 1.255 19 H -0.269 1.269 20 H -0.269 1.269 21 N -0.580 5.580 22 H 0.056 0.944 23 H 0.059 0.941 24 H 0.040 0.960 25 H 0.061 0.939 26 H 0.108 0.892 27 H 0.133 0.867 28 H 0.131 0.869 29 H 0.155 0.845 30 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.945 1.640 -8.392 8.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.126 4.126 3 C -0.111 4.111 4 C -0.108 4.108 5 C -0.199 4.199 6 C -0.069 4.069 7 N -0.158 5.158 8 C 0.091 3.909 9 C -0.074 4.074 10 N -0.171 5.171 11 O 0.002 5.998 12 C 0.110 3.890 13 C -0.450 4.450 14 H 0.133 0.867 15 C -0.154 4.154 16 N -0.391 5.391 17 Si 0.759 3.241 18 H -0.178 1.178 19 H -0.193 1.193 20 H -0.193 1.193 21 N -0.323 5.323 22 H 0.075 0.925 23 H 0.078 0.922 24 H 0.060 0.940 25 H 0.079 0.921 26 H 0.126 0.874 27 H 0.151 0.849 28 H 0.149 0.851 29 H 0.172 0.828 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.953 1.742 -8.249 8.485 hybrid contribution -0.151 -0.380 0.080 0.417 sum 0.802 1.362 -8.169 8.320 Atomic orbital electron populations 1.21541 0.94534 1.01538 1.01177 1.20724 0.96714 0.91323 1.03857 1.20902 0.99261 0.98281 0.92640 1.21362 0.97133 0.94661 0.97600 1.22137 1.02417 0.95905 0.99472 1.22730 0.96848 0.99884 0.87436 1.67595 1.08954 1.08623 1.30633 1.18205 0.94838 0.89126 0.88741 1.22809 1.02293 0.89844 0.92488 1.74597 1.26178 1.16816 0.99477 1.85534 1.66356 1.37568 1.10356 1.24280 0.89851 0.79562 0.95338 1.18650 1.39668 1.01224 0.85492 0.86749 1.26192 0.92200 0.93912 1.03106 1.69633 1.27362 1.02730 1.39424 0.85779 0.78994 0.80141 0.79198 1.17793 1.19344 1.19340 1.72524 1.33137 1.29111 0.97501 0.92474 0.92182 0.94047 0.92064 0.87398 0.84939 0.85062 0.82795 0.89699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 9.54 37.16 0.35 -1.85 16 2 C -0.09 -1.54 5.34 -27.88 -0.15 -1.69 16 3 C -0.11 -1.97 5.18 -104.16 -0.54 -2.51 16 4 C -0.08 -1.18 9.83 -39.31 -0.39 -1.57 16 5 C -0.18 -2.38 10.11 -39.37 -0.40 -2.78 16 6 C 0.09 1.44 11.18 -17.57 -0.20 1.24 16 7 N -0.45 -9.59 10.28 -9.76 -0.10 -9.69 16 8 C 0.23 5.13 6.75 -82.93 -0.56 4.57 16 9 C 0.20 5.17 7.68 -156.53 -1.20 3.97 16 10 N -0.44 -11.57 7.63 31.47 0.24 -11.33 16 11 O 0.05 1.47 9.72 15.17 0.15 1.61 16 12 C 0.30 8.58 7.80 -16.33 -0.13 8.45 16 13 C -0.41 -10.91 9.48 -37.95 -0.36 -11.27 16 14 H 0.11 2.89 7.85 -52.48 -0.41 2.47 16 15 C 0.07 1.70 5.50 -17.28 -0.10 1.60 16 16 N -0.76 -19.10 12.05 55.57 0.67 -18.43 16 17 Si 0.94 17.50 29.56 -169.99 -5.03 12.47 16 18 H -0.25 -4.69 7.11 56.52 0.40 -4.29 16 19 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 20 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 21 N -0.58 -16.61 11.61 -11.63 -0.14 -16.75 16 22 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.06 1.21 7.21 -51.93 -0.37 0.83 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.87 8.06 -51.93 -0.42 0.45 16 26 H 0.11 2.22 5.55 -51.93 -0.29 1.93 16 27 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 28 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 29 H 0.15 1.90 8.06 -52.49 -0.42 1.48 16 30 H 0.29 6.43 8.29 -40.82 -0.34 6.09 16 LS Contribution 267.99 15.07 4.04 4.04 Total: -1.00 -30.87 267.99 -6.57 -37.44 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -2.74 Total: 2.47 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -3.66 Total: -1.83 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: 0.67 Total: -56.21 kcal Atomic # 8 Polarization: 1.47 SS G_CDS: 0.15 Total: 1.61 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.03 Total: 12.47 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.87 -6.57 -37.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234130160.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.640 kcal (2) G-P(sol) polarization free energy of solvation -30.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds