Wall clock time and date at job start Sun Mar 29 2020 23:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50707 * 109.46900 * 2 1 4 4 C 1.38515 * 120.45952 * 265.01834 * 3 2 1 5 5 C 1.38690 * 118.49284 * 179.97438 * 4 3 2 6 6 C 1.38361 * 119.34688 * 0.02562 * 5 4 3 7 7 N 1.31685 * 120.88188 * 359.74239 * 6 5 4 8 8 C 1.32623 * 121.63270 * 0.52680 * 7 6 5 9 9 C 1.48519 * 119.71753 * 179.75503 * 8 7 6 10 10 N 1.31225 * 126.20010 * 179.72799 * 9 8 7 11 11 O 1.21274 * 110.53256 * 179.70010 * 10 9 8 12 12 C 1.34740 * 109.75188 * 0.46792 * 11 10 9 13 13 C 1.40385 * 126.68173 * 179.80069 * 12 11 10 14 14 H 1.08005 * 119.99743 * 179.68833 * 13 12 11 15 15 C 1.40436 * 120.00341 * 359.41630 * 13 12 11 16 16 N 1.30515 * 119.99711 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99987 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46989 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47211 * 120.00072 * 17 15 13 20 20 H 1.48501 * 109.46681 * 239.99774 * 17 15 13 21 21 N 1.33175 * 106.62924 * 359.54067 * 12 11 10 22 22 H 1.08995 * 109.47138 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47287 * 300.00486 * 1 2 3 24 24 H 1.09005 * 109.47062 * 60.00010 * 1 2 3 25 25 H 1.08992 * 109.47084 * 240.00174 * 2 1 3 26 26 H 1.09000 * 109.46642 * 119.99852 * 2 1 3 27 27 H 1.08000 * 120.75820 * 359.96489 * 4 3 2 28 28 H 1.07999 * 120.32409 * 180.02562 * 5 4 3 29 29 H 1.07996 * 119.56252 * 180.02562 * 6 5 4 30 30 H 0.97004 * 120.00163 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3641 2.0484 -1.1895 5 6 2.8217 3.3568 -1.1421 6 6 2.9332 3.9922 0.0819 7 7 2.6063 3.3731 1.1972 8 6 2.1698 2.1208 1.1953 9 6 1.8182 1.4617 2.4789 10 7 1.3717 0.2363 2.6242 11 8 1.1821 -0.0112 3.7962 12 6 1.4877 1.0668 4.5445 13 6 1.3956 1.1715 5.9414 14 1 1.6751 2.0913 6.4336 15 6 0.9344 0.0821 6.6983 16 7 0.5911 -1.0274 6.1030 17 14 0.8112 0.2217 8.5570 18 1 1.2566 1.5729 8.9825 19 1 -0.5972 0.0091 8.9771 20 1 1.6768 -0.8062 9.1890 21 7 1.8996 2.0117 3.7012 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.2688 1.5305 -2.1324 28 1 3.0883 3.8744 -2.0517 29 1 3.2887 5.0112 0.1228 30 1 0.2722 -1.7798 6.6257 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234130160.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:17:00 Heat of formation + Delta-G solvation = 60.054803 kcal Electronic energy + Delta-G solvation = -17059.427442 eV Core-core repulsion = 14242.404218 eV Total energy + Delta-G solvation = -2817.023224 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.06091 -41.19108 -36.16407 -35.96921 -35.49373 -33.29738 -31.95985 -30.60114 -28.56226 -25.83477 -25.20120 -23.42927 -22.85673 -22.09750 -19.96604 -17.94432 -17.83713 -17.51417 -17.24854 -16.47661 -15.97620 -15.35918 -15.12026 -14.82847 -14.58532 -14.03493 -13.63740 -13.59025 -13.42884 -13.09817 -13.00121 -12.33807 -12.22542 -12.15902 -11.95530 -11.76363 -11.54088 -10.95967 -10.77093 -10.45457 -10.34296 -9.60665 -8.96719 -7.10432 -0.18000 0.33395 1.00638 1.40455 1.56642 1.61900 2.02122 2.15693 2.83409 2.88284 3.08531 3.22007 3.57314 3.80296 3.90796 4.09285 4.39046 4.42867 4.47052 4.50996 4.58192 4.79551 4.93061 5.00923 5.13062 5.17002 5.20343 5.39277 5.52072 5.78394 5.85714 6.05448 6.24468 6.43888 7.05924 8.05375 8.22776 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.040454 B = 0.006153 C = 0.005435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.982906 B = 4549.234538 C = 5150.176242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.088 4.088 3 C -0.111 4.111 4 C -0.073 4.073 5 C -0.145 4.145 6 C 0.079 3.921 7 N -0.496 5.496 8 C 0.172 3.828 9 C 0.197 3.803 10 N -0.446 5.446 11 O 0.019 5.981 12 C 0.269 3.731 13 C -0.433 4.433 14 H 0.118 0.882 15 C 0.030 3.970 16 N -0.794 5.794 17 Si 1.022 2.978 18 H -0.251 1.251 19 H -0.255 1.255 20 H -0.255 1.255 21 N -0.621 5.621 22 H 0.066 0.934 23 H 0.014 0.986 24 H 0.070 0.930 25 H 0.102 0.898 26 H 0.068 0.932 27 H 0.181 0.819 28 H 0.188 0.812 29 H 0.187 0.813 30 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.296 2.220 -10.248 10.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.125 4.125 3 C -0.115 4.115 4 C -0.098 4.098 5 C -0.165 4.165 6 C -0.080 4.080 7 N -0.206 5.206 8 C 0.036 3.964 9 C -0.074 4.074 10 N -0.180 5.180 11 O -0.026 6.026 12 C 0.080 3.920 13 C -0.471 4.471 14 H 0.136 0.864 15 C -0.192 4.192 16 N -0.421 5.421 17 Si 0.838 3.162 18 H -0.174 1.174 19 H -0.179 1.179 20 H -0.179 1.179 21 N -0.365 5.365 22 H 0.085 0.915 23 H 0.034 0.966 24 H 0.089 0.911 25 H 0.120 0.880 26 H 0.087 0.913 27 H 0.198 0.802 28 H 0.206 0.794 29 H 0.204 0.796 30 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.291 2.286 -10.097 10.432 hybrid contribution -0.213 -0.479 0.470 0.704 sum 1.078 1.807 -9.627 9.854 Atomic orbital electron populations 1.21477 0.94427 1.01895 1.00285 1.20696 0.96801 0.91230 1.03809 1.21081 0.99174 0.98437 0.92796 1.21910 0.95203 0.95161 0.97563 1.22731 0.98335 0.95166 1.00266 1.23441 0.96122 1.01190 0.87292 1.67421 1.10402 1.08810 1.33989 1.18219 0.99305 0.90597 0.88295 1.23632 1.00402 0.89696 0.93684 1.74592 1.27636 1.17237 0.98535 1.85469 1.67830 1.38017 1.11242 1.24837 0.90703 0.80008 0.96407 1.19140 1.40164 1.02548 0.85212 0.86417 1.27355 0.90643 0.92512 1.08645 1.69679 1.26487 1.03692 1.42213 0.84568 0.79751 0.80512 0.71323 1.17362 1.17894 1.17870 1.72474 1.35153 1.30080 0.98823 0.91532 0.96628 0.91149 0.87974 0.91341 0.80203 0.79449 0.79580 0.88173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.16 9.54 71.98 0.69 -3.47 16 2 C -0.09 -3.01 5.34 29.85 0.16 -2.85 16 3 C -0.11 -3.97 5.18 -19.57 -0.10 -4.07 16 4 C -0.07 -1.78 9.83 22.44 0.22 -1.56 16 5 C -0.15 -3.11 10.11 22.41 0.23 -2.89 16 6 C 0.08 2.32 11.18 84.74 0.95 3.27 16 7 N -0.50 -21.52 10.28 -184.79 -1.90 -23.42 16 8 C 0.17 7.97 6.75 42.00 0.28 8.26 16 9 C 0.20 11.13 7.68 137.49 1.06 12.19 16 10 N -0.45 -25.23 7.63 -56.10 -0.43 -25.66 16 11 O 0.02 1.15 9.72 64.35 0.63 1.78 16 12 C 0.27 16.50 7.80 85.07 0.66 17.17 16 13 C -0.43 -24.09 9.48 23.33 0.22 -23.87 16 14 H 0.12 6.23 7.85 -2.91 -0.02 6.21 16 15 C 0.03 1.49 5.50 85.42 0.47 1.96 16 16 N -0.79 -40.86 12.05 21.91 0.26 -40.59 16 17 Si 1.02 35.52 29.56 68.60 2.03 37.55 16 18 H -0.25 -8.48 7.11 99.48 0.71 -7.77 16 19 H -0.25 -8.29 7.11 99.48 0.71 -7.58 16 20 H -0.25 -8.27 7.11 99.48 0.71 -7.57 16 21 N -0.62 -38.23 11.61 -305.14 -3.54 -41.77 16 22 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 23 H 0.01 0.63 7.21 -2.39 -0.02 0.61 16 24 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 25 H 0.10 2.61 8.06 -2.39 -0.02 2.59 16 26 H 0.07 2.95 5.55 -2.39 -0.01 2.93 16 27 H 0.18 2.70 8.06 -2.91 -0.02 2.68 16 28 H 0.19 2.01 8.06 -2.91 -0.02 1.98 16 29 H 0.19 4.00 8.06 -2.91 -0.02 3.97 16 30 H 0.31 13.65 8.29 -92.71 -0.77 12.88 16 Total: -1.00 -76.20 267.99 3.05 -73.15 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 1.17 Total: 14.84 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: 4.83 Total: 4.13 kcal Atomic # 7 Polarization: -125.84 SS G_CDS: -5.61 Total: -131.45 kcal Atomic # 8 Polarization: 1.15 SS G_CDS: 0.63 Total: 1.78 kcal Atomic # 14 Polarization: 35.52 SS G_CDS: 2.03 Total: 37.55 kcal Total: -76.20 3.05 -73.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234130160.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.201 kcal (2) G-P(sol) polarization free energy of solvation -76.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds